Wall clock time and date at job start Sun Mar 7 2021 08:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34663 * 124.85091 * 2 1 4 4 C 1.36765 * 108.39517 * 180.15067 * 3 2 1 5 5 C 1.47267 * 126.94022 * 179.83487 * 4 3 2 6 6 O 1.21631 * 119.99909 * 179.68500 * 5 4 3 7 7 N 1.34777 * 119.99881 * 359.69138 * 5 4 3 8 8 C 1.46500 * 119.99778 * 180.02562 * 7 5 4 9 9 H 1.09002 * 112.85337 * 23.80054 * 8 7 5 10 10 C 1.53782 * 113.61532 * 154.99542 * 8 7 5 11 11 C 1.53781 * 87.08109 * 140.06352 * 10 8 7 12 12 H 1.08997 * 113.61665 * 89.20269 * 11 10 8 13 13 C 1.50706 * 113.61422 * 220.02323 * 11 10 8 14 14 C 1.38233 * 120.00109 * 59.72450 * 13 11 10 15 15 C 1.38238 * 119.99749 * 179.78525 * 14 13 11 16 16 C 1.38234 * 120.00078 * 0.44989 * 15 14 13 17 17 C 1.38238 * 120.00032 * 359.80374 * 16 15 14 18 18 C 1.38235 * 120.00123 * 359.97438 * 17 16 15 19 19 C 1.53779 * 87.08357 * 334.56759 * 11 10 8 20 20 C 1.46687 * 106.11746 * 359.57551 * 4 3 2 21 21 C 1.34484 * 106.32942 * 0.25850 * 20 4 3 22 22 C 1.50702 * 125.56758 * 179.97438 * 21 20 4 23 23 O 1.42902 * 109.47211 * 210.02560 * 22 21 20 24 24 Si 1.86296 * 109.47292 * 330.02891 * 22 21 20 25 25 H 1.08999 * 109.46888 * 270.33512 * 1 2 3 26 26 H 1.08997 * 109.47321 * 30.32944 * 1 2 3 27 27 H 1.08998 * 109.47540 * 150.33754 * 1 2 3 28 28 H 1.08000 * 125.79832 * 0.02562 * 3 2 1 29 29 H 0.97004 * 120.00131 * 359.97438 * 7 5 4 30 30 H 1.09001 * 113.61345 * 25.51553 * 10 8 7 31 31 H 1.08994 * 113.61860 * 254.61628 * 10 8 7 32 32 H 1.08004 * 119.99934 * 0.02562 * 14 13 11 33 33 H 1.07999 * 119.99925 * 180.27297 * 15 14 13 34 34 H 1.08002 * 120.00276 * 179.83134 * 16 15 14 35 35 H 1.08000 * 120.00524 * 180.02562 * 17 16 15 36 36 H 1.07999 * 120.00181 * 179.97438 * 18 17 16 37 37 H 1.08997 * 113.61483 * 139.97846 * 19 11 10 38 38 H 1.09001 * 113.61530 * 270.88698 * 19 11 10 39 39 H 1.07998 * 126.83239 * 180.22501 * 20 4 3 40 40 H 1.09002 * 109.47182 * 90.03241 * 22 21 20 41 41 H 0.96708 * 113.99431 * 60.00431 * 23 22 21 42 42 H 1.48506 * 110.00127 * 179.97438 * 24 22 21 43 43 H 1.48502 * 109.99994 * 301.31516 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5461 0.7177 -0.0034 5 6 4.7284 1.5958 -0.0080 6 8 5.8447 1.1128 -0.0050 7 7 4.5733 2.9346 -0.0156 8 6 5.7494 3.8081 -0.0207 9 1 6.6371 3.3205 -0.4235 10 6 5.4824 5.1972 -0.6241 11 6 6.3688 5.7673 0.4958 12 1 7.4257 5.8167 0.2337 13 6 5.8498 7.0562 1.0794 14 6 4.6005 7.0940 1.6699 15 6 4.1264 8.2752 2.2092 16 6 4.8977 9.4208 2.1497 17 6 6.1448 9.3843 1.5545 18 6 6.6209 8.2020 1.0193 19 6 5.9936 4.5235 1.3185 20 6 3.5375 -0.7491 0.0048 21 6 2.2447 -1.1197 0.0066 22 6 1.7398 -2.5396 0.0139 23 8 0.4812 -2.6011 -0.6601 24 14 2.9654 -3.6390 -0.8577 25 1 -0.3633 0.0060 1.0276 26 1 -0.3634 0.8870 -0.5189 27 1 -0.3634 -0.8930 -0.5086 28 1 1.8767 2.1241 0.0004 29 1 3.6830 3.3198 -0.0183 30 1 4.4401 5.5092 -0.5575 31 1 5.9013 5.3278 -1.6218 32 1 3.9965 6.1996 1.7134 33 1 3.1522 8.3036 2.6745 34 1 4.5261 10.3443 2.5686 35 1 6.7476 10.2792 1.5084 36 1 7.5951 8.1736 0.5539 37 1 6.8253 4.1102 1.8890 38 1 5.0911 4.6513 1.9162 39 1 4.3981 -1.4016 0.0082 40 1 1.6174 -2.8764 1.0433 41 1 0.5151 -2.3150 -1.5833 42 1 2.4794 -5.0423 -0.8567 43 1 3.1650 -3.1711 -2.2528 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13287730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:52 Heat of formation + Delta-G solvation = 41.981053 kcal Electronic energy + Delta-G solvation = -24865.890757 eV Core-core repulsion = 21265.414429 eV Total energy + Delta-G solvation = -3600.476328 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.45849 -41.30207 -39.98498 -38.55800 -37.93672 -34.69344 -33.69587 -31.95975 -31.72708 -31.08859 -27.70110 -26.66728 -26.56495 -25.64547 -23.78504 -23.48891 -22.11267 -21.16496 -20.67418 -20.16265 -18.93680 -18.14182 -17.40791 -17.13918 -16.78688 -16.67760 -16.39847 -15.93583 -15.76773 -15.58876 -15.42694 -15.19705 -14.96128 -14.56442 -14.26191 -14.16078 -14.10555 -13.87947 -13.46822 -13.42134 -13.22446 -13.14329 -12.95563 -12.51631 -12.34668 -12.27624 -11.97651 -11.77009 -11.63282 -11.41255 -10.92317 -10.89092 -10.04954 -9.79284 -9.56501 -9.50688 -9.20074 -4.89168 0.45508 0.52599 0.75057 1.03530 1.45056 1.63300 1.81160 2.07020 2.33292 2.56554 2.86461 3.15911 3.50492 3.56809 3.74213 3.77822 3.89125 3.94772 3.98592 4.08222 4.16467 4.19902 4.30850 4.34894 4.44473 4.46115 4.51727 4.59792 4.64944 4.72983 4.76598 4.82751 4.86673 4.95537 4.98917 5.02676 5.05576 5.14067 5.20491 5.29433 5.59619 5.61462 5.66600 5.68669 5.77440 5.97281 6.15006 6.23742 6.32096 6.68093 7.37457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.427 5.427 3 C 0.070 3.930 4 C -0.261 4.261 5 C 0.588 3.412 6 O -0.594 6.594 7 N -0.706 5.706 8 C 0.121 3.879 9 H 0.096 0.904 10 C -0.122 4.122 11 C -0.068 4.068 12 H 0.103 0.897 13 C -0.076 4.076 14 C -0.124 4.124 15 C -0.128 4.128 16 C -0.139 4.139 17 C -0.131 4.131 18 C -0.131 4.131 19 C -0.141 4.141 20 C -0.156 4.156 21 C -0.024 4.024 22 C -0.043 4.043 23 O -0.539 6.539 24 Si 0.773 3.227 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.206 0.794 29 H 0.412 0.588 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.154 0.846 40 H 0.132 0.868 41 H 0.388 0.612 42 H -0.288 1.288 43 H -0.294 1.294 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.581 3.407 0.248 6.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.101 5.101 3 C -0.067 4.067 4 C -0.271 4.271 5 C 0.378 3.622 6 O -0.475 6.475 7 N -0.356 5.356 8 C 0.016 3.984 9 H 0.114 0.886 10 C -0.160 4.160 11 C -0.087 4.087 12 H 0.122 0.878 13 C -0.076 4.076 14 C -0.142 4.142 15 C -0.146 4.146 16 C -0.156 4.156 17 C -0.149 4.149 18 C -0.149 4.149 19 C -0.179 4.179 20 C -0.180 4.180 21 C -0.133 4.133 22 C -0.153 4.153 23 O -0.347 6.347 24 Si 0.677 3.323 25 H 0.097 0.903 26 H 0.123 0.877 27 H 0.129 0.871 28 H 0.223 0.777 29 H 0.249 0.751 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.172 0.828 40 H 0.150 0.850 41 H 0.238 0.762 42 H -0.215 1.215 43 H -0.221 1.221 Dipole moment (debyes) X Y Z Total from point charges -5.246 2.270 0.152 5.718 hybrid contribution -0.885 0.734 -0.592 1.293 sum -6.131 3.004 -0.440 6.842 Atomic orbital electron populations 1.22731 0.74681 1.07034 1.04919 1.43725 1.08008 1.04630 1.53693 1.22406 0.89100 0.93196 1.02043 1.20345 0.92211 0.93991 1.20575 1.17730 0.87789 0.82318 0.74351 1.90748 1.27716 1.76179 1.52881 1.45661 1.10136 1.04771 1.75051 1.22440 0.89558 0.89086 0.97314 0.88630 1.23391 1.01323 0.92694 0.98588 1.21305 1.00274 0.90434 0.96658 0.87839 1.19807 0.94688 0.94701 0.98428 1.21216 0.95801 0.98600 0.98577 1.21436 1.00600 0.92953 0.99649 1.21451 0.95018 0.99235 0.99944 1.21423 0.96568 0.98549 0.98341 1.21323 1.00463 0.92761 1.00350 1.23590 1.02512 0.94930 0.96905 1.21822 0.95578 0.93609 1.06953 1.20803 0.90453 0.89798 1.12266 1.24732 0.92448 0.94091 1.04022 1.86538 1.29619 1.88799 1.29729 0.93293 0.84551 0.74574 0.79907 0.90291 0.87720 0.87141 0.77686 0.75052 0.88037 0.90057 0.84609 0.84615 0.85008 0.85024 0.85224 0.91824 0.88532 0.82813 0.85016 0.76224 1.21503 1.22069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.38 10.71 127.77 1.37 0.99 16 2 N -0.43 1.11 3.09 -533.25 -1.65 -0.53 16 3 C 0.07 -0.21 10.83 83.91 0.91 0.70 16 4 C -0.26 -1.10 6.29 -19.04 -0.12 -1.22 16 5 C 0.59 4.55 7.81 86.62 0.68 5.23 16 6 O -0.59 -10.13 16.57 -4.13 -0.07 -10.20 16 7 N -0.71 0.07 5.35 -443.43 -2.37 -2.30 16 8 C 0.12 0.06 4.24 45.52 0.19 0.25 16 9 H 0.10 0.52 7.46 -2.39 -0.02 0.50 16 10 C -0.12 0.44 7.30 31.12 0.23 0.66 16 11 C -0.07 0.12 3.98 -11.01 -0.04 0.07 16 12 H 0.10 -0.20 8.09 -2.39 -0.02 -0.22 16 13 C -0.08 -0.03 5.29 -19.86 -0.11 -0.13 16 14 C -0.12 0.09 8.60 22.27 0.19 0.28 16 15 C -0.13 0.02 10.05 22.27 0.22 0.25 16 16 C -0.14 -0.10 10.05 22.27 0.22 0.12 16 17 C -0.13 -0.16 10.05 22.27 0.22 0.06 16 18 C -0.13 -0.17 9.71 22.27 0.22 0.05 16 19 C -0.14 0.06 7.26 31.12 0.23 0.29 16 20 C -0.16 -0.70 9.49 23.62 0.22 -0.47 16 21 C -0.02 -0.01 6.14 40.98 0.25 0.24 16 22 C -0.04 0.09 2.98 71.24 0.21 0.30 16 23 O -0.54 1.34 9.95 -148.98 -1.48 -0.15 16 24 Si 0.77 -0.62 31.12 68.60 2.13 1.51 16 25 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H 0.10 -1.32 8.13 -2.39 -0.02 -1.34 16 27 H 0.11 -0.87 4.94 -2.39 -0.01 -0.88 16 28 H 0.21 -2.38 7.45 -2.91 -0.02 -2.40 16 29 H 0.41 -2.93 7.67 -92.71 -0.71 -3.64 16 30 H 0.10 -0.62 7.69 -2.39 -0.02 -0.64 16 31 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.14 -0.64 6.67 -2.91 -0.02 -0.66 16 33 H 0.14 -0.54 8.06 -2.91 -0.02 -0.56 16 34 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 35 H 0.13 -0.24 8.06 -2.91 -0.02 -0.26 16 36 H 0.13 -0.17 8.05 -2.91 -0.02 -0.19 16 37 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.10 -0.21 6.32 -2.39 -0.02 -0.22 16 39 H 0.15 0.58 6.89 -2.91 -0.02 0.56 16 40 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 41 H 0.39 -2.80 8.38 -74.05 -0.62 -3.42 16 42 H -0.29 -1.43 7.11 99.48 0.71 -0.72 16 43 H -0.29 -1.59 7.11 99.48 0.71 -0.89 16 Total: 0.00 -22.12 355.37 1.41 -20.70 By element: Atomic # 1 Polarization: -16.45 SS G_CDS: -0.25 Total: -16.70 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 5.10 Total: 7.67 kcal Atomic # 7 Polarization: 1.19 SS G_CDS: -4.02 Total: -2.83 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -1.55 Total: -10.35 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: 2.13 Total: 1.51 kcal Total: -22.12 1.41 -20.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13287730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.684 kcal (2) G-P(sol) polarization free energy of solvation -22.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds