Wall clock time and date at job start Sun Mar 7 2021 08:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86297 * 109.47367 * 2 1 4 4 C 1.50697 * 109.47169 * 239.99320 * 2 1 3 5 5 C 1.33743 * 125.12277 * 299.97779 * 4 2 1 6 6 C 1.37798 * 115.08033 * 179.76428 * 5 4 2 7 7 C 1.34979 * 114.70106 * 0.43743 * 6 5 4 8 8 C 1.47569 * 125.27502 * 179.85542 * 7 6 5 9 9 C 1.39813 * 119.99595 * 179.71895 * 8 7 6 10 10 C 1.36563 * 120.00047 * 180.02562 * 9 8 7 11 11 C 1.39834 * 119.99810 * 359.97438 * 10 9 8 12 12 C 1.47554 * 120.00531 * 179.97438 * 11 10 9 13 13 O 1.21598 * 119.99653 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00487 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00122 * 179.97438 * 14 12 11 16 16 H 1.08993 * 112.90929 * 336.25213 * 15 14 12 17 17 C 1.53962 * 113.66387 * 107.55425 * 15 14 12 18 18 C 1.53782 * 87.11063 * 139.88885 * 17 15 14 19 19 H 1.08996 * 113.68722 * 89.19879 * 18 17 15 20 20 C 1.50703 * 113.61283 * 220.08867 * 18 17 15 21 21 C 1.38231 * 119.99840 * 37.22646 * 20 18 17 22 22 C 1.38243 * 119.99645 * 179.74529 * 21 20 18 23 23 C 1.38225 * 120.00052 * 0.54815 * 22 21 20 24 24 C 1.38245 * 120.00084 * 359.70462 * 23 22 21 25 25 C 1.38234 * 119.99735 * 217.49657 * 20 18 17 26 26 C 1.53781 * 87.08260 * 334.63747 * 18 17 15 27 27 C 1.39835 * 119.99585 * 0.25761 * 11 10 9 28 28 C 1.36560 * 119.99658 * 359.50620 * 27 11 10 29 29 S 1.75859 * 125.11539 * 119.97943 * 4 2 1 30 30 H 0.96707 * 113.99622 * 60.00550 * 1 2 3 31 31 H 1.08999 * 109.46679 * 119.99485 * 2 1 3 32 32 H 1.48500 * 110.00177 * 59.99657 * 3 2 1 33 33 H 1.48506 * 110.00090 * 181.31790 * 3 2 1 34 34 H 1.07997 * 122.45414 * 0.02739 * 5 4 2 35 35 H 1.07999 * 122.64716 * 180.27044 * 6 5 4 36 36 H 1.08003 * 120.00529 * 0.02562 * 9 8 7 37 37 H 1.07995 * 120.00403 * 180.02562 * 10 9 8 38 38 H 0.97002 * 120.00080 * 0.02562 * 14 12 11 39 39 H 1.08997 * 113.53543 * 25.33559 * 17 15 14 40 40 H 1.08994 * 113.66446 * 254.45762 * 17 15 14 41 41 H 1.08003 * 120.00202 * 359.97438 * 21 20 18 42 42 H 1.07997 * 119.99760 * 180.27521 * 22 21 20 43 43 H 1.08000 * 120.00513 * 179.72427 * 23 22 21 44 44 H 1.08000 * 120.00353 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00416 * 0.02562 * 25 20 18 46 46 H 1.09002 * 113.61445 * 139.98212 * 26 18 17 47 47 H 1.09002 * 113.61408 * 270.79943 * 26 18 17 48 48 H 1.08001 * 119.99838 * 179.74786 * 27 11 10 49 49 H 1.08004 * 119.99601 * 180.23309 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2303 5 6 1.6725 -1.9850 -1.5425 6 6 2.2338 -2.4230 -2.7223 7 6 2.9670 -1.4973 -3.3759 8 6 3.6716 -1.7153 -4.6541 9 6 4.3972 -0.6730 -5.2389 10 6 5.0488 -0.8745 -6.4220 11 6 4.9907 -2.1234 -7.0483 12 6 5.6942 -2.3411 -8.3269 13 8 6.3241 -1.4342 -8.8363 14 7 5.6378 -3.5446 -8.9308 15 6 6.3359 -3.7605 -10.2006 16 1 6.5047 -2.8370 -10.7543 17 6 7.5919 -4.6418 -10.0732 18 6 7.1706 -5.2983 -11.3986 19 1 7.5677 -4.7970 -12.2812 20 6 7.3830 -6.7900 -11.4276 21 6 7.1562 -7.5426 -10.2905 22 6 7.3460 -8.9116 -10.3186 23 6 7.7732 -9.5264 -11.4805 24 6 8.0050 -8.7731 -12.6162 25 6 7.8098 -7.4048 -12.5897 26 6 5.7295 -4.8878 -11.0530 27 6 4.2609 -3.1643 -6.4658 28 6 3.6134 -2.9641 -5.2803 29 16 2.9462 0.0114 -2.4719 30 1 -0.3933 0.4417 -0.7652 31 1 1.7922 -0.5138 0.8900 32 1 1.5615 2.4679 1.2084 33 1 3.5347 1.7702 -0.0321 34 1 1.0645 -2.6227 -0.9179 35 1 2.0999 -3.4285 -3.0931 36 1 4.4424 0.2915 -4.7550 37 1 5.6096 -0.0696 -6.8736 38 1 5.1344 -4.2677 -8.5251 39 1 7.5627 -5.3207 -9.2210 40 1 8.5261 -4.0842 -10.1397 41 1 6.8273 -7.0615 -9.3812 42 1 7.1645 -9.5002 -9.4315 43 1 7.9258 -10.5954 -11.5013 44 1 8.3393 -9.2533 -13.5240 45 1 7.9916 -6.8162 -13.4768 46 1 5.1602 -4.5288 -11.9105 47 1 5.1907 -5.6346 -10.4699 48 1 4.2127 -4.1277 -6.9516 49 1 3.0529 -3.7692 -4.8285 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16147626_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:07 Heat of formation + Delta-G solvation = 45.136593 kcal Electronic energy + Delta-G solvation = -30973.363776 eV Core-core repulsion = 26730.934119 eV Total energy + Delta-G solvation = -4242.429657 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.123 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.67224 -40.86737 -39.85897 -39.14051 -38.53529 -37.40853 -34.90250 -33.46992 -32.36382 -31.87862 -31.60667 -30.45046 -27.47744 -26.79675 -26.03930 -24.67243 -23.98255 -23.66115 -23.43276 -22.41857 -21.55748 -20.52219 -20.29985 -19.15641 -18.55171 -18.24819 -17.64318 -17.13075 -16.68065 -16.53785 -16.30393 -16.24936 -16.11883 -15.99335 -15.68992 -15.56439 -15.27419 -14.99637 -14.64542 -14.53055 -14.36955 -14.28807 -14.20011 -13.95174 -13.91130 -13.65555 -13.57194 -13.39444 -13.14495 -13.08218 -12.61288 -12.58927 -12.36693 -12.24936 -12.12956 -11.86392 -11.73070 -11.61837 -11.49884 -10.90336 -10.82621 -10.56725 -10.24086 -10.08309 -9.84178 -9.59421 -9.58075 -9.06600 -5.20936 -0.91570 0.22810 0.29600 0.34017 0.40608 0.47773 0.71278 1.17118 1.50458 1.57610 1.84734 1.98926 2.08465 2.79519 2.82966 3.29831 3.35770 3.40286 3.58563 3.59848 3.64531 3.66870 3.71207 3.76931 3.85959 3.97995 4.07559 4.11314 4.12789 4.21523 4.24844 4.29952 4.39626 4.47412 4.50347 4.55020 4.56564 4.60303 4.66613 4.73600 4.84184 4.89142 4.93987 4.95222 5.04137 5.05837 5.11158 5.16779 5.19166 5.23261 5.26554 5.41712 5.48680 5.55292 5.61699 5.68472 5.70248 6.07619 6.41116 6.43541 7.17618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.026 4.026 3 Si 0.651 3.349 4 C -0.219 4.219 5 C -0.103 4.103 6 C -0.120 4.120 7 C -0.147 4.147 8 C 0.013 3.987 9 C -0.120 4.120 10 C -0.049 4.049 11 C -0.137 4.137 12 C 0.560 3.440 13 O -0.533 6.533 14 N -0.716 5.716 15 C 0.122 3.878 16 H 0.119 0.881 17 C -0.145 4.145 18 C -0.071 4.071 19 H 0.103 0.897 20 C -0.070 4.070 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.135 4.135 27 C -0.078 4.078 28 C -0.110 4.110 29 S 0.133 5.867 30 H 0.381 0.619 31 H 0.124 0.876 32 H -0.232 1.232 33 H -0.237 1.237 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.400 0.600 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.130 0.870 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 -2.464 -0.888 3.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.140 4.140 3 Si 0.551 3.449 4 C -0.337 4.337 5 C -0.134 4.134 6 C -0.150 4.150 7 C -0.264 4.264 8 C 0.011 3.989 9 C -0.139 4.139 10 C -0.068 4.068 11 C -0.140 4.140 12 C 0.348 3.652 13 O -0.410 6.410 14 N -0.367 5.367 15 C 0.018 3.982 16 H 0.137 0.863 17 C -0.183 4.183 18 C -0.090 4.090 19 H 0.121 0.879 20 C -0.070 4.070 21 C -0.136 4.136 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.134 4.134 26 C -0.174 4.174 27 C -0.097 4.097 28 C -0.130 4.130 29 S 0.400 5.600 30 H 0.229 0.771 31 H 0.141 0.859 32 H -0.155 1.155 33 H -0.161 1.161 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.160 0.840 38 H 0.236 0.764 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.147 0.853 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.696 -0.033 -0.449 0.829 hybrid contribution -0.781 -2.564 0.537 2.733 sum -1.477 -2.597 0.088 2.989 Atomic orbital electron populations 1.86528 1.16562 1.81680 1.49189 1.24409 0.85208 1.09126 0.95207 0.95002 0.82285 0.77803 0.89831 1.25092 1.07090 0.99116 1.02374 1.20000 1.01153 0.94838 0.97365 1.20390 0.98611 1.00615 0.95393 1.23081 1.05857 0.98071 0.99437 1.18294 0.95303 0.94104 0.91231 1.20977 0.98003 0.98735 0.96151 1.20953 0.95964 0.96285 0.93556 1.20028 1.02041 0.95593 0.96340 1.18250 0.80166 0.82441 0.84327 1.90808 1.42342 1.42339 1.65539 1.45894 1.53570 1.13337 1.23924 1.22601 0.92570 0.98608 0.84460 0.86281 1.23652 0.98846 0.98582 0.97264 1.21328 0.96930 0.91659 0.99055 0.87860 1.19633 0.99034 0.94561 0.93733 1.20984 1.00842 0.93872 0.97894 1.21165 0.99454 0.94739 0.98224 1.21202 0.99700 1.00061 0.93254 1.21199 0.99756 0.94086 0.98487 1.21091 0.99720 0.94848 0.97718 1.23454 0.96284 0.97470 1.00146 1.20954 0.95418 0.98147 0.95189 1.20866 1.00299 0.96364 0.95430 1.84154 1.48932 1.12594 1.14341 0.77115 0.85894 1.15516 1.16126 0.83657 0.83758 0.85141 0.84046 0.76403 0.89238 0.90440 0.86208 0.86054 0.86073 0.85981 0.86009 0.90161 0.89281 0.85265 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.18 12.86 -35.23 -0.45 -0.28 16 2 C -0.03 0.02 2.96 36.00 0.11 0.12 16 3 Si 0.65 -0.69 30.96 -169.99 -5.26 -5.95 16 4 C -0.22 0.05 5.73 -35.89 -0.21 -0.16 16 5 C -0.10 0.02 10.00 -41.32 -0.41 -0.39 16 6 C -0.12 0.05 9.64 -40.90 -0.39 -0.34 16 7 C -0.15 -0.04 6.37 -36.93 -0.24 -0.27 16 8 C 0.01 0.00 5.88 -104.91 -0.62 -0.61 16 9 C -0.12 -0.05 9.54 -39.60 -0.38 -0.43 16 10 C -0.05 -0.06 9.53 -39.59 -0.38 -0.44 16 11 C -0.14 -0.12 5.88 -104.90 -0.62 -0.73 16 12 C 0.56 1.22 7.76 -12.46 -0.10 1.12 16 13 O -0.53 -3.16 15.93 5.28 0.08 -3.08 16 14 N -0.72 0.54 5.31 -53.96 -0.29 0.26 16 15 C 0.12 -0.08 4.25 -67.02 -0.28 -0.37 16 16 H 0.12 0.11 7.46 -51.93 -0.39 -0.28 16 17 C -0.14 0.13 7.26 -25.82 -0.19 -0.06 16 18 C -0.07 0.09 3.98 -90.96 -0.36 -0.27 16 19 H 0.10 -0.18 8.09 -51.93 -0.42 -0.60 16 20 C -0.07 0.00 5.29 -104.62 -0.55 -0.55 16 21 C -0.12 0.02 8.63 -39.58 -0.34 -0.32 16 22 C -0.12 -0.01 10.05 -39.58 -0.40 -0.41 16 23 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 24 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 25 C -0.12 -0.04 9.71 -39.58 -0.38 -0.42 16 26 C -0.14 0.27 7.29 -25.92 -0.19 0.08 16 27 C -0.08 0.11 9.48 -39.59 -0.38 -0.27 16 28 C -0.11 0.12 9.48 -39.60 -0.38 -0.25 16 29 S 0.13 -0.03 19.46 -107.50 -2.09 -2.13 16 30 H 0.38 -1.53 8.70 45.56 0.40 -1.13 16 31 H 0.12 -0.07 7.96 -51.93 -0.41 -0.48 16 32 H -0.23 -0.36 7.11 56.52 0.40 0.04 16 33 H -0.24 -0.27 7.11 56.52 0.40 0.14 16 34 H 0.15 -0.14 8.06 -52.49 -0.42 -0.56 16 35 H 0.14 -0.34 6.88 -52.49 -0.36 -0.70 16 36 H 0.13 -0.10 7.26 -52.48 -0.38 -0.48 16 37 H 0.14 0.18 7.64 -52.49 -0.40 -0.22 16 38 H 0.40 -1.36 6.74 -40.82 -0.27 -1.63 16 39 H 0.09 -0.11 6.30 -51.93 -0.33 -0.44 16 40 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 41 H 0.12 -0.22 6.64 -52.48 -0.35 -0.57 16 42 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 43 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 44 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 45 H 0.12 -0.13 8.05 -52.49 -0.42 -0.56 16 46 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 47 H 0.09 -0.23 7.71 -51.93 -0.40 -0.63 16 48 H 0.13 -0.55 6.38 -52.49 -0.34 -0.89 16 49 H 0.13 -0.42 6.74 -52.48 -0.35 -0.77 16 LS Contribution 418.59 15.07 6.31 6.31 Total: 0.00 -7.90 418.59 -15.34 -23.24 By element: Atomic # 1 Polarization: -6.37 SS G_CDS: -6.16 Total: -12.53 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -7.47 Total: -5.85 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -0.29 Total: 0.26 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: -0.37 Total: -3.35 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: -5.26 Total: -5.95 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.09 Total: -2.13 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -7.90 -15.34 -23.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.378 kcal (2) G-P(sol) polarization free energy of solvation -7.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds