Wall clock time and date at job start Sun Mar 7 2021 08:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.38561 * 120.32661 * 119.71758 * 4 2 1 6 6 N 1.31515 * 120.90103 * 179.72245 * 5 4 2 7 7 C 1.32712 * 121.64828 * 0.58825 * 6 5 4 8 8 C 1.48171 * 119.72968 * 179.70189 * 7 6 5 9 9 O 1.21507 * 120.00567 * 179.97438 * 8 7 6 10 10 N 1.34779 * 119.99625 * 359.97438 * 8 7 6 11 11 C 1.46494 * 119.99973 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.85462 * 25.32614 * 11 10 8 13 13 C 1.53780 * 113.61818 * 156.52806 * 11 10 8 14 14 C 1.53778 * 87.08587 * 139.97760 * 13 11 10 15 15 H 1.09003 * 113.61772 * 89.19602 * 14 13 11 16 16 C 1.50700 * 113.61765 * 220.01956 * 14 13 11 17 17 C 1.38241 * 119.99751 * 59.72693 * 16 14 13 18 18 C 1.38232 * 119.99850 * 179.81105 * 17 16 14 19 19 C 1.38239 * 119.99895 * 0.41669 * 18 17 16 20 20 C 1.38231 * 119.99998 * 359.81619 * 19 18 17 21 21 C 1.38227 * 120.00135 * 240.00169 * 16 14 13 22 22 C 1.53783 * 113.61046 * 254.13525 * 11 10 8 23 23 C 1.39314 * 120.55194 * 359.68137 * 7 6 5 24 24 C 1.38591 * 119.05498 * 0.02562 * 23 7 6 25 25 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 26 26 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 27 27 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 28 28 H 1.48492 * 109.99800 * 181.32238 * 3 2 1 29 29 H 1.07998 * 119.54105 * 0.02562 * 5 4 2 30 30 H 0.96997 * 120.00013 * 359.97438 * 10 8 7 31 31 H 1.09000 * 113.61689 * 254.52802 * 13 11 10 32 32 H 1.09000 * 113.61263 * 25.34697 * 13 11 10 33 33 H 1.07997 * 119.99723 * 359.97438 * 17 16 14 34 34 H 1.07998 * 120.00163 * 180.20824 * 18 17 16 35 35 H 1.07999 * 119.99797 * 179.78922 * 19 18 17 36 36 H 1.07995 * 120.00154 * 179.97438 * 20 19 18 37 37 H 1.08006 * 120.00180 * 359.97225 * 21 16 14 38 38 H 1.08994 * 113.61929 * 334.55982 * 22 11 10 39 39 H 1.09000 * 113.61475 * 105.47567 * 22 11 10 40 40 H 1.07994 * 120.47119 * 180.02562 * 23 7 6 41 41 H 1.08005 * 120.75279 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.7235 -0.0418 -2.1499 6 7 3.1725 -0.6522 -3.2248 7 6 2.8789 -1.9213 -3.4787 8 6 3.4024 -2.5651 -4.7062 9 8 3.1370 -3.7269 -4.9435 10 7 4.1729 -1.8621 -5.5598 11 6 4.6900 -2.4985 -6.7737 12 1 4.0742 -3.3328 -7.1096 13 6 5.0389 -1.5014 -7.8913 14 6 6.2771 -2.3692 -8.1715 15 1 6.0967 -3.1681 -8.8908 16 6 7.5164 -1.5704 -8.4828 17 6 8.0120 -0.6738 -7.5546 18 6 9.1511 0.0561 -7.8386 19 6 9.7896 -0.1042 -9.0541 20 6 9.2912 -0.9973 -9.9841 21 6 8.1543 -1.7300 -9.6986 22 6 6.1903 -2.8290 -6.7046 23 6 2.0829 -2.6533 -2.6005 24 6 1.6005 -2.0374 -1.4565 25 1 -0.3934 0.4416 -0.7651 26 1 1.7924 -0.5138 0.8900 27 1 1.5613 2.4680 1.2084 28 1 3.5344 1.7705 -0.0322 29 1 2.9797 0.9934 -1.9789 30 1 4.3844 -0.9346 -5.3706 31 1 4.3181 -1.4921 -8.7089 32 1 5.2778 -0.5025 -7.5263 33 1 7.5108 -0.5456 -6.6067 34 1 9.5402 0.7542 -7.1122 35 1 10.6776 0.4686 -9.2773 36 1 9.7898 -1.1223 -10.9339 37 1 7.7648 -2.4276 -10.4254 38 1 6.7460 -2.1941 -6.0146 39 1 6.3977 -3.8900 -6.5658 40 1 1.8451 -3.6861 -2.8082 41 1 0.9808 -2.5790 -0.7572 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:50 Heat of formation + Delta-G solvation = 27.657500 kcal Electronic energy + Delta-G solvation = -24100.634117 eV Core-core repulsion = 20526.848152 eV Total energy + Delta-G solvation = -3573.785965 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97570 -41.20369 -40.08777 -38.68707 -37.85497 -34.95733 -33.66154 -32.99100 -31.83964 -31.57364 -28.05405 -26.72238 -25.96111 -25.01085 -23.92871 -23.53600 -22.46285 -21.71379 -20.52480 -19.09742 -18.64499 -18.20830 -17.59794 -16.95143 -16.62726 -16.46518 -16.42340 -16.20877 -15.94952 -15.76854 -15.33678 -15.17561 -14.59688 -14.36933 -14.32812 -14.25024 -14.13492 -13.92034 -13.54209 -13.46288 -13.13204 -12.56817 -12.53709 -12.33267 -12.16480 -11.83178 -11.70194 -11.49277 -11.34004 -11.07782 -10.68372 -10.59898 -10.32364 -10.05833 -9.80579 -9.54225 -5.00240 -0.61281 0.06697 0.44008 0.51337 1.24803 1.51465 1.63764 1.96099 1.97803 2.64914 2.84630 2.93366 3.42170 3.44837 3.50645 3.62601 3.69318 3.73636 3.79230 3.92845 3.94627 4.05466 4.11262 4.15398 4.19121 4.30459 4.40915 4.54510 4.56889 4.62840 4.68158 4.73341 4.82206 4.87628 4.96513 4.97980 5.00714 5.10399 5.17225 5.21485 5.36785 5.49531 5.59998 5.65561 5.74996 6.13652 6.27217 6.60227 6.71475 7.03027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.070 4.070 3 Si 0.775 3.225 4 C -0.142 4.142 5 C 0.101 3.899 6 N -0.459 5.459 7 C 0.063 3.937 8 C 0.569 3.431 9 O -0.567 6.567 10 N -0.688 5.688 11 C 0.116 3.884 12 H 0.105 0.895 13 C -0.122 4.122 14 C -0.065 4.065 15 H 0.109 0.891 16 C -0.077 4.077 17 C -0.126 4.126 18 C -0.129 4.129 19 C -0.138 4.138 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.116 4.116 24 C -0.054 4.054 25 H 0.398 0.602 26 H 0.119 0.881 27 H -0.297 1.297 28 H -0.277 1.277 29 H 0.187 0.813 30 H 0.420 0.580 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.148 0.852 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.304 4.857 -0.892 4.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.180 4.180 3 Si 0.680 3.320 4 C -0.144 4.144 5 C -0.059 4.059 6 N -0.170 5.170 7 C -0.074 4.074 8 C 0.354 3.646 9 O -0.446 6.446 10 N -0.338 5.338 11 C 0.012 3.988 12 H 0.123 0.877 13 C -0.160 4.160 14 C -0.084 4.084 15 H 0.127 0.873 16 C -0.077 4.077 17 C -0.143 4.143 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.181 4.181 23 C -0.137 4.137 24 C -0.079 4.079 25 H 0.248 0.752 26 H 0.136 0.864 27 H -0.224 1.224 28 H -0.204 1.204 29 H 0.204 0.796 30 H 0.258 0.742 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.166 0.834 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.609 4.739 -0.755 4.837 hybrid contribution -0.203 -0.887 0.921 1.295 sum 0.406 3.852 0.166 3.877 Atomic orbital electron populations 1.86508 1.16665 1.82113 1.50599 1.25172 0.85633 1.10993 0.96202 0.93756 0.78157 0.74559 0.85538 1.21772 0.98503 0.95753 0.98418 1.23018 0.93585 1.00571 0.88685 1.67492 1.20501 1.08680 1.20295 1.21091 0.98912 0.91371 0.96025 1.18145 0.78220 0.85347 0.82850 1.90783 1.60351 1.17632 1.75843 1.45800 1.49737 1.16316 1.21972 1.22641 0.94327 0.97490 0.84378 0.87681 1.23384 0.96709 0.98338 0.97579 1.21338 0.92015 0.97907 0.97155 0.87292 1.19793 0.96487 0.97079 0.94353 1.21203 0.96823 0.96563 0.99752 1.21426 0.95961 0.99862 0.97487 1.21452 1.00715 0.99054 0.94331 1.21435 0.96653 0.96565 1.00161 1.21325 0.96085 1.00250 0.97004 1.23622 0.95764 1.02222 0.96452 1.22285 0.95585 1.02069 0.93783 1.21721 0.96242 0.94036 0.95920 0.75214 0.86367 1.22419 1.20409 0.79641 0.74224 0.89473 0.88380 0.85052 0.84795 0.84955 0.84857 0.84945 0.88958 0.91320 0.83427 0.82246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.26 12.78 -148.98 -1.90 0.36 16 2 C -0.07 0.35 2.83 71.23 0.20 0.56 16 3 Si 0.77 -5.00 29.82 68.60 2.05 -2.95 16 4 C -0.14 0.47 5.40 -19.70 -0.11 0.37 16 5 C 0.10 -0.30 9.84 84.82 0.83 0.53 16 6 N -0.46 -0.51 9.54 -184.92 -1.76 -2.28 16 7 C 0.06 0.26 6.75 41.91 0.28 0.54 16 8 C 0.57 3.90 7.81 86.88 0.68 4.58 16 9 O -0.57 -7.62 15.94 -3.74 -0.06 -7.68 16 10 N -0.69 -1.01 5.35 -442.61 -2.37 -3.37 16 11 C 0.12 0.03 4.21 45.52 0.19 0.22 16 12 H 0.11 0.35 7.50 -2.39 -0.02 0.34 16 13 C -0.12 0.40 7.29 31.12 0.23 0.63 16 14 C -0.07 0.12 3.98 -10.95 -0.04 0.08 16 15 H 0.11 -0.33 8.09 -2.39 -0.02 -0.35 16 16 C -0.08 -0.06 5.29 -19.87 -0.11 -0.16 16 17 C -0.13 -0.07 8.60 22.27 0.19 0.12 16 18 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 19 C -0.14 -0.18 10.05 22.27 0.22 0.05 16 20 C -0.13 -0.17 10.05 22.27 0.22 0.05 16 21 C -0.13 -0.16 9.71 22.27 0.22 0.06 16 22 C -0.14 0.04 7.27 31.18 0.23 0.27 16 23 C -0.12 -0.28 9.63 22.61 0.22 -0.06 16 24 C -0.05 0.08 9.76 22.45 0.22 0.30 16 25 H 0.40 -4.74 8.70 -74.06 -0.64 -5.39 16 26 H 0.12 -0.53 7.96 -2.39 -0.02 -0.55 16 27 H -0.30 -0.50 7.11 99.48 0.71 0.21 16 28 H -0.28 0.60 7.11 99.48 0.71 1.30 16 29 H 0.19 -1.57 4.89 -2.91 -0.01 -1.59 16 30 H 0.42 -0.80 8.04 -92.71 -0.75 -1.55 16 31 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.10 -0.43 7.69 -2.39 -0.02 -0.45 16 33 H 0.13 -0.32 6.68 -2.91 -0.02 -0.34 16 34 H 0.13 -0.33 8.06 -2.91 -0.02 -0.36 16 35 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 36 H 0.13 -0.26 8.06 -2.91 -0.02 -0.29 16 37 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 38 H 0.09 -0.07 6.34 -2.39 -0.02 -0.08 16 39 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.15 0.40 7.64 -2.91 -0.02 0.38 16 41 H 0.16 -0.67 8.06 -2.91 -0.02 -0.70 16 Total: 0.00 -17.51 346.28 -0.42 -17.93 By element: Atomic # 1 Polarization: -9.97 SS G_CDS: -0.28 Total: -10.25 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 3.90 Total: 8.23 kcal Atomic # 7 Polarization: -1.52 SS G_CDS: -4.13 Total: -5.65 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -1.96 Total: -7.32 kcal Atomic # 14 Polarization: -5.00 SS G_CDS: 2.05 Total: -2.95 kcal Total: -17.51 -0.42 -17.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.592 kcal (2) G-P(sol) polarization free energy of solvation -17.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds