Wall clock time and date at job start Sun Mar 7 2021 08:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86297 * 109.47367 * 2 1 4 4 C 1.50697 * 109.47169 * 239.99320 * 2 1 3 5 5 C 1.33743 * 125.12277 * 299.97779 * 4 2 1 6 6 C 1.37798 * 115.08033 * 179.76428 * 5 4 2 7 7 C 1.34979 * 114.70106 * 0.43743 * 6 5 4 8 8 C 1.47569 * 125.27502 * 179.85542 * 7 6 5 9 9 C 1.39813 * 119.99595 * 179.71895 * 8 7 6 10 10 C 1.36563 * 120.00047 * 180.02562 * 9 8 7 11 11 C 1.39834 * 119.99810 * 359.97438 * 10 9 8 12 12 C 1.47554 * 120.00531 * 179.97438 * 11 10 9 13 13 O 1.21598 * 119.99653 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00487 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00122 * 179.97438 * 14 12 11 16 16 H 1.08993 * 112.90929 * 336.25213 * 15 14 12 17 17 C 1.53962 * 113.66387 * 107.55425 * 15 14 12 18 18 C 1.53782 * 87.11063 * 139.88885 * 17 15 14 19 19 H 1.08996 * 113.68722 * 89.19879 * 18 17 15 20 20 C 1.50703 * 113.61283 * 220.08867 * 18 17 15 21 21 C 1.38231 * 119.99840 * 37.22646 * 20 18 17 22 22 C 1.38243 * 119.99645 * 179.74529 * 21 20 18 23 23 C 1.38225 * 120.00052 * 0.54815 * 22 21 20 24 24 C 1.38245 * 120.00084 * 359.70462 * 23 22 21 25 25 C 1.38234 * 119.99735 * 217.49657 * 20 18 17 26 26 C 1.53781 * 87.08260 * 334.63747 * 18 17 15 27 27 C 1.39835 * 119.99585 * 0.25761 * 11 10 9 28 28 C 1.36560 * 119.99658 * 359.50620 * 27 11 10 29 29 S 1.75859 * 125.11539 * 119.97943 * 4 2 1 30 30 H 0.96707 * 113.99622 * 60.00550 * 1 2 3 31 31 H 1.08999 * 109.46679 * 119.99485 * 2 1 3 32 32 H 1.48500 * 110.00177 * 59.99657 * 3 2 1 33 33 H 1.48506 * 110.00090 * 181.31790 * 3 2 1 34 34 H 1.07997 * 122.45414 * 0.02739 * 5 4 2 35 35 H 1.07999 * 122.64716 * 180.27044 * 6 5 4 36 36 H 1.08003 * 120.00529 * 0.02562 * 9 8 7 37 37 H 1.07995 * 120.00403 * 180.02562 * 10 9 8 38 38 H 0.97002 * 120.00080 * 0.02562 * 14 12 11 39 39 H 1.08997 * 113.53543 * 25.33559 * 17 15 14 40 40 H 1.08994 * 113.66446 * 254.45762 * 17 15 14 41 41 H 1.08003 * 120.00202 * 359.97438 * 21 20 18 42 42 H 1.07997 * 119.99760 * 180.27521 * 22 21 20 43 43 H 1.08000 * 120.00513 * 179.72427 * 23 22 21 44 44 H 1.08000 * 120.00353 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00416 * 0.02562 * 25 20 18 46 46 H 1.09002 * 113.61445 * 139.98212 * 26 18 17 47 47 H 1.09002 * 113.61408 * 270.79943 * 26 18 17 48 48 H 1.08001 * 119.99838 * 179.74786 * 27 11 10 49 49 H 1.08004 * 119.99601 * 180.23309 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2303 5 6 1.6725 -1.9850 -1.5425 6 6 2.2338 -2.4230 -2.7223 7 6 2.9670 -1.4973 -3.3759 8 6 3.6716 -1.7153 -4.6541 9 6 4.3972 -0.6730 -5.2389 10 6 5.0488 -0.8745 -6.4220 11 6 4.9907 -2.1234 -7.0483 12 6 5.6942 -2.3411 -8.3269 13 8 6.3241 -1.4342 -8.8363 14 7 5.6378 -3.5446 -8.9308 15 6 6.3359 -3.7605 -10.2006 16 1 6.5047 -2.8370 -10.7543 17 6 7.5919 -4.6418 -10.0732 18 6 7.1706 -5.2983 -11.3986 19 1 7.5677 -4.7970 -12.2812 20 6 7.3830 -6.7900 -11.4276 21 6 7.1562 -7.5426 -10.2905 22 6 7.3460 -8.9116 -10.3186 23 6 7.7732 -9.5264 -11.4805 24 6 8.0050 -8.7731 -12.6162 25 6 7.8098 -7.4048 -12.5897 26 6 5.7295 -4.8878 -11.0530 27 6 4.2609 -3.1643 -6.4658 28 6 3.6134 -2.9641 -5.2803 29 16 2.9462 0.0114 -2.4719 30 1 -0.3933 0.4417 -0.7652 31 1 1.7922 -0.5138 0.8900 32 1 1.5615 2.4679 1.2084 33 1 3.5347 1.7702 -0.0321 34 1 1.0645 -2.6227 -0.9179 35 1 2.0999 -3.4285 -3.0931 36 1 4.4424 0.2915 -4.7550 37 1 5.6096 -0.0696 -6.8736 38 1 5.1344 -4.2677 -8.5251 39 1 7.5627 -5.3207 -9.2210 40 1 8.5261 -4.0842 -10.1397 41 1 6.8273 -7.0615 -9.3812 42 1 7.1645 -9.5002 -9.4315 43 1 7.9258 -10.5954 -11.5013 44 1 8.3393 -9.2533 -13.5240 45 1 7.9916 -6.8162 -13.4768 46 1 5.1602 -4.5288 -11.9105 47 1 5.1907 -5.6346 -10.4699 48 1 4.2127 -4.1277 -6.9516 49 1 3.0529 -3.7692 -4.8285 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:06 Heat of formation + Delta-G solvation = 52.304250 kcal Electronic energy + Delta-G solvation = -30973.052963 eV Core-core repulsion = 26730.934119 eV Total energy + Delta-G solvation = -4242.118845 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.123 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.68438 -40.82382 -39.85763 -39.08335 -38.55091 -37.35638 -34.97786 -33.43246 -32.31037 -31.81876 -31.55789 -30.40735 -27.45231 -26.70095 -25.99521 -24.62383 -23.93682 -23.60158 -23.38629 -22.37408 -21.61420 -20.45479 -20.24378 -19.10452 -18.54563 -18.20660 -17.59267 -17.13629 -16.61762 -16.49762 -16.25287 -16.20614 -16.11263 -16.03885 -15.65130 -15.53436 -15.25937 -14.99573 -14.56656 -14.48358 -14.36133 -14.25257 -14.15802 -13.89393 -13.89296 -13.60861 -13.45065 -13.34879 -13.10298 -13.07584 -12.59608 -12.53690 -12.29603 -12.28711 -12.06422 -11.80801 -11.66005 -11.57263 -11.45833 -11.04066 -10.81085 -10.53628 -10.18613 -10.11251 -9.79868 -9.55126 -9.53574 -9.02897 -5.16326 -0.88827 0.25354 0.34324 0.38486 0.44867 0.52014 0.76447 1.21876 1.52255 1.58943 1.84700 1.95964 2.07846 2.82363 2.85967 3.39292 3.44260 3.46681 3.65185 3.68599 3.72407 3.74382 3.76948 3.85105 3.94129 4.06488 4.15754 4.19392 4.20752 4.30690 4.32552 4.36942 4.46848 4.54851 4.57129 4.62062 4.63974 4.70779 4.74352 4.84006 4.92303 4.97331 5.01893 5.02240 5.09950 5.12115 5.18314 5.21901 5.23535 5.29378 5.32632 5.48498 5.52334 5.60611 5.66400 5.73572 5.75796 6.14326 6.46175 6.66154 7.12510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.024 4.024 3 Si 0.716 3.284 4 C -0.221 4.221 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.159 4.159 8 C 0.006 3.994 9 C -0.129 4.129 10 C -0.064 4.064 11 C -0.151 4.151 12 C 0.557 3.443 13 O -0.582 6.582 14 N -0.700 5.700 15 C 0.118 3.882 16 H 0.099 0.901 17 C -0.142 4.142 18 C -0.068 4.068 19 H 0.104 0.896 20 C -0.076 4.076 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.138 4.138 24 C -0.131 4.131 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.067 4.067 28 C -0.109 4.109 29 S 0.121 5.879 30 H 0.397 0.603 31 H 0.123 0.877 32 H -0.269 1.269 33 H -0.268 1.268 34 H 0.154 0.846 35 H 0.167 0.833 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.415 0.585 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.083 0.917 47 H 0.103 0.897 48 H 0.163 0.837 49 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 -4.492 -0.554 5.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.138 4.138 3 Si 0.620 3.380 4 C -0.339 4.339 5 C -0.140 4.140 6 C -0.147 4.147 7 C -0.276 4.276 8 C 0.004 3.996 9 C -0.147 4.147 10 C -0.083 4.083 11 C -0.154 4.154 12 C 0.346 3.654 13 O -0.463 6.463 14 N -0.351 5.351 15 C 0.013 3.987 16 H 0.117 0.883 17 C -0.180 4.180 18 C -0.087 4.087 19 H 0.122 0.878 20 C -0.076 4.076 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.156 4.156 24 C -0.149 4.149 25 C -0.149 4.149 26 C -0.160 4.160 27 C -0.086 4.086 28 C -0.128 4.128 29 S 0.389 5.611 30 H 0.247 0.753 31 H 0.140 0.860 32 H -0.194 1.194 33 H -0.194 1.194 34 H 0.171 0.829 35 H 0.184 0.816 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.254 0.746 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.148 0.852 46 H 0.102 0.898 47 H 0.121 0.879 48 H 0.180 0.820 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.020 -2.100 -0.136 2.917 hybrid contribution -0.374 -1.941 0.471 2.032 sum -2.394 -4.041 0.335 4.709 Atomic orbital electron populations 1.86493 1.16519 1.82054 1.50400 1.24396 0.85296 1.09009 0.95093 0.94186 0.79507 0.76445 0.87875 1.25163 1.07041 0.99354 1.02341 1.20185 1.01265 0.94879 0.97672 1.20637 0.97677 1.01406 0.94948 1.23168 1.06543 0.98220 0.99683 1.18462 0.95134 0.94644 0.91345 1.21029 0.98342 0.99333 0.96030 1.20949 0.96624 0.96572 0.94182 1.20039 1.03049 0.96249 0.96098 1.18526 0.79652 0.82577 0.84639 1.90781 1.44634 1.43997 1.66874 1.45781 1.52881 1.12886 1.23551 1.22557 0.93283 0.98251 0.84570 0.88299 1.23633 0.98060 0.98442 0.97879 1.21302 0.97477 0.91060 0.98850 0.87769 1.19784 0.98990 0.95024 0.93827 1.21221 1.00611 0.93935 0.98425 1.21437 0.99284 0.95176 0.98703 1.21453 0.99889 1.00813 0.93476 1.21424 1.00007 0.94351 0.99106 1.21319 1.00049 0.95152 0.98381 1.23398 0.95891 0.96754 0.99948 1.21259 0.93797 0.98653 0.94875 1.21195 0.99990 0.96395 0.95244 1.84197 1.49180 1.13099 1.14658 0.75324 0.86015 1.19393 1.19419 0.82857 0.81581 0.84846 0.85363 0.74577 0.88409 0.91709 0.84547 0.84617 0.85040 0.85058 0.85229 0.89849 0.87897 0.81972 0.82181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.69 12.86 -148.98 -1.92 -1.23 16 2 C -0.02 0.04 2.96 71.23 0.21 0.25 16 3 Si 0.72 -1.02 30.96 68.60 2.12 1.10 16 4 C -0.22 0.19 5.73 24.66 0.14 0.33 16 5 C -0.11 0.17 10.00 21.14 0.21 0.38 16 6 C -0.12 0.29 9.64 21.42 0.21 0.50 16 7 C -0.16 0.04 6.37 23.98 0.15 0.19 16 8 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 9 C -0.13 -0.23 9.54 22.26 0.21 -0.01 16 10 C -0.06 -0.25 9.53 22.26 0.21 -0.04 16 11 C -0.15 -0.30 5.88 -20.05 -0.12 -0.42 16 12 C 0.56 2.89 7.76 86.70 0.67 3.56 16 13 O -0.58 -8.25 15.93 -4.02 -0.06 -8.32 16 14 N -0.70 1.38 5.31 -442.88 -2.35 -0.97 16 15 C 0.12 -0.14 4.25 45.58 0.19 0.05 16 16 H 0.10 0.34 7.46 -2.39 -0.02 0.32 16 17 C -0.14 0.25 7.26 31.18 0.23 0.48 16 18 C -0.07 0.19 3.98 -11.01 -0.04 0.15 16 19 H 0.10 -0.32 8.09 -2.39 -0.02 -0.34 16 20 C -0.08 0.04 5.29 -19.87 -0.11 -0.07 16 21 C -0.12 0.18 8.63 22.27 0.19 0.37 16 22 C -0.13 0.09 10.05 22.27 0.22 0.31 16 23 C -0.14 -0.05 10.05 22.27 0.22 0.18 16 24 C -0.13 -0.10 10.05 22.27 0.22 0.12 16 25 C -0.13 -0.09 9.71 22.27 0.22 0.13 16 26 C -0.12 0.60 7.29 31.12 0.23 0.83 16 27 C -0.07 0.30 9.48 22.26 0.21 0.51 16 28 C -0.11 0.45 9.48 22.26 0.21 0.66 16 29 S 0.12 -0.04 19.46 -56.49 -1.10 -1.14 16 30 H 0.40 -3.48 8.70 -74.05 -0.64 -4.13 16 31 H 0.12 -0.15 7.96 -2.39 -0.02 -0.17 16 32 H -0.27 -1.20 7.11 99.48 0.71 -0.49 16 33 H -0.27 -0.95 7.11 99.48 0.71 -0.24 16 34 H 0.15 -0.51 8.06 -2.91 -0.02 -0.54 16 35 H 0.17 -1.26 6.88 -2.91 -0.02 -1.28 16 36 H 0.13 0.00 7.26 -2.91 -0.02 -0.02 16 37 H 0.13 0.73 7.64 -2.91 -0.02 0.70 16 38 H 0.42 -3.63 6.74 -92.71 -0.62 -4.26 16 39 H 0.10 -0.34 6.30 -2.39 -0.02 -0.36 16 40 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.14 -0.76 6.64 -2.91 -0.02 -0.78 16 42 H 0.14 -0.59 8.06 -2.91 -0.02 -0.62 16 43 H 0.13 -0.36 8.06 -2.91 -0.02 -0.38 16 44 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 45 H 0.13 -0.25 8.05 -2.91 -0.02 -0.27 16 46 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 47 H 0.10 -0.76 7.71 -2.39 -0.02 -0.78 16 48 H 0.16 -1.93 6.38 -2.91 -0.02 -1.95 16 49 H 0.16 -1.56 6.74 -2.91 -0.02 -1.58 16 Total: 0.00 -20.31 418.59 0.26 -20.06 By element: Atomic # 1 Polarization: -17.64 SS G_CDS: -0.22 Total: -17.86 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 3.78 Total: 8.35 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -2.35 Total: -0.97 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -1.98 Total: -9.54 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: 2.12 Total: 1.10 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.10 Total: -1.14 kcal Total: -20.31 0.26 -20.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.362 kcal (2) G-P(sol) polarization free energy of solvation -20.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds