Wall clock time and date at job start Sun Mar 7 2021 08:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86293 * 109.47366 * 2 1 4 4 C 1.50708 * 109.46710 * 119.99967 * 2 1 3 5 5 C 1.38052 * 119.80620 * 65.02075 * 4 2 1 6 6 C 1.38711 * 120.08433 * 179.72407 * 5 4 2 7 7 O 1.35647 * 120.15349 * 180.28040 * 6 5 4 8 8 C 1.40140 * 119.69866 * 0.48110 * 6 5 4 9 9 C 1.47530 * 120.19350 * 179.79491 * 8 6 5 10 10 O 1.21598 * 119.99732 * 359.72151 * 9 8 6 11 11 N 1.34773 * 120.00409 * 179.72485 * 9 8 6 12 12 C 1.46501 * 120.00122 * 179.97438 * 11 9 8 13 13 H 1.08993 * 112.90929 * 336.25213 * 12 11 9 14 14 C 1.53962 * 113.66387 * 107.55425 * 12 11 9 15 15 C 1.53782 * 87.11063 * 139.88885 * 14 12 11 16 16 H 1.08997 * 113.61225 * 89.18406 * 15 14 12 17 17 C 1.50703 * 113.61283 * 220.08867 * 15 14 12 18 18 C 1.38231 * 119.99840 * 37.22646 * 17 15 14 19 19 C 1.38241 * 119.99604 * 179.78966 * 18 17 15 20 20 C 1.38230 * 120.00230 * 0.43927 * 19 18 17 21 21 C 1.38244 * 119.99595 * 359.81297 * 20 19 18 22 22 C 1.38226 * 119.99958 * 359.97438 * 21 20 19 23 23 C 1.53781 * 87.08260 * 334.63747 * 15 14 12 24 24 C 1.39715 * 119.61571 * 359.52190 * 8 6 5 25 25 C 1.37782 * 119.90589 * 0.24726 * 24 8 6 26 26 H 0.96703 * 114.00440 * 300.00629 * 1 2 3 27 27 H 1.08995 * 109.47384 * 239.99461 * 2 1 3 28 28 H 1.48495 * 110.00260 * 299.99767 * 3 2 1 29 29 H 1.48506 * 110.00183 * 61.31517 * 3 2 1 30 30 H 1.07993 * 119.95786 * 359.95350 * 5 4 2 31 31 H 0.96698 * 114.00095 * 270.20526 * 7 6 5 32 32 H 0.97002 * 120.00080 * 0.02562 * 11 9 8 33 33 H 1.08997 * 113.53543 * 25.33559 * 14 12 11 34 34 H 1.08998 * 113.73879 * 254.47157 * 14 12 11 35 35 H 1.08003 * 120.00202 * 359.97438 * 18 17 15 36 36 H 1.07997 * 119.99700 * 180.27521 * 19 18 17 37 37 H 1.07994 * 120.00270 * 179.83471 * 20 19 18 38 38 H 1.07999 * 119.99487 * 180.02562 * 21 20 19 39 39 H 1.08005 * 119.99884 * 179.97438 * 22 21 20 40 40 H 1.09002 * 113.61445 * 139.98212 * 23 15 14 41 41 H 1.09002 * 113.61408 * 270.79943 * 23 15 14 42 42 H 1.07996 * 120.04298 * 180.26978 * 24 8 6 43 43 H 1.08003 * 119.84899 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 1.2306 5 6 1.6830 -2.0586 1.3940 6 6 2.1475 -2.7195 2.5216 7 8 1.9093 -4.0454 2.6808 8 6 2.8604 -2.0103 3.4976 9 6 3.3556 -2.7013 4.7033 10 8 3.1411 -3.8886 4.8548 11 7 4.0456 -2.0168 5.6370 12 6 4.5368 -2.7029 6.8345 13 1 3.9683 -3.6022 7.0715 14 6 6.0614 -2.9170 6.8425 15 6 6.0251 -2.5627 8.3385 16 1 5.8643 -3.4236 8.9873 17 6 7.1786 -1.7006 8.7828 18 6 7.6649 -0.7125 7.9473 19 6 8.7202 0.0811 8.3566 20 6 9.2949 -0.1192 9.5977 21 6 8.8119 -1.1108 10.4311 22 6 7.7539 -1.9015 10.0235 23 6 4.7425 -1.7690 8.0389 24 6 3.1045 -0.6462 3.3195 25 6 2.6398 -0.0068 2.1910 26 1 -0.3934 0.4418 0.7650 27 1 1.7923 -0.5139 -0.8899 28 1 1.5616 2.4678 -1.2085 29 1 1.5879 2.4586 1.2242 30 1 1.1296 -2.6002 0.6411 31 1 1.0840 -4.2438 3.1441 32 1 4.2164 -1.0695 5.5164 33 1 6.6057 -2.1936 6.2354 34 1 6.3610 -3.9462 6.6446 35 1 7.2185 -0.5587 6.9759 36 1 9.0972 0.8560 7.7057 37 1 10.1210 0.4990 9.9164 38 1 9.2607 -1.2671 11.4009 39 1 7.3767 -2.6765 10.6744 40 1 3.9760 -1.8717 8.8070 41 1 4.9262 -0.7313 7.7604 42 1 3.6570 -0.0939 4.0652 43 1 2.8287 1.0478 2.0544 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:09 Heat of formation + Delta-G solvation = -23.854405 kcal Electronic energy + Delta-G solvation = -26380.161655 eV Core-core repulsion = 22550.885685 eV Total energy + Delta-G solvation = -3829.275970 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80372 -41.02893 -39.86538 -38.75507 -38.29852 -37.22695 -34.83722 -32.80840 -31.79626 -31.45123 -31.10391 -27.71864 -26.69067 -25.87173 -23.90895 -23.71139 -23.45626 -22.31129 -21.55700 -20.47572 -19.37187 -18.63719 -18.33830 -18.12626 -17.23015 -16.82380 -16.51135 -16.29683 -16.24710 -16.05226 -15.84305 -15.62971 -15.33830 -15.18089 -14.85733 -14.49626 -14.25844 -14.15107 -13.88472 -13.74661 -13.43808 -13.27666 -13.07809 -12.95102 -12.52278 -12.38116 -12.29629 -12.12841 -11.78938 -11.64528 -11.57129 -11.44163 -10.91259 -10.62458 -10.22134 -9.98925 -9.79077 -9.77711 -9.52312 -4.89152 -0.41477 0.15151 0.45755 0.53097 1.28511 1.61500 1.70437 1.99499 2.07990 2.57087 2.86485 3.11038 3.40800 3.44620 3.50376 3.66899 3.70917 3.75150 3.79063 3.94986 4.06611 4.09436 4.16997 4.20896 4.27728 4.32143 4.42098 4.56834 4.63768 4.64988 4.71572 4.75221 4.76524 4.84920 4.98373 5.02980 5.03467 5.11478 5.15156 5.19911 5.24186 5.24614 5.54218 5.60344 5.61660 5.67432 5.76511 6.15385 6.46697 6.49179 6.70428 7.17552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.094 4.094 3 Si 0.779 3.221 4 C -0.070 4.070 5 C -0.140 4.140 6 C 0.151 3.849 7 O -0.498 6.498 8 C -0.179 4.179 9 C 0.555 3.445 10 O -0.566 6.566 11 N -0.701 5.701 12 C 0.120 3.880 13 H 0.097 0.903 14 C -0.142 4.142 15 C -0.068 4.068 16 H 0.103 0.897 17 C -0.077 4.077 18 C -0.124 4.124 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.132 4.132 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.053 4.053 25 C -0.132 4.132 26 H 0.388 0.612 27 H 0.124 0.876 28 H -0.308 1.308 29 H -0.268 1.268 30 H 0.134 0.866 31 H 0.406 0.594 32 H 0.415 0.585 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.169 0.831 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 6.971 1.984 7.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.202 4.202 3 Si 0.683 3.317 4 C -0.071 4.071 5 C -0.158 4.158 6 C 0.105 3.895 7 O -0.311 6.311 8 C -0.183 4.183 9 C 0.344 3.656 10 O -0.445 6.445 11 N -0.353 5.353 12 C 0.016 3.984 13 H 0.115 0.885 14 C -0.181 4.181 15 C -0.087 4.087 16 H 0.121 0.879 17 C -0.077 4.077 18 C -0.141 4.141 19 C -0.146 4.146 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.149 4.149 23 C -0.159 4.159 24 C -0.071 4.071 25 C -0.150 4.150 26 H 0.238 0.762 27 H 0.142 0.858 28 H -0.236 1.236 29 H -0.194 1.194 30 H 0.151 0.849 31 H 0.266 0.734 32 H 0.253 0.747 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.186 0.814 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.667 6.555 1.286 7.193 hybrid contribution -1.515 -0.328 0.644 1.678 sum 1.153 6.228 1.930 6.621 Atomic orbital electron populations 1.86607 1.18239 1.80499 1.50266 1.25467 0.83715 1.12779 0.98239 0.93904 0.89997 0.70906 0.76877 1.20483 0.96523 0.93484 0.96579 1.21346 1.01563 0.94694 0.98239 1.18776 0.94867 0.83251 0.92624 1.84716 1.47071 1.19081 1.80260 1.20469 1.06335 0.95595 0.95888 1.18373 0.77815 0.86287 0.83156 1.90810 1.58651 1.16600 1.78456 1.45768 1.55494 1.13661 1.20417 1.22513 0.94355 0.97124 0.84457 0.88455 1.23638 0.96054 1.02554 0.95831 1.21291 0.92933 0.97993 0.96439 0.87913 1.19789 0.96849 0.96662 0.94394 1.21232 0.97195 0.95550 1.00168 1.21449 0.96553 0.99890 0.96665 1.21458 1.00674 0.98601 0.94921 1.21419 0.97037 0.96033 1.00458 1.21310 0.96870 1.00233 0.96528 1.23395 0.96682 0.99357 0.96488 1.21491 0.96405 0.91306 0.97903 1.21275 0.98792 1.01312 0.93592 0.76228 0.85805 1.23620 1.19355 0.84856 0.73405 0.74655 0.88334 0.91921 0.84411 0.84489 0.85029 0.85110 0.85318 0.89921 0.87807 0.81384 0.82041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.14 12.83 -148.98 -1.91 -2.05 16 2 C -0.09 0.31 2.79 71.24 0.20 0.51 16 3 Si 0.78 -4.66 29.86 68.60 2.05 -2.61 16 4 C -0.07 0.18 5.35 -19.83 -0.11 0.07 16 5 C -0.14 -0.25 9.60 22.34 0.21 -0.03 16 6 C 0.15 0.72 6.72 22.84 0.15 0.88 16 7 O -0.50 -4.00 11.58 -68.69 -0.80 -4.79 16 8 C -0.18 -0.32 5.89 -20.01 -0.12 -0.44 16 9 C 0.56 2.82 7.76 86.69 0.67 3.50 16 10 O -0.57 -7.93 14.76 16.90 0.25 -7.68 16 11 N -0.70 1.68 5.31 -442.91 -2.35 -0.68 16 12 C 0.12 -0.17 4.25 45.58 0.19 0.03 16 13 H 0.10 0.33 7.46 -2.39 -0.02 0.31 16 14 C -0.14 0.25 7.26 31.18 0.23 0.48 16 15 C -0.07 0.20 3.98 -11.01 -0.04 0.15 16 16 H 0.10 -0.31 8.10 -2.39 -0.02 -0.33 16 17 C -0.08 0.05 5.29 -19.87 -0.11 -0.06 16 18 C -0.12 0.22 8.63 22.27 0.19 0.42 16 19 C -0.13 0.14 10.05 22.27 0.22 0.36 16 20 C -0.14 -0.02 10.05 22.27 0.22 0.21 16 21 C -0.13 -0.09 10.05 22.27 0.22 0.13 16 22 C -0.13 -0.08 9.71 22.26 0.22 0.13 16 23 C -0.12 0.64 7.29 31.12 0.23 0.86 16 24 C -0.05 0.31 9.54 22.52 0.21 0.52 16 25 C -0.13 0.84 8.64 22.24 0.19 1.03 16 26 H 0.39 -2.34 8.70 -74.06 -0.64 -2.98 16 27 H 0.12 -0.48 7.96 -2.39 -0.02 -0.50 16 28 H -0.31 -0.92 7.11 99.48 0.71 -0.22 16 29 H -0.27 1.12 7.00 99.48 0.70 1.82 16 30 H 0.13 0.30 8.06 -2.91 -0.02 0.28 16 31 H 0.41 0.50 9.06 -74.06 -0.67 -0.17 16 32 H 0.41 -3.91 6.76 -92.71 -0.63 -4.54 16 33 H 0.10 -0.36 6.30 -2.39 -0.02 -0.37 16 34 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.14 -0.85 6.64 -2.91 -0.02 -0.87 16 36 H 0.14 -0.68 8.06 -2.91 -0.02 -0.70 16 37 H 0.13 -0.39 8.06 -2.91 -0.02 -0.42 16 38 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 39 H 0.13 -0.24 8.06 -2.91 -0.02 -0.26 16 40 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.10 -0.82 7.71 -2.39 -0.02 -0.84 16 42 H 0.17 -2.27 6.40 -2.91 -0.02 -2.29 16 43 H 0.16 -1.88 4.81 -2.91 -0.01 -1.89 16 Total: 0.00 -23.12 357.75 -0.59 -23.72 By element: Atomic # 1 Polarization: -13.82 SS G_CDS: -0.84 Total: -14.66 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 3.00 Total: 8.75 kcal Atomic # 7 Polarization: 1.68 SS G_CDS: -2.35 Total: -0.68 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -2.46 Total: -14.53 kcal Atomic # 14 Polarization: -4.66 SS G_CDS: 2.05 Total: -2.61 kcal Total: -23.12 -0.59 -23.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.135 kcal (2) G-P(sol) polarization free energy of solvation -23.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds