Wall clock time and date at job start Sun Mar 7 2021 08:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86297 * 109.46944 * 2 1 4 4 C 1.50696 * 109.47389 * 120.00728 * 2 1 3 5 5 C 1.34843 * 125.89678 * 217.30713 * 4 2 1 6 6 C 1.40944 * 107.46779 * 180.02562 * 5 4 2 7 7 C 1.34845 * 107.46739 * 0.02562 * 6 5 4 8 8 N 1.36566 * 125.90129 * 37.33146 * 4 2 1 9 9 C 1.40202 * 125.67069 * 359.95190 * 8 4 2 10 10 C 1.38826 * 120.07171 * 235.56394 * 9 8 4 11 11 C 1.38118 * 119.93561 * 179.76853 * 10 9 8 12 12 C 1.38283 * 120.06539 * 0.48716 * 11 10 9 13 13 C 1.50694 * 119.93252 * 179.76360 * 12 11 10 14 14 C 1.50700 * 109.47588 * 270.01982 * 13 12 11 15 15 O 1.21280 * 119.99641 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00107 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99685 * 180.02562 * 16 14 13 18 18 H 1.08998 * 112.85095 * 23.80775 * 17 16 14 19 19 C 1.53784 * 113.61082 * 155.00271 * 17 16 14 20 20 C 1.53788 * 87.07965 * 139.98126 * 19 17 16 21 21 H 1.09003 * 113.60986 * 89.11659 * 20 19 17 22 22 C 1.50694 * 113.61378 * 219.93122 * 20 19 17 23 23 C 1.38237 * 119.99914 * 59.72990 * 22 20 19 24 24 C 1.38236 * 120.00103 * 179.78635 * 23 22 20 25 25 C 1.38240 * 119.99649 * 0.46164 * 24 23 22 26 26 C 1.38230 * 120.00329 * 359.76890 * 25 24 23 27 27 C 1.38232 * 120.00357 * 240.00158 * 22 20 19 28 28 C 1.53778 * 87.07888 * 334.56727 * 20 19 17 29 29 C 1.38274 * 120.13202 * 359.78804 * 12 11 10 30 30 C 1.38129 * 120.06358 * 359.95757 * 29 12 11 31 31 H 0.96696 * 113.99934 * 305.50076 * 1 2 3 32 32 H 1.09007 * 109.46515 * 240.00719 * 2 1 3 33 33 H 1.48506 * 109.99829 * 178.68254 * 3 2 1 34 34 H 1.48500 * 110.00371 * 300.00448 * 3 2 1 35 35 H 1.07999 * 126.27206 * 359.75521 * 5 4 2 36 36 H 1.08001 * 126.26369 * 179.97438 * 6 5 4 37 37 H 1.08004 * 125.90146 * 179.97438 * 7 6 5 38 38 H 1.07999 * 120.02763 * 0.02562 * 10 9 8 39 39 H 1.08001 * 119.97089 * 180.23258 * 11 10 9 40 40 H 1.09001 * 109.47505 * 30.02465 * 13 12 11 41 41 H 1.09008 * 109.46871 * 150.02064 * 13 12 11 42 42 H 0.96994 * 120.00543 * 0.02562 * 16 14 13 43 43 H 1.09000 * 113.61665 * 254.52768 * 19 17 16 44 44 H 1.08997 * 113.61740 * 25.43496 * 19 17 16 45 45 H 1.08001 * 120.00203 * 359.97438 * 23 22 20 46 46 H 1.07998 * 120.00242 * 180.25449 * 24 23 22 47 47 H 1.08002 * 119.99696 * 179.78883 * 25 24 23 48 48 H 1.07993 * 120.00269 * 180.02562 * 26 25 24 49 49 H 1.08000 * 120.00109 * 359.97438 * 27 22 20 50 50 H 1.08997 * 113.61585 * 270.88236 * 28 20 19 51 51 H 1.08999 * 113.61024 * 139.98354 * 28 20 19 52 52 H 1.07998 * 119.96900 * 179.97438 * 29 12 11 53 53 H 1.07999 * 120.03282 * 179.97438 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 3.0141 -0.3651 1.9561 6 6 3.1261 -1.2889 3.0147 7 6 2.1080 -2.1652 2.8966 8 7 1.3691 -1.8157 1.8026 9 6 0.2236 -2.4810 1.3432 10 6 -0.8565 -2.6744 2.1936 11 6 -1.9854 -3.3259 1.7367 12 6 -2.0365 -3.7944 0.4366 13 6 -3.2675 -4.5096 -0.0572 14 6 -3.1287 -5.9873 0.2037 15 8 -2.1287 -6.4173 0.7384 16 7 -4.1163 -6.8309 -0.1563 17 6 -3.9814 -8.2674 0.0978 18 1 -3.2896 -8.4904 0.9100 19 6 -5.3278 -9.0009 0.2165 20 6 -4.6834 -10.1483 -0.5792 21 1 -4.1829 -10.8867 0.0473 22 6 -5.6061 -10.7714 -1.5947 23 6 -6.1408 -9.9987 -2.6085 24 6 -6.9837 -10.5712 -3.5427 25 6 -7.2994 -11.9144 -3.4574 26 6 -6.7685 -12.6860 -2.4408 27 6 -5.9222 -12.1144 -1.5092 28 6 -3.7310 -9.0969 -1.1726 29 6 -0.9599 -3.6084 -0.4110 30 6 0.1697 -2.9528 0.0387 31 1 -0.3933 0.5130 0.7192 32 1 1.7922 -0.5138 -0.8901 33 1 3.5346 1.7703 0.0321 34 1 1.5614 2.4680 -1.2084 35 1 3.6769 0.4645 1.7595 36 1 3.8883 -1.2944 3.7798 37 1 1.9108 -2.9992 3.5539 38 1 -0.8157 -2.3119 3.2101 39 1 -2.8275 -3.4733 2.3966 40 1 -4.1439 -4.1288 0.4673 41 1 -3.3822 -4.3388 -1.1277 42 1 -4.9162 -6.4870 -0.5836 43 1 -5.5888 -9.2718 1.2396 44 1 -6.1426 -8.5065 -0.3125 45 1 -5.8977 -8.9484 -2.6726 46 1 -7.3983 -9.9684 -4.3372 47 1 -7.9607 -12.3609 -4.1853 48 1 -7.0148 -13.7354 -2.3744 49 1 -5.5076 -12.7172 -0.7148 50 1 -4.1091 -8.6287 -2.0813 51 1 -2.7028 -9.4452 -1.2710 52 1 -1.0025 -3.9757 -1.4257 53 1 1.0104 -2.8082 -0.6237 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13287746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:57 Heat of formation + Delta-G solvation = 75.592022 kcal Electronic energy + Delta-G solvation = -34042.441148 eV Core-core repulsion = 29619.442501 eV Total energy + Delta-G solvation = -4422.998647 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.178 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.69632 -41.51980 -40.61258 -39.64741 -38.60164 -37.69039 -34.86880 -34.67159 -32.16301 -32.09130 -31.78850 -31.36755 -31.05015 -28.02105 -26.70532 -26.06887 -25.79952 -23.96429 -23.66183 -23.42961 -22.29882 -21.51924 -21.44930 -20.63751 -20.29403 -19.25297 -18.23042 -18.02540 -17.46143 -17.13749 -17.05953 -16.62650 -16.30546 -16.20681 -15.81937 -15.80458 -15.72489 -15.37429 -15.30076 -14.98301 -14.65775 -14.49931 -14.43647 -14.28915 -14.22527 -14.16383 -13.98466 -13.92069 -13.45887 -13.36343 -13.23649 -13.22565 -12.87148 -12.70553 -12.46652 -12.30101 -12.18083 -12.03168 -11.94705 -11.80247 -11.66241 -11.45129 -10.95047 -10.74327 -10.24272 -10.04014 -9.99002 -9.81600 -9.54744 -9.23301 -9.10084 -4.96564 0.01433 0.35295 0.43205 0.50247 1.07118 1.32794 1.63130 1.64241 1.86576 1.95404 2.08765 2.19157 2.73319 2.83870 3.39769 3.46955 3.62663 3.66831 3.68214 3.72666 3.76283 3.88239 3.91580 3.99780 4.06729 4.12666 4.14982 4.20496 4.23809 4.29645 4.32606 4.40761 4.48878 4.51094 4.55963 4.61479 4.62556 4.63725 4.70483 4.73996 4.82546 4.84925 4.96389 4.97320 5.01352 5.11259 5.17803 5.18250 5.20617 5.22342 5.25070 5.35262 5.50484 5.57344 5.59301 5.64755 5.73959 5.79682 5.91860 6.12679 6.16664 6.48935 6.57871 6.63668 7.28401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.054 4.054 3 Si 0.807 3.193 4 C -0.018 4.018 5 C -0.205 4.205 6 C -0.199 4.199 7 C -0.019 4.019 8 N -0.395 5.395 9 C 0.118 3.882 10 C -0.120 4.120 11 C -0.095 4.095 12 C -0.066 4.066 13 C -0.098 4.098 14 C 0.514 3.486 15 O -0.581 6.581 16 N -0.708 5.708 17 C 0.121 3.879 18 H 0.094 0.906 19 C -0.122 4.122 20 C -0.070 4.070 21 H 0.101 0.899 22 C -0.076 4.076 23 C -0.124 4.124 24 C -0.128 4.128 25 C -0.138 4.138 26 C -0.131 4.131 27 C -0.132 4.132 28 C -0.141 4.141 29 C -0.099 4.099 30 C -0.109 4.109 31 H 0.389 0.611 32 H 0.100 0.900 33 H -0.282 1.282 34 H -0.288 1.288 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.136 0.864 39 H 0.148 0.852 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.418 0.582 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.132 0.868 48 H 0.131 0.869 49 H 0.129 0.871 50 H 0.098 0.902 51 H 0.060 0.940 52 H 0.136 0.864 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.256 1.587 -0.029 7.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.163 4.163 3 Si 0.710 3.290 4 C -0.128 4.128 5 C -0.229 4.229 6 C -0.223 4.223 7 C -0.147 4.147 8 N -0.068 5.068 9 C 0.029 3.971 10 C -0.139 4.139 11 C -0.113 4.113 12 C -0.067 4.067 13 C -0.137 4.137 14 C 0.301 3.699 15 O -0.461 6.461 16 N -0.360 5.360 17 C 0.016 3.984 18 H 0.112 0.888 19 C -0.160 4.160 20 C -0.089 4.089 21 H 0.119 0.881 22 C -0.076 4.076 23 C -0.141 4.141 24 C -0.146 4.146 25 C -0.156 4.156 26 C -0.149 4.149 27 C -0.150 4.150 28 C -0.180 4.180 29 C -0.117 4.117 30 C -0.129 4.129 31 H 0.238 0.762 32 H 0.118 0.882 33 H -0.209 1.209 34 H -0.215 1.215 35 H 0.169 0.831 36 H 0.172 0.828 37 H 0.191 0.809 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.256 0.744 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.155 0.845 46 H 0.154 0.846 47 H 0.150 0.850 48 H 0.149 0.851 49 H 0.147 0.853 50 H 0.116 0.884 51 H 0.079 0.921 52 H 0.154 0.846 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.267 1.346 -0.687 6.447 hybrid contribution 0.275 -0.954 -0.386 1.065 sum -5.992 0.392 -1.073 6.100 Atomic orbital electron populations 1.86480 1.16939 1.76516 1.55346 1.25000 0.85468 1.11364 0.94448 0.93032 0.77971 0.73827 0.84212 1.21281 0.98675 0.92348 1.00449 1.20978 0.99667 1.03853 0.98405 1.21174 1.01213 0.97761 1.02108 1.22311 0.95561 1.03640 0.93141 1.41553 1.20642 1.21876 1.22699 1.17725 0.86681 0.98418 0.94303 1.21146 0.92038 1.00651 1.00050 1.21111 0.98095 0.96806 0.95303 1.19574 0.95543 0.97527 0.94026 1.20772 0.97760 0.89253 1.05956 1.21039 0.82424 0.89432 0.76964 1.90745 1.31515 1.79562 1.44249 1.45892 1.21401 1.06725 1.61968 1.22392 0.98706 0.79258 0.98043 0.88815 1.23385 0.96194 0.94917 1.01474 1.21314 0.95689 0.95933 0.95981 0.88105 1.19794 0.97740 0.93771 0.96336 1.21217 0.97626 1.00613 0.94690 1.21446 0.98231 0.95487 0.99446 1.21456 1.00528 0.94730 0.98925 1.21420 0.97567 1.00715 0.95189 1.21318 0.98875 0.95104 0.99709 1.23584 0.99597 0.96297 0.98519 1.21017 0.92314 0.97895 1.00523 1.20923 0.98967 0.98325 0.94649 0.76208 0.88211 1.20885 1.21544 0.83111 0.82785 0.80893 0.84599 0.83470 0.84602 0.85215 0.74421 0.90119 0.87907 0.84492 0.84585 0.85008 0.85056 0.85330 0.88371 0.92126 0.84649 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.18 10.90 -148.98 -1.62 -2.80 16 2 C -0.05 -0.14 2.50 71.23 0.18 0.04 16 3 Si 0.81 -0.63 30.97 68.60 2.12 1.49 16 4 C -0.02 -0.10 6.12 41.04 0.25 0.15 16 5 C -0.20 -1.08 9.39 22.15 0.21 -0.88 16 6 C -0.20 -1.06 10.86 22.15 0.24 -0.82 16 7 C -0.02 -0.11 11.20 83.18 0.93 0.82 16 8 N -0.39 -2.71 2.84 -333.42 -0.95 -3.65 16 9 C 0.12 0.76 4.68 38.08 0.18 0.94 16 10 C -0.12 -0.42 9.76 22.38 0.22 -0.20 16 11 C -0.09 -0.12 9.69 22.25 0.22 0.09 16 12 C -0.07 -0.08 4.38 -19.85 -0.09 -0.17 16 13 C -0.10 0.55 5.83 29.10 0.17 0.72 16 14 C 0.51 0.30 7.82 87.66 0.69 0.98 16 15 O -0.58 -6.58 15.63 -3.03 -0.05 -6.63 16 16 N -0.71 3.40 5.35 -440.04 -2.36 1.05 16 17 C 0.12 -0.26 4.24 45.52 0.19 -0.06 16 18 H 0.09 0.29 7.46 -2.39 -0.02 0.27 16 19 C -0.12 0.63 7.30 31.12 0.23 0.86 16 20 C -0.07 0.18 3.98 -11.01 -0.04 0.14 16 21 H 0.10 -0.25 8.09 -2.39 -0.02 -0.27 16 22 C -0.08 0.02 5.29 -19.87 -0.11 -0.09 16 23 C -0.12 0.17 8.60 22.27 0.19 0.36 16 24 C -0.13 0.07 10.05 22.27 0.22 0.30 16 25 C -0.14 -0.07 10.05 22.27 0.22 0.15 16 26 C -0.13 -0.13 10.05 22.27 0.22 0.09 16 27 C -0.13 -0.13 9.71 22.27 0.22 0.09 16 28 C -0.14 0.29 7.25 31.12 0.23 0.52 16 29 C -0.10 -0.39 9.69 22.25 0.22 -0.18 16 30 C -0.11 -0.76 8.51 22.39 0.19 -0.57 16 31 H 0.39 -1.69 8.60 -74.06 -0.64 -2.33 16 32 H 0.10 0.42 7.96 -2.38 -0.02 0.40 16 33 H -0.28 -1.10 6.85 99.48 0.68 -0.41 16 34 H -0.29 -1.40 7.11 99.48 0.71 -0.69 16 35 H 0.15 0.39 6.45 -2.91 -0.02 0.37 16 36 H 0.15 0.26 8.06 -2.91 -0.02 0.24 16 37 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 38 H 0.14 0.14 8.06 -2.91 -0.02 0.12 16 39 H 0.15 -0.49 8.06 -2.91 -0.02 -0.52 16 40 H 0.14 -1.54 8.08 -2.39 -0.02 -1.56 16 41 H 0.13 -1.32 8.08 -2.38 -0.02 -1.34 16 42 H 0.42 -4.84 8.73 -92.71 -0.81 -5.65 16 43 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H 0.10 -0.78 7.69 -2.39 -0.02 -0.80 16 45 H 0.14 -0.77 6.68 -2.91 -0.02 -0.79 16 46 H 0.14 -0.58 8.06 -2.91 -0.02 -0.60 16 47 H 0.13 -0.34 8.06 -2.91 -0.02 -0.37 16 48 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 49 H 0.13 -0.19 8.05 -2.91 -0.02 -0.22 16 50 H 0.10 -0.39 6.34 -2.39 -0.02 -0.40 16 51 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 52 H 0.14 0.11 8.06 -2.91 -0.02 0.09 16 53 H 0.11 0.88 8.06 -2.91 -0.02 0.86 16 Total: 0.00 -22.87 437.62 1.83 -21.05 By element: Atomic # 1 Polarization: -13.30 SS G_CDS: -0.50 Total: -13.80 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 5.17 Total: 3.29 kcal Atomic # 7 Polarization: 0.70 SS G_CDS: -3.30 Total: -2.61 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -1.67 Total: -9.43 kcal Atomic # 14 Polarization: -0.63 SS G_CDS: 2.12 Total: 1.49 kcal Total: -22.87 1.83 -21.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13287746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.637 kcal (2) G-P(sol) polarization free energy of solvation -22.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds