Wall clock time and date at job start Sun Mar 7 2021 08:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42911 * 1 3 3 Si 1.86295 * 109.47006 * 2 1 4 4 C 1.50694 * 109.47222 * 120.00454 * 2 1 3 5 5 C 1.34699 * 125.66980 * 64.99498 * 4 2 1 6 6 C 1.40975 * 107.03123 * 179.97438 * 5 4 2 7 7 C 1.35938 * 106.74020 * 0.02562 * 6 5 4 8 8 C 1.47816 * 125.92553 * 180.02562 * 7 6 5 9 9 C 1.39175 * 119.99508 * 180.02562 * 8 7 6 10 10 C 1.39469 * 119.75895 * 179.97438 * 9 8 7 11 11 C 1.47559 * 120.12189 * 179.97438 * 10 9 8 12 12 O 1.21591 * 119.99864 * 180.02562 * 11 10 9 13 13 N 1.34771 * 120.00125 * 0.02562 * 11 10 9 14 14 C 1.46502 * 120.00096 * 180.02562 * 13 11 10 15 15 H 1.09010 * 112.84868 * 23.80319 * 14 13 11 16 16 C 1.53778 * 113.61904 * 154.99821 * 14 13 11 17 17 C 1.53777 * 87.08151 * 139.98058 * 16 14 13 18 18 H 1.08998 * 113.61666 * 89.20727 * 17 16 14 19 19 C 1.50707 * 113.61474 * 220.01968 * 17 16 14 20 20 C 1.38234 * 119.99635 * 59.72887 * 19 17 16 21 21 C 1.38237 * 119.99423 * 179.77031 * 20 19 17 22 22 C 1.38236 * 120.00287 * 0.50270 * 21 20 19 23 23 C 1.38231 * 119.99693 * 359.74779 * 22 21 20 24 24 C 1.38232 * 120.00374 * 0.02562 * 23 22 21 25 25 C 1.53770 * 87.08246 * 334.56892 * 17 16 14 26 26 C 1.40209 * 119.75032 * 0.02562 * 10 9 8 27 27 O 1.35649 * 119.99708 * 179.97438 * 26 10 9 28 28 C 1.38810 * 120.00262 * 359.97438 * 26 10 9 29 29 C 1.37779 * 120.24062 * 359.73377 * 28 26 10 30 30 O 1.34348 * 125.65875 * 245.00054 * 4 2 1 31 31 H 0.96697 * 113.99333 * 299.99405 * 1 2 3 32 32 H 1.09001 * 109.46668 * 239.99922 * 2 1 3 33 33 H 1.48510 * 110.00110 * 300.00211 * 3 2 1 34 34 H 1.48499 * 109.99974 * 61.31682 * 3 2 1 35 35 H 1.08003 * 126.48597 * 0.26589 * 5 4 2 36 36 H 1.08004 * 126.62875 * 180.02562 * 6 5 4 37 37 H 1.08008 * 120.12394 * 359.97438 * 9 8 7 38 38 H 0.97001 * 120.00695 * 359.97438 * 13 11 10 39 39 H 1.08999 * 113.61375 * 254.53371 * 16 14 13 40 40 H 1.09006 * 113.61458 * 25.34699 * 16 14 13 41 41 H 1.07999 * 120.00247 * 359.97438 * 20 19 17 42 42 H 1.08006 * 119.99878 * 180.23150 * 21 20 19 43 43 H 1.07994 * 120.00166 * 179.72891 * 22 21 20 44 44 H 1.08006 * 119.99801 * 179.97438 * 23 22 21 45 45 H 1.08002 * 120.00330 * 179.97438 * 24 23 22 46 46 H 1.09006 * 113.61930 * 270.88495 * 25 17 16 47 47 H 1.09005 * 113.61856 * 139.97947 * 25 17 16 48 48 H 0.96704 * 114.00142 * 89.99509 * 27 26 10 49 49 H 1.07997 * 119.88338 * 179.97438 * 28 26 10 50 50 H 1.08001 * 119.87315 * 180.27277 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.7572 -2.0167 1.5092 6 6 2.3825 -2.2613 2.7488 7 6 2.9088 -1.0780 3.1621 8 6 3.6601 -0.8534 4.4151 9 6 4.1455 0.4154 4.7174 10 6 4.8533 0.6219 5.9013 11 6 5.3721 1.9637 6.2294 12 8 5.9893 2.1411 7.2620 13 7 5.1619 2.9926 5.3848 14 6 5.6775 4.3247 5.7103 15 1 6.5250 4.2948 6.3953 16 6 5.9134 5.2125 4.4770 17 6 5.3500 6.3785 5.3062 18 1 6.1074 6.9122 5.8802 19 6 4.4540 7.3007 4.5201 20 6 3.3089 6.8082 3.9225 21 6 2.4846 7.6551 3.2054 22 6 2.8108 8.9923 3.0772 23 6 3.9586 9.4836 3.6704 24 6 4.7805 8.6378 4.3914 25 6 4.5844 5.3245 6.1231 26 6 5.0709 -0.4505 6.7778 27 8 5.7591 -0.2555 7.9304 28 6 4.5822 -1.7118 6.4663 29 6 3.8778 -1.9144 5.2996 30 8 2.6274 -0.1461 2.2313 31 1 -0.3932 0.4416 0.7651 32 1 1.7924 -0.5139 -0.8900 33 1 1.5615 2.4679 -1.2085 34 1 1.5879 2.4585 1.2242 35 1 1.2406 -2.7408 0.8966 36 1 2.4337 -3.2062 3.2694 37 1 3.9749 1.2372 4.0376 38 1 4.6699 2.8512 4.5609 39 1 6.9657 5.3292 4.2180 40 1 5.2941 4.9442 3.6210 41 1 3.0566 5.7625 4.0186 42 1 1.5879 7.2711 2.7416 43 1 2.1691 9.6530 2.5133 44 1 4.2137 10.5283 3.5698 45 1 5.6775 9.0216 4.8546 46 1 3.6006 5.0877 5.7178 47 1 4.5637 5.5317 7.1931 48 1 5.2040 -0.0098 8.6832 49 1 4.7513 -2.5366 7.1427 50 1 3.4964 -2.8972 5.0652 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:43 Heat of formation + Delta-G solvation = -2.005173 kcal Electronic energy + Delta-G solvation = -35344.030019 eV Core-core repulsion = 30656.803270 eV Total energy + Delta-G solvation = -4687.226749 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.150 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.69250 -41.77665 -40.96854 -39.71593 -38.57272 -38.18898 -37.81722 -34.90924 -34.16156 -32.79629 -32.50462 -31.82851 -31.40072 -30.04024 -26.72712 -26.48180 -26.37660 -24.97625 -23.69111 -23.51122 -23.01082 -22.33559 -21.65135 -21.27578 -20.46308 -19.52790 -19.14233 -18.32936 -18.23376 -17.63944 -17.46338 -17.07837 -16.70248 -16.63892 -16.40520 -16.20924 -15.94131 -15.83070 -15.77522 -15.37528 -15.27110 -14.72190 -14.48298 -14.36352 -14.30709 -14.18828 -13.95333 -13.91760 -13.78594 -13.56937 -13.47541 -13.21168 -13.13659 -13.10576 -12.88458 -12.55095 -12.33177 -12.13457 -11.90104 -11.80100 -11.66073 -11.46812 -11.06105 -10.86650 -10.78816 -10.47776 -10.31112 -10.04283 -9.83591 -9.56545 -8.90350 -4.95836 -0.55747 -0.20773 0.41478 0.48292 0.77475 1.15978 1.47197 1.49440 1.70808 1.86662 1.92131 2.04747 2.62668 2.82027 3.11531 3.21926 3.30827 3.42651 3.51054 3.65103 3.68873 3.71305 3.89697 3.92335 4.02235 4.02826 4.06688 4.12311 4.17178 4.21485 4.27499 4.36176 4.45591 4.54222 4.60027 4.64098 4.65441 4.70230 4.72426 4.80452 4.81537 4.89225 4.95144 5.00430 5.03097 5.08280 5.14200 5.15275 5.19949 5.21847 5.44959 5.50305 5.51867 5.57208 5.62758 5.72562 5.98775 6.10701 6.34918 6.42562 6.72487 7.11956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.038 4.038 3 Si 0.766 3.234 4 C -0.053 4.053 5 C -0.181 4.181 6 C -0.190 4.190 7 C 0.024 3.976 8 C -0.041 4.041 9 C -0.051 4.051 10 C -0.179 4.179 11 C 0.557 3.443 12 O -0.559 6.559 13 N -0.706 5.706 14 C 0.121 3.879 15 H 0.102 0.898 16 C -0.125 4.125 17 C -0.067 4.067 18 H 0.107 0.893 19 C -0.075 4.075 20 C -0.126 4.126 21 C -0.131 4.131 22 C -0.137 4.137 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.141 4.141 26 C 0.163 3.837 27 O -0.495 6.495 28 C -0.147 4.147 29 C -0.045 4.045 30 O -0.172 6.172 31 H 0.390 0.610 32 H 0.152 0.848 33 H -0.286 1.286 34 H -0.281 1.281 35 H 0.162 0.838 36 H 0.174 0.826 37 H 0.149 0.851 38 H 0.411 0.589 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.093 0.907 47 H 0.067 0.933 48 H 0.410 0.590 49 H 0.164 0.836 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 -1.487 -2.731 3.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.147 4.147 3 Si 0.669 3.331 4 C -0.103 4.103 5 C -0.201 4.201 6 C -0.209 4.209 7 C -0.025 4.025 8 C -0.042 4.042 9 C -0.070 4.070 10 C -0.183 4.183 11 C 0.346 3.654 12 O -0.438 6.438 13 N -0.358 5.358 14 C 0.016 3.984 15 H 0.120 0.880 16 C -0.163 4.163 17 C -0.085 4.085 18 H 0.126 0.874 19 C -0.075 4.075 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.180 4.180 26 C 0.117 3.883 27 O -0.308 6.308 28 C -0.165 4.165 29 C -0.063 4.063 30 O -0.070 6.070 31 H 0.239 0.761 32 H 0.169 0.831 33 H -0.213 1.213 34 H -0.207 1.207 35 H 0.179 0.821 36 H 0.191 0.809 37 H 0.166 0.834 38 H 0.248 0.752 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.111 0.889 47 H 0.086 0.914 48 H 0.271 0.729 49 H 0.181 0.819 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.765 -0.652 -2.856 3.027 hybrid contribution -1.773 -0.093 0.570 1.865 sum -2.538 -0.745 -2.285 3.495 Atomic orbital electron populations 1.86646 1.17347 1.80453 1.50008 1.24530 0.83508 1.12561 0.94116 0.93701 0.90361 0.71626 0.77434 1.23027 1.01001 0.94023 0.92254 1.21800 1.03960 0.95961 0.98335 1.22159 1.02140 0.99080 0.97496 1.20423 1.03491 0.87736 0.90891 1.17695 1.00397 0.94499 0.91573 1.21399 0.93721 0.97277 0.94556 1.20273 1.05627 0.93783 0.98631 1.18296 0.79071 0.84620 0.83453 1.90805 1.41731 1.84862 1.26429 1.45852 1.57154 1.08473 1.24274 1.22526 0.97494 0.79623 0.98751 0.88026 1.23418 1.03015 0.93264 0.96588 1.21306 0.97267 0.93285 0.96671 0.87442 1.19791 0.95613 0.94145 0.97984 1.21182 0.94720 1.00392 0.98066 1.21405 1.00129 0.94075 0.99239 1.21437 0.97694 0.96139 1.00249 1.21435 0.95028 1.00625 0.97628 1.21330 1.00338 0.93370 0.99573 1.23587 0.98851 0.94879 1.00658 1.18897 0.89794 0.91770 0.87857 1.84706 1.36371 1.91127 1.18617 1.21574 0.98790 0.96951 0.99181 1.21418 0.94494 0.99207 0.91176 1.83906 1.58118 1.38266 1.26745 0.76052 0.83105 1.21277 1.20735 0.82084 0.80859 0.83377 0.75150 0.89640 0.88220 0.85070 0.85063 0.85020 0.84835 0.84942 0.88869 0.91416 0.72930 0.81891 0.81745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.27 12.88 -148.98 -1.92 -1.65 16 2 C -0.04 0.12 2.98 71.23 0.21 0.33 16 3 Si 0.77 -2.75 32.11 68.60 2.20 -0.55 16 4 C -0.05 0.05 6.20 24.87 0.15 0.20 16 5 C -0.18 0.15 10.78 22.13 0.24 0.39 16 6 C -0.19 0.35 10.26 22.41 0.23 0.58 16 7 C 0.02 -0.01 7.03 24.27 0.17 0.16 16 8 C -0.04 0.06 5.87 -20.13 -0.12 -0.06 16 9 C -0.05 0.05 9.20 22.79 0.21 0.26 16 10 C -0.18 -0.52 5.88 -20.04 -0.12 -0.64 16 11 C 0.56 3.37 7.76 86.70 0.67 4.04 16 12 O -0.56 -7.60 14.74 16.99 0.25 -7.35 16 13 N -0.71 0.08 5.30 -443.17 -2.35 -2.27 16 14 C 0.12 -0.02 4.24 45.52 0.19 0.17 16 15 H 0.10 0.40 7.46 -2.38 -0.02 0.38 16 16 C -0.12 0.46 7.29 31.12 0.23 0.69 16 17 C -0.07 0.14 3.98 -11.02 -0.04 0.10 16 18 H 0.11 -0.32 8.09 -2.39 -0.02 -0.34 16 19 C -0.08 -0.03 5.29 -19.86 -0.11 -0.14 16 20 C -0.13 -0.03 8.60 22.27 0.19 0.17 16 21 C -0.13 -0.12 10.05 22.27 0.22 0.11 16 22 C -0.14 -0.17 10.05 22.27 0.22 0.05 16 23 C -0.13 -0.16 10.05 22.27 0.22 0.07 16 24 C -0.13 -0.13 9.71 22.27 0.22 0.08 16 25 C -0.14 0.14 7.25 31.12 0.23 0.37 16 26 C 0.16 0.47 6.72 22.89 0.15 0.62 16 27 O -0.49 -2.56 11.55 -68.64 -0.79 -3.36 16 28 C -0.15 0.35 9.96 22.30 0.22 0.57 16 29 C -0.04 0.18 9.54 22.55 0.22 0.40 16 30 O -0.17 0.00 8.80 -6.63 -0.06 -0.06 16 31 H 0.39 -2.22 8.70 -74.06 -0.64 -2.86 16 32 H 0.15 -0.94 7.96 -2.39 -0.02 -0.96 16 33 H -0.29 -0.77 7.11 99.48 0.71 -0.06 16 34 H -0.28 -0.24 7.11 99.48 0.71 0.47 16 35 H 0.16 -0.46 8.06 -2.91 -0.02 -0.48 16 36 H 0.17 -1.17 7.25 -2.91 -0.02 -1.19 16 37 H 0.15 -0.72 6.24 -2.91 -0.02 -0.74 16 38 H 0.41 -2.16 6.75 -92.71 -0.63 -2.78 16 39 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.10 -0.55 7.69 -2.38 -0.02 -0.57 16 41 H 0.13 -0.40 6.68 -2.91 -0.02 -0.42 16 42 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 43 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 44 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 45 H 0.13 -0.26 8.05 -2.91 -0.02 -0.28 16 46 H 0.09 -0.18 6.32 -2.38 -0.02 -0.19 16 47 H 0.07 0.07 8.14 -2.38 -0.02 0.05 16 48 H 0.41 -0.77 9.06 -74.05 -0.67 -1.44 16 49 H 0.16 -1.04 8.06 -2.91 -0.02 -1.07 16 50 H 0.17 -1.56 6.96 -2.91 -0.02 -1.58 16 Total: 0.00 -22.31 422.08 0.28 -22.03 By element: Atomic # 1 Polarization: -14.44 SS G_CDS: -0.88 Total: -15.32 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 3.82 Total: 8.52 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -2.35 Total: -2.27 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -2.52 Total: -12.42 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.20 Total: -0.55 kcal Total: -22.31 0.28 -22.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.029 kcal (2) G-P(sol) polarization free energy of solvation -22.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds