Wall clock time and date at job start Sun Mar 7 2021 08:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47588 * 2 1 4 4 C 1.50696 * 109.47238 * 239.99652 * 2 1 3 5 5 C 1.34196 * 126.54395 * 105.02949 * 4 2 1 6 6 N 1.36863 * 109.97027 * 179.97438 * 5 4 2 7 7 C 1.37392 * 109.98190 * 359.97438 * 6 5 4 8 8 C 1.39329 * 133.25571 * 179.97438 * 7 6 5 9 9 C 1.36356 * 120.24214 * 179.76605 * 8 7 6 10 10 C 1.40169 * 120.66308 * 0.52258 * 9 8 7 11 11 C 1.47656 * 119.97157 * 179.75186 * 10 9 8 12 12 O 1.21577 * 120.00281 * 179.72101 * 11 10 9 13 13 N 1.34785 * 119.99727 * 359.72860 * 11 10 9 14 14 C 1.46498 * 119.99454 * 179.97438 * 13 11 10 15 15 H 1.08999 * 112.85415 * 23.80030 * 14 13 11 16 16 C 1.53777 * 113.61124 * 155.00165 * 14 13 11 17 17 C 1.53775 * 87.08433 * 140.06236 * 16 14 13 18 18 H 1.08999 * 113.61752 * 89.19529 * 17 16 14 19 19 C 1.50703 * 113.61931 * 220.01654 * 17 16 14 20 20 C 1.38234 * 120.00277 * 240.00280 * 19 17 16 21 21 C 1.38230 * 119.99885 * 179.97438 * 20 19 17 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38235 * 119.99539 * 59.97375 * 19 17 16 25 25 C 1.53777 * 87.08273 * 334.56585 * 17 16 14 26 26 C 1.39181 * 120.05474 * 359.48085 * 10 9 8 27 27 C 1.39230 * 119.39325 * 0.25163 * 26 10 9 28 28 H 0.96696 * 113.99942 * 300.00502 * 1 2 3 29 29 H 1.09001 * 109.46909 * 120.00236 * 2 1 3 30 30 H 1.48506 * 109.99653 * 299.99862 * 3 2 1 31 31 H 1.48490 * 109.99850 * 61.31466 * 3 2 1 32 32 H 1.08002 * 125.01135 * 359.97438 * 5 4 2 33 33 H 0.97006 * 125.00493 * 180.02562 * 6 5 4 34 34 H 1.08008 * 119.88089 * 0.05395 * 8 7 6 35 35 H 1.07999 * 119.66966 * 180.27839 * 9 8 7 36 36 H 0.96992 * 120.00114 * 359.97438 * 13 11 10 37 37 H 1.08999 * 113.62068 * 25.51049 * 16 14 13 38 38 H 1.09003 * 113.69391 * 254.62030 * 16 14 13 39 39 H 1.07992 * 119.99701 * 359.97271 * 20 19 17 40 40 H 1.08000 * 120.00356 * 179.97438 * 21 20 19 41 41 H 1.08000 * 120.00616 * 179.70664 * 22 21 20 42 42 H 1.08001 * 120.00279 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.00440 * 0.02562 * 24 19 17 44 44 H 1.08996 * 113.61915 * 139.97608 * 25 17 16 45 45 H 1.09005 * 113.61467 * 270.88939 * 25 17 16 46 46 H 1.08009 * 120.30585 * 180.27549 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4613 -0.1389 -2.3227 6 7 2.8036 -1.1007 -3.2342 7 6 2.4964 -2.3456 -2.7408 8 6 2.6351 -3.6352 -3.2497 9 6 2.2359 -4.7109 -2.5129 10 6 1.6719 -4.5369 -1.2416 11 6 1.2398 -5.7122 -0.4591 12 8 0.7551 -5.5623 0.6457 13 7 1.3828 -6.9514 -0.9698 14 6 0.9546 -8.1175 -0.1932 15 1 0.1940 -7.8756 0.5491 16 6 0.6042 -9.3391 -1.0590 17 6 1.2989 -10.1980 0.0107 18 1 0.6321 -10.5262 0.8081 19 6 2.1256 -11.3213 -0.5602 20 6 1.8302 -12.6318 -0.2341 21 6 2.5881 -13.6621 -0.7582 22 6 3.6412 -13.3821 -1.6088 23 6 3.9359 -12.0718 -1.9357 24 6 3.1789 -11.0412 -1.4104 25 6 2.1208 -8.9483 0.3679 26 6 1.5239 -3.2576 -0.7138 27 6 1.9358 -2.1579 -1.4618 28 1 -0.3933 0.4418 0.7650 29 1 1.7923 -0.5139 0.8900 30 1 1.5616 2.4678 -1.2086 31 1 1.5880 2.4585 1.2241 32 1 2.5975 0.9235 -2.4620 33 1 3.2048 -0.9288 -4.1005 34 1 3.0647 -3.7838 -4.2295 35 1 2.3519 -5.7067 -2.9145 36 1 1.7692 -7.0710 -1.8514 37 1 1.1103 -9.3500 -2.0242 38 1 -0.4667 -9.5254 -1.1406 39 1 1.0073 -12.8505 0.4302 40 1 2.3576 -14.6860 -0.5031 41 1 4.2364 -14.1868 -2.0146 42 1 4.7584 -11.8529 -2.6007 43 1 3.4097 -10.0175 -1.6653 44 1 2.2741 -8.8179 1.4391 45 1 3.0417 -8.8523 -0.2074 46 1 1.0939 -3.1191 0.2673 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13287722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:46 Heat of formation + Delta-G solvation = 50.034227 kcal Electronic energy + Delta-G solvation = -28735.881882 eV Core-core repulsion = 24751.076344 eV Total energy + Delta-G solvation = -3984.805538 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.45712 -41.47893 -40.37358 -38.76049 -37.95396 -37.46774 -34.80812 -33.38139 -31.92045 -31.69592 -30.81479 -30.39364 -26.70136 -26.47499 -26.32534 -24.53588 -23.55030 -23.46538 -22.35586 -21.55734 -20.73168 -20.21601 -19.06543 -18.51861 -18.38367 -18.18957 -17.26617 -17.07805 -16.46963 -16.11425 -16.07597 -15.84803 -15.54569 -15.35129 -15.26016 -15.00966 -14.86135 -14.79559 -14.29207 -14.18181 -14.15044 -13.92388 -13.76665 -13.47124 -13.43197 -13.15015 -12.79336 -12.58837 -12.52527 -12.28658 -12.15504 -11.82550 -11.79745 -11.65285 -11.44782 -11.00459 -10.79557 -10.37905 -10.12015 -9.79175 -9.53141 -9.32737 -8.81690 -4.88826 -0.15657 0.20393 0.45486 0.52750 1.33266 1.48202 1.63662 1.82971 1.96815 2.09077 2.14134 2.85169 2.88443 3.46161 3.52697 3.62800 3.68569 3.73354 3.75791 3.80979 3.94649 4.02660 4.07176 4.13385 4.16545 4.20184 4.26369 4.31730 4.41838 4.53013 4.56398 4.60805 4.64547 4.71158 4.74524 4.80080 4.84319 4.98331 5.00242 5.02447 5.12385 5.19389 5.23433 5.27622 5.34576 5.47223 5.56576 5.56856 5.61314 5.66966 5.76441 5.97964 6.15004 6.51924 6.57934 6.63138 7.18815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.066 4.066 3 Si 0.785 3.215 4 C -0.182 4.182 5 C 0.079 3.921 6 N -0.571 5.571 7 C 0.111 3.889 8 C -0.125 4.125 9 C -0.066 4.066 10 C -0.179 4.179 11 C 0.561 3.439 12 O -0.589 6.589 13 N -0.700 5.700 14 C 0.118 3.882 15 H 0.095 0.905 16 C -0.122 4.122 17 C -0.067 4.067 18 H 0.103 0.897 19 C -0.076 4.076 20 C -0.131 4.131 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.140 4.140 26 C -0.021 4.021 27 C -0.129 4.129 28 H 0.390 0.610 29 H 0.069 0.931 30 H -0.277 1.277 31 H -0.293 1.293 32 H 0.205 0.795 33 H 0.439 0.561 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.415 0.585 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.985 0.648 -6.415 8.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.173 4.173 3 Si 0.688 3.312 4 C -0.189 4.189 5 C -0.048 4.048 6 N -0.175 5.175 7 C 0.001 3.999 8 C -0.145 4.145 9 C -0.086 4.086 10 C -0.183 4.183 11 C 0.351 3.649 12 O -0.471 6.471 13 N -0.352 5.352 14 C 0.013 3.987 15 H 0.114 0.886 16 C -0.160 4.160 17 C -0.086 4.086 18 H 0.122 0.878 19 C -0.076 4.076 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.179 4.179 26 C -0.040 4.040 27 C -0.134 4.134 28 H 0.239 0.761 29 H 0.088 0.912 30 H -0.204 1.204 31 H -0.220 1.220 32 H 0.222 0.778 33 H 0.281 0.719 34 H 0.181 0.819 35 H 0.179 0.821 36 H 0.254 0.746 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.082 0.918 45 H 0.117 0.883 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.583 1.303 -6.330 8.540 hybrid contribution -1.174 -0.288 0.415 1.278 sum 4.409 1.015 -5.915 7.447 Atomic orbital electron populations 1.86585 1.19455 1.80803 1.50500 1.24558 0.83305 1.12435 0.96993 0.94120 0.89637 0.70231 0.77243 1.19823 1.09892 0.91122 0.98078 1.22080 0.99104 0.95565 0.88091 1.41720 1.53932 1.03176 1.18628 1.18650 0.99802 0.87892 0.93511 1.20072 1.04434 0.87842 1.02126 1.20891 0.95832 1.00223 0.91622 1.19591 1.08958 0.92192 0.97586 1.18513 0.77101 0.84130 0.85167 1.90752 1.46993 1.86836 1.22486 1.45737 1.63397 1.04546 1.21479 1.22512 0.97660 0.83335 0.95215 0.88645 1.23400 1.02075 0.92305 0.98220 1.21295 0.97116 0.91525 0.98676 0.87832 1.19780 0.96347 0.94026 0.97487 1.21309 1.00387 0.92549 1.00646 1.21419 0.95927 0.99900 0.97631 1.21454 0.98036 0.97490 0.98598 1.21442 1.00122 0.92879 1.00114 1.21225 0.95401 1.00045 0.97535 1.23597 0.98320 0.94162 1.01822 1.20586 0.94375 0.90682 0.98406 1.19200 1.05220 0.93411 0.95573 0.76083 0.91245 1.20391 1.21990 0.77810 0.71930 0.81944 0.82067 0.74608 0.87843 0.89979 0.85282 0.85030 0.84970 0.84539 0.84564 0.91758 0.88304 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.06 12.86 -148.98 -1.92 -5.98 16 2 C -0.07 -0.22 3.05 71.23 0.22 0.00 16 3 Si 0.79 -1.87 30.80 68.60 2.11 0.24 16 4 C -0.18 -0.86 5.61 -18.61 -0.10 -0.97 16 5 C 0.08 -0.14 10.43 82.99 0.87 0.73 16 6 N -0.57 2.15 6.05 -187.49 -1.13 1.02 16 7 C 0.11 0.19 7.27 39.19 0.28 0.47 16 8 C -0.12 0.30 10.00 22.09 0.22 0.52 16 9 C -0.07 0.08 9.46 22.30 0.21 0.29 16 10 C -0.18 -1.21 5.87 -20.09 -0.12 -1.33 16 11 C 0.56 5.22 7.76 86.73 0.67 5.89 16 12 O -0.59 -10.93 15.93 -3.96 -0.06 -10.99 16 13 N -0.70 -0.73 5.31 -443.07 -2.35 -3.09 16 14 C 0.12 0.15 4.24 45.52 0.19 0.34 16 15 H 0.10 0.60 7.46 -2.39 -0.02 0.58 16 16 C -0.12 0.37 7.30 31.12 0.23 0.59 16 17 C -0.07 0.09 3.98 -11.02 -0.04 0.04 16 18 H 0.10 -0.16 8.09 -2.39 -0.02 -0.18 16 19 C -0.08 -0.05 5.29 -19.86 -0.11 -0.15 16 20 C -0.13 -0.20 9.71 22.27 0.22 0.02 16 21 C -0.13 -0.18 10.05 22.27 0.22 0.04 16 22 C -0.14 -0.12 10.05 22.27 0.22 0.11 16 23 C -0.13 0.01 10.05 22.27 0.22 0.24 16 24 C -0.12 0.07 8.61 22.27 0.19 0.26 16 25 C -0.14 0.00 7.26 31.12 0.23 0.23 16 26 C -0.02 -0.22 9.64 22.74 0.22 -0.01 16 27 C -0.13 -1.01 6.34 -20.21 -0.13 -1.14 16 28 H 0.39 -0.31 8.74 -74.06 -0.65 -0.96 16 29 H 0.07 0.20 7.96 -2.39 -0.02 0.18 16 30 H -0.28 -0.38 7.04 99.48 0.70 0.32 16 31 H -0.29 -0.86 7.11 99.48 0.71 -0.15 16 32 H 0.21 -1.70 6.30 -2.91 -0.02 -1.71 16 33 H 0.44 -4.94 8.96 -92.70 -0.83 -5.77 16 34 H 0.16 -1.55 8.06 -2.91 -0.02 -1.57 16 35 H 0.16 -1.45 6.36 -2.91 -0.02 -1.47 16 36 H 0.42 -2.47 6.73 -92.71 -0.62 -3.10 16 37 H 0.10 -0.59 7.70 -2.39 -0.02 -0.60 16 38 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.13 -0.13 8.05 -2.91 -0.02 -0.15 16 40 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 41 H 0.13 -0.31 8.06 -2.91 -0.02 -0.34 16 42 H 0.14 -0.53 8.06 -2.91 -0.02 -0.56 16 43 H 0.14 -0.62 6.66 -2.91 -0.02 -0.64 16 44 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.10 -0.19 6.31 -2.38 -0.02 -0.21 16 46 H 0.11 1.62 7.64 -2.91 -0.02 1.59 16 Total: 0.00 -27.25 382.55 -0.45 -27.71 By element: Atomic # 1 Polarization: -14.06 SS G_CDS: -1.02 Total: -15.08 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 3.92 Total: 6.17 kcal Atomic # 7 Polarization: 1.42 SS G_CDS: -3.49 Total: -2.07 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -1.98 Total: -16.97 kcal Atomic # 14 Polarization: -1.87 SS G_CDS: 2.11 Total: 0.24 kcal Total: -27.25 -0.45 -27.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13287722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.742 kcal (2) G-P(sol) polarization free energy of solvation -27.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds