Wall clock time and date at job start Sun Mar 7 2021 08:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37793 * 119.84934 * 2 1 4 4 C 1.39698 * 119.90837 * 180.02562 * 3 2 1 5 5 C 1.47534 * 120.19339 * 179.97438 * 4 3 2 6 6 O 1.21586 * 120.00460 * 179.97438 * 5 4 3 7 7 N 1.34780 * 119.99735 * 359.97438 * 5 4 3 8 8 C 1.46502 * 120.00116 * 180.02562 * 7 5 4 9 9 H 1.09005 * 112.84954 * 23.80307 * 8 7 5 10 10 C 1.53779 * 113.61816 * 154.99539 * 8 7 5 11 11 C 1.53775 * 87.08208 * 139.98135 * 10 8 7 12 12 H 1.09000 * 113.61500 * 89.20277 * 11 10 8 13 13 C 1.50695 * 113.61797 * 220.02425 * 11 10 8 14 14 C 1.38237 * 120.00218 * 59.72217 * 13 11 10 15 15 C 1.38231 * 119.99966 * 179.76547 * 14 13 11 16 16 C 1.38234 * 120.00302 * 0.49286 * 15 14 13 17 17 C 1.38237 * 119.99589 * 359.78415 * 16 15 14 18 18 C 1.38235 * 120.00225 * 359.95825 * 17 16 15 19 19 C 1.53780 * 113.61624 * 252.49758 * 8 7 5 20 20 C 1.40143 * 119.61988 * 359.71687 * 4 3 2 21 21 O 1.35647 * 120.15461 * 180.29469 * 20 4 3 22 22 C 1.38710 * 119.69488 * 0.51145 * 20 4 3 23 23 C 1.50699 * 119.95717 * 179.79125 * 22 20 4 24 24 O 1.42905 * 109.46972 * 284.71886 * 23 22 20 25 25 Si 1.86300 * 109.47350 * 164.72150 * 23 22 20 26 26 C 1.38058 * 120.08436 * 359.50959 * 22 20 4 27 27 H 1.09002 * 109.46689 * 270.02808 * 1 2 3 28 28 H 1.08996 * 109.47038 * 30.02146 * 1 2 3 29 29 H 1.08995 * 109.46899 * 150.02740 * 1 2 3 30 30 H 1.08005 * 120.04446 * 359.96980 * 3 2 1 31 31 H 0.96996 * 119.99847 * 359.97438 * 7 5 4 32 32 H 1.08994 * 113.61985 * 254.53248 * 10 8 7 33 33 H 1.09007 * 113.60965 * 25.35101 * 10 8 7 34 34 H 1.07997 * 119.99942 * 0.02562 * 14 13 11 35 35 H 1.07999 * 119.99928 * 180.25539 * 15 14 13 36 36 H 1.07999 * 120.00371 * 179.76754 * 16 15 14 37 37 H 1.08011 * 119.99666 * 179.97438 * 17 16 15 38 38 H 1.07999 * 119.99957 * 180.02562 * 18 17 16 39 39 H 1.09000 * 113.61016 * 334.57015 * 19 8 7 40 40 H 1.09000 * 113.61393 * 105.46558 * 19 8 7 41 41 H 0.96702 * 114.00328 * 270.21357 * 21 20 4 42 42 H 1.09000 * 109.47247 * 44.71950 * 23 22 20 43 43 H 0.96705 * 113.99788 * 180.02562 * 24 23 22 44 44 H 1.48501 * 109.99793 * 59.99689 * 25 23 22 45 45 H 1.48494 * 110.00207 * 181.31742 * 25 23 22 46 46 H 1.07997 * 119.80302 * 180.25654 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1951 0.0000 4 6 3.5898 1.1966 -0.0005 5 6 4.3305 2.4725 -0.0011 6 8 5.5464 2.4698 -0.0011 7 7 3.6593 3.6413 -0.0016 8 6 4.3947 4.9084 -0.0028 9 1 5.4019 4.8128 -0.4085 10 6 3.5993 6.0818 -0.5988 11 6 4.1895 6.9500 0.5248 12 1 5.1404 7.4147 0.2640 13 6 3.2040 7.9254 1.1151 14 6 2.0424 7.4628 1.7047 15 6 1.1407 8.3573 2.2504 16 6 1.3957 9.7149 2.1974 17 6 2.5546 10.1777 1.6027 18 6 3.4589 9.2830 1.0617 19 6 4.3380 5.6548 1.3405 20 6 4.2837 -0.0210 0.0049 21 8 5.6402 -0.0322 0.0105 22 6 3.5771 -1.2146 0.0001 23 6 4.3173 -2.5273 0.0012 24 8 4.8550 -2.7720 -1.3001 25 14 3.1446 -3.9012 0.4569 26 6 2.1966 -1.2016 0.0001 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6511 2.1295 -0.0005 31 1 2.6893 3.6435 -0.0020 32 1 3.9311 6.3728 -1.5954 33 1 2.5187 5.9551 -0.5327 34 1 1.8413 6.4024 1.7427 35 1 0.2352 7.9957 2.7147 36 1 0.6895 10.4139 2.6204 37 1 2.7537 11.2385 1.5610 38 1 4.3645 9.6446 0.5975 39 1 3.4593 5.4119 1.9381 40 1 5.2661 5.6010 1.9095 41 1 6.0371 -0.0341 -0.8713 42 1 5.1288 -2.4863 0.7278 43 1 5.3454 -3.6023 -1.3732 44 1 2.0336 -3.9676 -0.5262 45 1 3.8693 -5.1968 0.4926 46 1 1.6511 -2.1336 0.0005 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13422088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:11 Heat of formation + Delta-G solvation = -26.972957 kcal Electronic energy + Delta-G solvation = -28645.829524 eV Core-core repulsion = 24660.880704 eV Total energy + Delta-G solvation = -3984.948820 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.86974 -41.10166 -39.90878 -38.63075 -38.05030 -37.71016 -34.88752 -33.20478 -32.82095 -31.80403 -31.44309 -27.55736 -26.80676 -26.71766 -26.45731 -24.69764 -23.55839 -22.39334 -21.82719 -21.48677 -20.34430 -19.49872 -18.63862 -18.26088 -18.20463 -17.49546 -16.92374 -16.66169 -16.37244 -16.09327 -15.97049 -15.72375 -15.42798 -15.30482 -15.08165 -14.83779 -14.45119 -14.26991 -14.16419 -14.09621 -13.95984 -13.74750 -13.46250 -13.20370 -13.13553 -12.98439 -12.54237 -12.52152 -12.44436 -12.30228 -11.88101 -11.80865 -11.74542 -11.62627 -11.45373 -10.89018 -10.49280 -10.25423 -9.99797 -9.79761 -9.54015 -9.50247 -4.96171 -0.35583 0.05778 0.44780 0.52156 1.23509 1.55414 1.69079 1.87089 2.06980 2.51358 2.85442 3.16703 3.27637 3.44056 3.54500 3.65876 3.70680 3.72789 3.81802 3.93155 4.05965 4.10421 4.14664 4.16008 4.18877 4.30718 4.33687 4.51112 4.56861 4.60230 4.63712 4.69909 4.73237 4.81215 4.83201 4.90636 4.97041 4.97824 5.01127 5.11198 5.17337 5.19103 5.22957 5.23590 5.41265 5.52402 5.60664 5.66354 5.66743 5.75493 6.14396 6.46448 6.51457 6.66409 7.15262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.094 4.094 3 C -0.061 4.061 4 C -0.179 4.179 5 C 0.557 3.443 6 O -0.565 6.565 7 N -0.702 5.702 8 C 0.120 3.880 9 H 0.097 0.903 10 C -0.122 4.122 11 C -0.067 4.067 12 H 0.104 0.896 13 C -0.077 4.077 14 C -0.124 4.124 15 C -0.128 4.128 16 C -0.138 4.138 17 C -0.131 4.131 18 C -0.131 4.131 19 C -0.141 4.141 20 C 0.160 3.840 21 O -0.491 6.491 22 C -0.117 4.117 23 C -0.088 4.088 24 O -0.556 6.556 25 Si 0.775 3.225 26 C -0.081 4.081 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.163 0.837 31 H 0.414 0.586 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.401 0.599 42 H 0.078 0.922 43 H 0.395 0.605 44 H -0.278 1.278 45 H -0.286 1.286 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.467 0.288 1.048 7.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.094 4.094 3 C -0.079 4.079 4 C -0.183 4.183 5 C 0.345 3.655 6 O -0.444 6.444 7 N -0.354 5.354 8 C 0.015 3.985 9 H 0.115 0.885 10 C -0.160 4.160 11 C -0.086 4.086 12 H 0.122 0.878 13 C -0.077 4.077 14 C -0.142 4.142 15 C -0.146 4.146 16 C -0.156 4.156 17 C -0.149 4.149 18 C -0.149 4.149 19 C -0.180 4.180 20 C 0.114 3.886 21 O -0.302 6.302 22 C -0.118 4.118 23 C -0.196 4.196 24 O -0.366 6.366 25 Si 0.678 3.322 26 C -0.099 4.099 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.180 0.820 31 H 0.252 0.748 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.259 0.741 42 H 0.096 0.904 43 H 0.245 0.755 44 H -0.205 1.205 45 H -0.213 1.213 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.293 0.131 1.273 7.405 hybrid contribution 1.239 -0.223 -1.288 1.801 sum -6.054 -0.092 -0.014 6.055 Atomic orbital electron populations 1.20919 0.87859 1.04335 1.04162 1.20118 0.98209 0.91630 0.99446 1.21429 0.90943 0.99837 0.95687 1.20421 0.95106 0.92548 1.10241 1.18329 0.86927 0.84440 0.75786 1.90798 1.14996 1.87930 1.50682 1.45774 1.10719 1.04493 1.74400 1.22507 0.97173 0.81250 0.97569 0.88473 1.23399 1.01039 0.92847 0.98690 1.21289 0.98027 0.92718 0.96524 0.87820 1.19784 0.95538 0.93842 0.98538 1.21217 0.93907 1.00521 0.98547 1.21442 1.00075 0.93478 0.99565 1.21457 0.97835 0.96394 0.99889 1.21425 0.94660 1.00480 0.98321 1.21313 1.00163 0.93068 1.00345 1.23599 1.03123 0.94463 0.96811 1.18535 0.83642 0.90854 0.95594 1.84639 1.15296 1.96076 1.34233 1.19740 0.94144 0.93474 1.04452 1.25036 1.04527 1.02127 0.87882 1.86503 1.74088 1.45874 1.30167 0.93905 0.77293 0.73379 0.87634 1.21364 0.92233 0.99761 0.96523 0.89075 0.89690 0.90734 0.81995 0.74793 0.89903 0.87884 0.84586 0.84521 0.84968 0.85034 0.85274 0.88399 0.91844 0.74055 0.90353 0.75479 1.20526 1.21306 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.99 10.00 71.24 0.71 1.70 16 2 C -0.09 0.26 5.87 -19.90 -0.12 0.14 16 3 C -0.06 0.13 9.18 22.52 0.21 0.34 16 4 C -0.18 -0.90 5.89 -20.01 -0.12 -1.01 16 5 C 0.56 4.21 7.76 86.69 0.67 4.88 16 6 O -0.56 -9.10 14.76 16.93 0.25 -8.85 16 7 N -0.70 0.15 5.31 -443.19 -2.35 -2.20 16 8 C 0.12 0.02 4.24 45.52 0.19 0.21 16 9 H 0.10 0.48 7.46 -2.38 -0.02 0.46 16 10 C -0.12 0.48 7.29 31.12 0.23 0.70 16 11 C -0.07 0.13 3.98 -11.02 -0.04 0.08 16 12 H 0.10 -0.23 8.09 -2.39 -0.02 -0.25 16 13 C -0.08 -0.01 5.29 -19.87 -0.11 -0.12 16 14 C -0.12 0.12 8.60 22.27 0.19 0.31 16 15 C -0.13 0.06 10.05 22.27 0.22 0.28 16 16 C -0.14 -0.07 10.05 22.27 0.22 0.15 16 17 C -0.13 -0.14 10.05 22.27 0.22 0.08 16 18 C -0.13 -0.15 9.71 22.27 0.22 0.07 16 19 C -0.14 0.08 7.25 31.12 0.23 0.31 16 20 C 0.16 1.28 6.69 22.85 0.15 1.43 16 21 O -0.49 -5.32 10.90 -68.70 -0.75 -6.07 16 22 C -0.12 -0.51 5.30 -19.79 -0.10 -0.61 16 23 C -0.09 -0.19 2.37 71.24 0.17 -0.02 16 24 O -0.56 -1.98 12.86 -148.98 -1.92 -3.90 16 25 Si 0.77 -1.61 30.19 68.60 2.07 0.46 16 26 C -0.08 0.00 8.30 22.30 0.19 0.18 16 27 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.08 -0.92 8.08 -2.39 -0.02 -0.94 16 29 H 0.07 -0.64 8.08 -2.39 -0.02 -0.66 16 30 H 0.16 -1.55 6.40 -2.91 -0.02 -1.57 16 31 H 0.41 -2.86 6.76 -92.71 -0.63 -3.49 16 32 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.10 -0.67 7.69 -2.38 -0.02 -0.69 16 34 H 0.14 -0.68 6.67 -2.91 -0.02 -0.70 16 35 H 0.14 -0.58 8.06 -2.91 -0.02 -0.61 16 36 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 37 H 0.13 -0.25 8.06 -2.90 -0.02 -0.28 16 38 H 0.13 -0.18 8.05 -2.91 -0.02 -0.21 16 39 H 0.10 -0.23 6.32 -2.39 -0.02 -0.24 16 40 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.40 2.70 9.06 -74.06 -0.67 2.03 16 42 H 0.08 0.17 7.82 -2.39 -0.02 0.15 16 43 H 0.39 -1.63 8.74 -74.05 -0.65 -2.28 16 44 H -0.28 -0.57 6.74 99.48 0.67 0.10 16 45 H -0.29 -0.67 7.11 99.48 0.71 0.04 16 46 H 0.15 -0.49 4.87 -2.91 -0.01 -0.50 16 Total: 0.00 -22.38 378.46 -0.26 -22.64 By element: Atomic # 1 Polarization: -10.30 SS G_CDS: -0.90 Total: -11.20 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 3.34 Total: 9.12 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: -2.35 Total: -2.20 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -2.41 Total: -18.82 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: 2.07 Total: 0.46 kcal Total: -22.38 -0.26 -22.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13422088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.333 kcal (2) G-P(sol) polarization free energy of solvation -22.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds