Wall clock time and date at job start Sun Mar 7 2021 08:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47075 * 2 1 4 4 C 1.50700 * 109.47279 * 119.99771 * 2 1 3 5 5 C 1.38361 * 120.34746 * 65.00489 * 4 2 1 6 6 C 1.40021 * 118.28541 * 180.23158 * 5 4 2 7 7 C 1.47847 * 120.55378 * 179.72193 * 6 5 4 8 8 O 1.21549 * 120.00054 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99755 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99812 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.84845 * 25.33802 * 10 9 7 12 12 C 1.53783 * 113.61247 * 156.53379 * 10 9 7 13 13 C 1.53781 * 87.08181 * 139.97912 * 12 10 9 14 14 H 1.09006 * 113.61172 * 89.11158 * 13 12 10 15 15 C 1.50693 * 113.61792 * 219.93378 * 13 12 10 16 16 C 1.38238 * 120.00187 * 59.72691 * 15 13 12 17 17 C 1.38234 * 120.00170 * 179.76729 * 16 15 13 18 18 C 1.38231 * 119.99954 * 0.48526 * 17 16 15 19 19 C 1.38240 * 120.00021 * 359.78966 * 18 17 16 20 20 C 1.38228 * 119.99810 * 359.95937 * 19 18 17 21 21 C 1.53781 * 113.61373 * 254.14005 * 10 9 7 22 22 C 1.39515 * 118.88754 * 359.52243 * 6 5 4 23 23 N 1.31704 * 120.56391 * 0.48851 * 22 6 5 24 24 C 1.31919 * 121.87700 * 359.73684 * 23 22 6 25 25 H 0.96696 * 114.00251 * 60.00528 * 1 2 3 26 26 H 1.08993 * 109.47616 * 239.99851 * 2 1 3 27 27 H 1.48500 * 109.99936 * 59.99989 * 3 2 1 28 28 H 1.48495 * 110.00262 * 181.31724 * 3 2 1 29 29 H 1.08002 * 120.85202 * 359.94964 * 5 4 2 30 30 H 0.96997 * 120.00032 * 0.02562 * 9 7 6 31 31 H 1.09001 * 113.61381 * 254.52905 * 12 10 9 32 32 H 1.09003 * 113.61449 * 25.43398 * 12 10 9 33 33 H 1.07998 * 119.99664 * 0.02562 * 16 15 13 34 34 H 1.07998 * 119.99818 * 180.25285 * 17 16 15 35 35 H 1.08004 * 119.99977 * 179.76645 * 18 17 16 36 36 H 1.08001 * 119.99544 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.99841 * 180.02562 * 20 19 18 38 38 H 1.09006 * 113.61648 * 334.56761 * 21 10 9 39 39 H 1.08997 * 113.61216 * 105.47128 * 21 10 9 40 40 H 1.07996 * 119.72124 * 180.20517 * 22 6 5 41 41 H 1.08005 * 119.45886 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6887 -2.0612 1.4059 6 6 2.1710 -2.6766 2.5674 7 6 1.9351 -4.1160 2.8087 8 8 1.3183 -4.7756 1.9951 9 7 2.4048 -4.6971 3.9304 10 6 2.1715 -6.1236 4.1693 11 1 2.0226 -6.6880 3.2488 12 6 3.1919 -6.7629 5.1258 13 6 2.0146 -7.5431 5.7343 14 1 1.8217 -8.4964 5.2423 15 6 2.0805 -7.6619 7.2351 16 6 2.0915 -6.5232 8.0188 17 6 2.1470 -6.6323 9.3958 18 6 2.2017 -7.8798 9.9886 19 6 2.1964 -9.0184 9.2047 20 6 2.1356 -8.9094 7.8280 21 6 1.1055 -6.4023 5.2421 22 6 2.8815 -1.9097 3.4912 23 7 3.0869 -0.6261 3.2791 24 6 2.6405 -0.0188 2.1965 25 1 -0.3933 0.4416 -0.7650 26 1 1.7924 -0.5138 -0.8899 27 1 1.5614 2.4679 1.2085 28 1 3.5345 1.7704 -0.0321 29 1 1.1376 -2.6253 0.6680 30 1 2.8973 -4.1708 4.5795 31 1 3.9230 -7.3968 4.6241 32 1 3.6482 -6.0529 5.8156 33 1 2.0525 -5.5484 7.5555 34 1 2.1515 -5.7427 10.0081 35 1 2.2489 -7.9649 11.0642 36 1 2.2395 -9.9931 9.6679 37 1 2.1310 -9.7990 7.2156 38 1 0.9904 -5.5934 5.9637 39 1 0.1548 -6.7454 4.8341 40 1 3.2625 -2.3713 4.3902 41 1 2.8317 1.0357 2.0619 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16147626_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:02 Heat of formation + Delta-G solvation = 27.679670 kcal Electronic energy + Delta-G solvation = -24159.545879 eV Core-core repulsion = 20585.760875 eV Total energy + Delta-G solvation = -3573.785004 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.00114 -41.25736 -40.05292 -38.68017 -37.92807 -34.99381 -33.88196 -33.15516 -31.87882 -31.56556 -27.35602 -26.85885 -26.80137 -25.12140 -23.78208 -23.62117 -22.45845 -21.58748 -20.46881 -18.97140 -18.64302 -18.40655 -18.08171 -17.69136 -16.93121 -16.47490 -16.23824 -16.14674 -15.84833 -15.38425 -15.36536 -15.14921 -14.76528 -14.39550 -14.33191 -14.25016 -14.17462 -14.01722 -13.81743 -13.59735 -13.17224 -12.66913 -12.61498 -12.38465 -12.17827 -11.89473 -11.76129 -11.54304 -11.28601 -11.05281 -10.73424 -10.51794 -10.29319 -10.12896 -9.84300 -9.58600 -5.12289 -0.61736 -0.04459 0.40146 0.47748 1.09840 1.51212 1.68432 1.80263 1.94830 2.57029 2.80343 2.94501 3.16530 3.34633 3.46793 3.54411 3.61587 3.63935 3.66453 3.72821 3.83002 3.96764 4.00439 4.07414 4.10299 4.15475 4.21669 4.36246 4.48114 4.55032 4.58193 4.63149 4.71301 4.79509 4.86127 4.87817 4.93191 5.03254 5.10042 5.14589 5.24623 5.42748 5.55175 5.61680 5.69207 6.07465 6.31023 6.47100 6.57553 7.04423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.070 4.070 3 Si 0.686 3.314 4 C -0.133 4.133 5 C 0.015 3.985 6 C -0.187 4.187 7 C 0.567 3.433 8 O -0.527 6.527 9 N -0.715 5.715 10 C 0.123 3.877 11 H 0.120 0.880 12 C -0.135 4.135 13 C -0.070 4.070 14 H 0.103 0.897 15 C -0.070 4.070 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.145 4.145 22 C 0.138 3.862 23 N -0.477 5.477 24 C 0.123 3.877 25 H 0.387 0.613 26 H 0.081 0.919 27 H -0.246 1.246 28 H -0.250 1.250 29 H 0.154 0.846 30 H 0.400 0.600 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.163 0.837 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 1.410 -1.161 2.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.181 4.181 3 Si 0.587 3.413 4 C -0.135 4.135 5 C -0.012 4.012 6 C -0.192 4.192 7 C 0.354 3.646 8 O -0.403 6.403 9 N -0.366 5.366 10 C 0.018 3.982 11 H 0.138 0.862 12 C -0.173 4.173 13 C -0.089 4.089 14 H 0.122 0.878 15 C -0.070 4.070 16 C -0.136 4.136 17 C -0.136 4.136 18 C -0.142 4.142 19 C -0.135 4.135 20 C -0.133 4.133 21 C -0.184 4.184 22 C -0.021 4.021 23 N -0.184 5.184 24 C -0.033 4.033 25 H 0.235 0.765 26 H 0.099 0.901 27 H -0.170 1.170 28 H -0.174 1.174 29 H 0.172 0.828 30 H 0.236 0.764 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.180 0.820 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.747 1.696 -0.149 2.439 hybrid contribution -0.183 -0.796 0.000 0.817 sum 1.564 0.900 -0.148 1.810 Atomic orbital electron populations 1.86492 1.16714 1.81966 1.49937 1.24605 0.86197 1.10711 0.96571 0.94882 0.80998 0.77699 0.87762 1.20414 1.00957 0.94729 0.97376 1.21626 0.91370 0.93140 0.95036 1.21055 1.04613 0.95277 0.98287 1.18000 0.78835 0.86249 0.81556 1.90813 1.40017 1.64336 1.45154 1.45891 1.57515 1.10832 1.22330 1.22614 0.96465 0.80587 0.98523 0.86246 1.23458 0.96712 0.99296 0.97865 1.21350 0.97052 0.98940 0.91546 0.87836 1.19623 0.99705 0.93272 0.94433 1.20985 1.00820 0.98102 0.93679 1.21171 0.99857 0.97723 0.94823 1.21207 1.00245 0.92682 1.00045 1.21197 0.99732 0.98739 0.93868 1.21086 1.00320 0.97019 0.94918 1.23655 0.98491 0.98130 0.98075 1.23027 0.92274 0.89404 0.97345 1.67707 1.19701 1.10617 1.20415 1.22724 0.92465 0.99558 0.88549 0.76522 0.90097 1.17015 1.17440 0.82817 0.76377 0.90058 0.89172 0.86211 0.86024 0.86054 0.85966 0.86004 0.89179 0.90350 0.82034 0.82858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.23 12.82 -35.23 -0.45 -0.23 16 2 C -0.07 0.06 2.81 36.01 0.10 0.16 16 3 Si 0.69 -1.46 29.88 -169.99 -5.08 -6.54 16 4 C -0.13 -0.24 5.39 -104.53 -0.56 -0.80 16 5 C 0.01 0.04 9.38 -38.87 -0.36 -0.33 16 6 C -0.19 -0.35 5.89 -104.82 -0.62 -0.96 16 7 C 0.57 1.36 7.78 -12.33 -0.10 1.27 16 8 O -0.53 -3.14 16.04 5.32 0.09 -3.06 16 9 N -0.71 0.48 5.32 -53.96 -0.29 0.19 16 10 C 0.12 -0.09 4.21 -67.12 -0.28 -0.37 16 11 H 0.12 0.08 7.50 -51.93 -0.39 -0.30 16 12 C -0.14 0.27 7.30 -25.92 -0.19 0.08 16 13 C -0.07 0.09 3.97 -90.87 -0.36 -0.27 16 14 H 0.10 -0.18 8.09 -51.93 -0.42 -0.60 16 15 C -0.07 -0.01 5.29 -104.63 -0.55 -0.56 16 16 C -0.12 -0.01 8.60 -39.58 -0.34 -0.35 16 17 C -0.12 -0.04 10.05 -39.59 -0.40 -0.44 16 18 C -0.12 -0.07 10.05 -39.58 -0.40 -0.46 16 19 C -0.12 -0.06 10.05 -39.58 -0.40 -0.46 16 20 C -0.12 -0.05 9.71 -39.59 -0.38 -0.44 16 21 C -0.14 0.12 7.27 -25.83 -0.19 -0.07 16 22 C 0.14 0.11 10.71 -17.13 -0.18 -0.07 16 23 N -0.48 -1.34 10.35 -12.91 -0.13 -1.48 16 24 C 0.12 0.29 9.84 -17.47 -0.17 0.12 16 25 H 0.39 -2.14 8.74 45.56 0.40 -1.74 16 26 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 27 H -0.25 -0.21 7.05 56.52 0.40 0.19 16 28 H -0.25 -0.05 7.11 56.52 0.40 0.35 16 29 H 0.15 0.37 7.74 -52.49 -0.41 -0.04 16 30 H 0.40 -1.32 6.78 -40.82 -0.28 -1.59 16 31 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 32 H 0.09 -0.23 7.68 -51.93 -0.40 -0.63 16 33 H 0.12 -0.18 6.69 -52.49 -0.35 -0.53 16 34 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 35 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 36 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 37 H 0.12 -0.12 8.05 -52.48 -0.42 -0.55 16 38 H 0.09 -0.09 6.35 -51.93 -0.33 -0.42 16 39 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 40 H 0.16 -0.45 6.42 -52.49 -0.34 -0.79 16 41 H 0.15 0.20 4.87 -52.48 -0.26 -0.05 16 LS Contribution 344.18 15.07 5.19 5.19 Total: 0.00 -8.90 344.18 -10.98 -19.88 By element: Atomic # 1 Polarization: -5.08 SS G_CDS: -4.92 Total: -10.00 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -5.39 Total: -3.97 kcal Atomic # 7 Polarization: -0.86 SS G_CDS: -0.42 Total: -1.28 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -0.37 Total: -3.28 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: -5.08 Total: -6.54 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -8.90 -10.98 -19.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.562 kcal (2) G-P(sol) polarization free energy of solvation -8.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds