Wall clock time and date at job start Sun Mar 7 2021 08:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36423 * 125.80322 * 2 1 4 4 C 1.47377 * 127.18543 * 359.97438 * 3 2 1 5 5 O 1.21605 * 120.00589 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99549 * 179.70900 * 4 3 2 7 7 C 1.46499 * 119.99971 * 179.97438 * 6 4 3 8 8 H 1.09006 * 112.84822 * 23.79911 * 7 6 4 9 9 C 1.53775 * 113.61462 * 154.99913 * 7 6 4 10 10 C 1.53780 * 87.08390 * 139.98289 * 9 7 6 11 11 H 1.09003 * 113.61528 * 89.11243 * 10 9 7 12 12 C 1.50697 * 113.61812 * 219.93944 * 10 9 7 13 13 C 1.38227 * 120.00317 * 59.71853 * 12 10 9 14 14 C 1.38235 * 120.00479 * 179.81566 * 13 12 10 15 15 C 1.38236 * 119.99364 * 0.39586 * 14 13 12 16 16 C 1.38235 * 120.00343 * 359.85714 * 15 14 13 17 17 C 1.38238 * 120.00035 * 359.95921 * 16 15 14 18 18 C 1.53784 * 113.61488 * 252.49901 * 7 6 4 19 19 C 1.47022 * 105.61803 * 179.73460 * 3 2 1 20 20 C 1.34175 * 105.95151 * 0.26166 * 19 3 2 21 21 C 1.50705 * 125.43496 * 179.97438 * 20 19 3 22 22 O 1.42905 * 109.47013 * 300.00168 * 21 20 19 23 23 Si 1.86297 * 109.47110 * 180.02562 * 21 20 19 24 24 O 1.33654 * 125.80362 * 180.18680 * 2 1 3 25 25 H 1.09006 * 109.46973 * 90.00072 * 1 2 3 26 26 H 1.08996 * 109.47287 * 209.99618 * 1 2 3 27 27 H 1.08996 * 109.47364 * 330.00202 * 1 2 3 28 28 H 0.96999 * 120.00044 * 359.97438 * 6 4 3 29 29 H 1.09005 * 113.61447 * 254.53082 * 9 7 6 30 30 H 1.08991 * 113.61578 * 25.43347 * 9 7 6 31 31 H 1.08004 * 119.99917 * 0.02562 * 13 12 10 32 32 H 1.08000 * 120.00576 * 180.23690 * 14 13 12 33 33 H 1.08003 * 119.99888 * 179.84023 * 15 14 13 34 34 H 1.07996 * 120.00126 * 179.97438 * 16 15 14 35 35 H 1.07989 * 120.00277 * 179.97438 * 17 16 15 36 36 H 1.08996 * 113.60949 * 334.56614 * 18 7 6 37 37 H 1.09001 * 113.61595 * 105.46866 * 18 7 6 38 38 H 1.07998 * 127.01964 * 180.27981 * 19 3 2 39 39 H 1.08997 * 109.46716 * 59.99936 * 21 20 19 40 40 H 0.96701 * 113.99668 * 299.99629 * 22 21 20 41 41 H 1.48503 * 110.00064 * 58.68004 * 23 21 20 42 42 H 1.48498 * 110.00091 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8739 2.5157 -0.0005 5 8 0.6890 2.7892 -0.0015 6 7 2.7930 3.5016 0.0055 7 6 2.3645 4.9025 0.0044 8 1 1.3595 5.0380 0.4043 9 6 3.4021 5.8645 0.6065 10 6 3.0309 6.8443 -0.5191 11 1 2.2079 7.5117 -0.2633 12 6 4.2153 7.5720 -1.1010 13 6 5.2462 6.8593 -1.6841 14 6 6.3308 7.5270 -2.2214 15 6 6.3884 8.9071 -2.1681 16 6 5.3599 9.6196 -1.5803 17 6 4.2735 8.9521 -1.0465 18 6 2.5969 5.6168 -1.3375 19 6 3.6849 0.5991 0.0066 20 6 3.5859 -0.7390 0.0039 21 6 4.7460 -1.7010 0.0080 22 8 5.5484 -1.4846 -1.1545 23 14 4.1028 -3.4494 0.0013 24 8 2.2888 -1.0840 -0.0035 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5138 28 1 3.7381 3.2835 0.0105 29 1 3.1392 6.2230 1.6018 30 1 4.4261 5.4964 0.5449 31 1 5.2026 5.7808 -1.7230 32 1 7.1345 6.9703 -2.6804 33 1 7.2370 9.4287 -2.5855 34 1 5.4051 10.6978 -1.5384 35 1 3.4702 9.5087 -0.5869 36 1 3.4009 5.1809 -1.9305 37 1 1.6841 5.7753 -1.9117 38 1 4.5928 1.1841 0.0126 39 1 5.3492 -1.5388 0.9012 40 1 5.0752 -1.6117 -1.9882 41 1 3.2528 -3.6733 -1.1957 42 1 5.2370 -4.4078 0.0047 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:03 Heat of formation + Delta-G solvation = 2.865626 kcal Electronic energy + Delta-G solvation = -25121.194267 eV Core-core repulsion = 21421.303105 eV Total energy + Delta-G solvation = -3699.891162 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.77225 -41.42731 -40.18540 -38.66884 -38.15770 -34.91029 -34.00214 -33.09667 -31.85764 -31.59841 -29.41898 -26.73172 -26.64862 -25.47418 -24.18730 -23.57383 -22.67038 -21.73339 -21.10719 -20.06468 -18.95343 -18.21361 -17.93927 -17.72531 -17.00003 -16.77980 -16.42451 -16.06845 -16.03508 -15.74136 -15.62044 -15.26634 -14.87451 -14.35041 -14.26956 -14.21437 -14.14001 -13.98564 -13.87526 -13.78327 -13.47430 -13.13622 -12.93999 -12.83369 -12.53621 -12.31706 -12.18272 -11.81980 -11.67497 -11.46452 -11.10966 -10.95306 -10.73857 -10.10564 -9.82192 -9.59512 -9.54191 -4.94078 0.21956 0.42692 0.49710 0.81600 1.17843 1.42042 1.69912 1.91356 2.16720 2.22620 2.83238 3.16342 3.38042 3.45046 3.65290 3.71984 3.74576 3.77691 3.93077 4.04611 4.10797 4.14166 4.18237 4.28893 4.39006 4.47166 4.54900 4.58694 4.61548 4.64404 4.69645 4.72292 4.79890 4.82906 4.96192 5.00375 5.09031 5.13543 5.17389 5.20896 5.24162 5.53286 5.58484 5.64086 5.73552 5.88439 6.12122 6.33113 6.48496 7.15028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.085 3.915 3 C -0.270 4.270 4 C 0.589 3.411 5 O -0.575 6.575 6 N -0.701 5.701 7 C 0.122 3.878 8 H 0.104 0.896 9 C -0.124 4.124 10 C -0.066 4.066 11 H 0.107 0.893 12 C -0.077 4.077 13 C -0.126 4.126 14 C -0.130 4.130 15 C -0.138 4.138 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.142 4.142 19 C -0.147 4.147 20 C -0.058 4.058 21 C -0.032 4.032 22 O -0.533 6.533 23 Si 0.770 3.230 24 O -0.172 6.172 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.412 0.588 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.177 0.823 39 H 0.158 0.842 40 H 0.390 0.610 41 H -0.295 1.295 42 H -0.282 1.282 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 -0.383 1.918 2.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.032 3.968 3 C -0.274 4.274 4 C 0.378 3.622 5 O -0.456 6.456 6 N -0.351 5.351 7 C 0.017 3.983 8 H 0.122 0.878 9 C -0.162 4.162 10 C -0.085 4.085 11 H 0.125 0.875 12 C -0.077 4.077 13 C -0.143 4.143 14 C -0.148 4.148 15 C -0.156 4.156 16 C -0.148 4.148 17 C -0.147 4.147 18 C -0.180 4.180 19 C -0.166 4.166 20 C -0.106 4.106 21 C -0.141 4.141 22 O -0.341 6.341 23 Si 0.674 3.326 24 O -0.069 6.069 25 H 0.113 0.887 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.249 0.751 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.194 0.806 39 H 0.175 0.825 40 H 0.240 0.760 41 H -0.222 1.222 42 H -0.209 1.209 Dipole moment (debyes) X Y Z Total from point charges 1.624 -1.117 1.946 2.770 hybrid contribution 0.642 0.714 -1.330 1.640 sum 2.266 -0.403 0.615 2.382 Atomic orbital electron populations 1.20708 0.82624 1.05739 1.05039 1.23233 0.94774 0.83014 0.95806 1.21237 0.94270 0.93515 1.18390 1.17414 0.85296 0.84481 0.74988 1.90749 1.17964 1.84551 1.52353 1.45691 1.09892 1.05364 1.74201 1.22527 0.99769 0.78646 0.97382 0.87847 1.23395 0.99485 0.94491 0.98785 1.21307 0.95851 0.94875 0.96482 0.87462 1.19800 0.95754 0.93667 0.98471 1.21197 0.93848 1.00533 0.98765 1.21430 0.98745 0.94873 0.99704 1.21454 0.99423 0.94764 0.99950 1.21437 0.94241 1.00857 0.98264 1.21329 0.98975 0.94181 1.00243 1.23591 1.02135 0.95444 0.96868 1.22781 0.96355 0.93643 1.03815 1.22843 0.82853 0.95947 1.08967 1.24489 0.89968 1.06945 0.92724 1.86641 1.39305 1.91701 1.16502 0.93518 0.78879 0.72236 0.87984 1.83678 1.16806 1.34997 1.71436 0.88668 0.88000 0.88395 0.75081 0.89726 0.88420 0.84968 0.84793 0.84968 0.84868 0.84991 0.88919 0.91479 0.80556 0.82481 0.76000 1.22226 1.20897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.03 9.89 71.23 0.70 0.67 16 2 C 0.09 0.30 7.37 25.26 0.19 0.49 16 3 C -0.27 -1.05 6.31 -18.99 -0.12 -1.17 16 4 C 0.59 3.58 7.81 86.65 0.68 4.25 16 5 O -0.57 -7.10 14.44 -4.05 -0.06 -7.16 16 6 N -0.70 -0.04 5.35 -443.34 -2.37 -2.42 16 7 C 0.12 -0.03 4.24 45.52 0.19 0.16 16 8 H 0.10 0.34 7.46 -2.38 -0.02 0.32 16 9 C -0.12 0.44 7.30 31.12 0.23 0.67 16 10 C -0.07 0.13 3.98 -11.01 -0.04 0.09 16 11 H 0.11 -0.31 8.09 -2.39 -0.02 -0.33 16 12 C -0.08 -0.05 5.29 -19.87 -0.11 -0.15 16 13 C -0.13 -0.03 8.60 22.27 0.19 0.16 16 14 C -0.13 -0.10 10.05 22.27 0.22 0.12 16 15 C -0.14 -0.17 10.05 22.27 0.22 0.05 16 16 C -0.13 -0.18 10.05 22.27 0.22 0.05 16 17 C -0.13 -0.16 9.71 22.27 0.22 0.06 16 18 C -0.14 0.11 7.26 31.12 0.23 0.34 16 19 C -0.15 0.04 10.46 23.65 0.25 0.29 16 20 C -0.06 0.02 6.20 24.76 0.15 0.17 16 21 C -0.03 0.11 2.98 71.24 0.21 0.32 16 22 O -0.53 0.73 12.86 -148.98 -1.92 -1.18 16 23 Si 0.77 -2.04 32.08 68.60 2.20 0.16 16 24 O -0.17 -0.36 8.89 4.42 0.04 -0.32 16 25 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 26 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H 0.10 0.35 6.49 -2.39 -0.02 0.33 16 28 H 0.41 -2.00 7.90 -92.71 -0.73 -2.73 16 29 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 30 H 0.10 -0.50 7.69 -2.39 -0.02 -0.51 16 31 H 0.13 -0.41 6.68 -2.91 -0.02 -0.43 16 32 H 0.13 -0.35 8.06 -2.91 -0.02 -0.38 16 33 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 34 H 0.13 -0.25 8.06 -2.91 -0.02 -0.28 16 35 H 0.13 -0.23 8.05 -2.92 -0.02 -0.26 16 36 H 0.09 -0.14 6.33 -2.39 -0.02 -0.16 16 37 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.18 -0.89 7.74 -2.91 -0.02 -0.91 16 39 H 0.16 -1.17 7.96 -2.39 -0.02 -1.19 16 40 H 0.39 -2.35 8.70 -74.06 -0.64 -2.99 16 41 H -0.30 -1.15 7.11 99.48 0.71 -0.44 16 42 H -0.28 -0.84 7.11 99.48 0.71 -0.14 16 Total: 0.00 -16.75 355.21 1.25 -15.50 By element: Atomic # 1 Polarization: -10.88 SS G_CDS: -0.28 Total: -11.16 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 3.64 Total: 6.57 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -2.37 Total: -2.42 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -1.94 Total: -8.66 kcal Atomic # 14 Polarization: -2.04 SS G_CDS: 2.20 Total: 0.16 kcal Total: -16.75 1.25 -15.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.366 kcal (2) G-P(sol) polarization free energy of solvation -16.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds