Wall clock time and date at job start Sun Mar 7 2021 08:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39043 * 110.99815 * 236.04799 * 2 1 3 5 5 C 1.39206 * 119.92937 * 239.73104 * 4 2 1 6 6 C 1.50693 * 119.96798 * 359.97310 * 5 4 2 7 7 O 1.42906 * 109.46958 * 75.00154 * 6 5 4 8 8 Si 1.86295 * 109.47443 * 195.00119 * 6 5 4 9 9 C 1.37634 * 120.06756 * 179.72322 * 5 4 2 10 10 C 1.39785 * 119.92582 * 0.54888 * 9 5 4 11 11 C 1.47520 * 120.06381 * 179.70489 * 10 9 5 12 12 O 1.21594 * 120.00407 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00129 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00356 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.84716 * 334.66440 * 14 13 11 16 16 C 1.53774 * 113.61439 * 105.86177 * 14 13 11 17 17 C 1.53956 * 87.02001 * 139.94982 * 16 14 13 18 18 H 1.09004 * 113.53552 * 89.18956 * 17 16 14 19 19 C 1.50701 * 113.66915 * 220.06333 * 17 16 14 20 20 C 1.38234 * 119.99824 * 37.28898 * 19 17 16 21 21 C 1.38237 * 119.99879 * 179.74253 * 20 19 17 22 22 C 1.38227 * 119.99754 * 0.52690 * 21 20 19 23 23 C 1.38230 * 120.00405 * 359.74859 * 22 21 20 24 24 C 1.38232 * 119.99914 * 359.97438 * 23 22 21 25 25 C 1.53779 * 87.11071 * 334.63876 * 17 16 14 26 26 C 1.39802 * 119.86563 * 359.72133 * 10 9 5 27 27 C 1.37590 * 119.93445 * 0.02562 * 26 10 9 28 28 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 29 29 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 30 30 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 31 31 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 32 32 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 34 34 H 1.09001 * 109.47417 * 315.00615 * 6 5 4 35 35 H 0.96698 * 113.99968 * 60.00207 * 7 6 5 36 36 H 1.48507 * 109.99776 * 58.68457 * 8 6 5 37 37 H 1.48502 * 110.00176 * 180.02562 * 8 6 5 38 38 H 1.07994 * 120.03505 * 180.28882 * 9 5 4 39 39 H 0.97002 * 119.99415 * 359.97438 * 13 11 10 40 40 H 1.09000 * 113.61776 * 254.52863 * 16 14 13 41 41 H 1.09001 * 113.61435 * 25.43227 * 16 14 13 42 42 H 1.08005 * 119.99706 * 359.97438 * 20 19 17 43 43 H 1.08006 * 119.99463 * 180.30033 * 21 20 19 44 44 H 1.08001 * 119.99926 * 179.76610 * 22 21 20 45 45 H 1.07999 * 120.00189 * 179.97438 * 23 22 21 46 46 H 1.08003 * 120.00218 * 179.97438 * 24 23 22 47 47 H 1.09003 * 113.61413 * 270.80979 * 25 17 16 48 48 H 1.08999 * 113.61721 * 139.91273 * 25 17 16 49 49 H 1.08004 * 120.03724 * 179.97438 * 26 10 9 50 50 H 1.08001 * 119.97077 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7250 -1.0768 5 6 2.7839 -1.8297 -0.8520 6 6 3.1270 -2.2377 0.5575 7 8 1.9957 -2.8708 1.1589 8 14 4.5611 -3.4265 0.5282 9 6 3.2740 -2.5528 -1.9156 10 6 2.9603 -2.1699 -3.2228 11 6 3.4893 -2.9389 -4.3652 12 8 4.1985 -3.9071 -4.1703 13 7 3.1864 -2.5682 -5.6252 14 6 3.7122 -3.3315 -6.7597 15 1 4.6352 -3.8605 -6.5226 16 6 2.6580 -4.2117 -7.4515 17 6 3.3010 -3.7931 -8.7862 18 1 4.1112 -4.4495 -9.1039 19 6 2.3012 -3.5232 -9.8811 20 6 1.0979 -2.9117 -9.5828 21 6 0.1831 -2.6594 -10.5880 22 6 0.4670 -3.0283 -11.8895 23 6 1.6679 -3.6449 -12.1868 24 6 2.5851 -3.8921 -11.1827 25 6 3.7837 -2.5230 -8.0659 26 6 2.1445 -1.0566 -3.4454 27 6 1.6534 -0.3409 -2.3778 28 1 -0.3634 -1.0252 0.0708 29 1 -0.3633 0.4513 -0.9233 30 1 -0.3633 0.5740 0.8525 31 1 1.6461 1.8947 0.8901 32 1 3.0851 1.3422 0.0005 33 1 1.6460 1.8948 -0.8900 34 1 3.3990 -1.3545 1.1355 35 1 1.6978 -3.6659 0.6962 36 1 5.7344 -2.7910 -0.1235 37 1 4.9089 -3.8370 1.9124 38 1 3.9036 -3.4125 -1.7404 39 1 2.6203 -1.7961 -5.7807 40 1 2.7623 -5.2738 -7.2297 41 1 1.6373 -3.8504 -7.3263 42 1 0.8741 -2.6278 -8.5651 43 1 -0.7551 -2.1772 -10.3556 44 1 -0.2494 -2.8346 -12.6742 45 1 1.8895 -3.9335 -13.2037 46 1 3.5233 -4.3742 -11.4149 47 1 3.0713 -1.6991 -8.1090 48 1 4.7955 -2.2237 -8.3394 49 1 1.9007 -0.7580 -4.4543 50 1 1.0234 0.5195 -2.5491 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13422196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:14 Heat of formation + Delta-G solvation = 34.604082 kcal Electronic energy + Delta-G solvation = -30482.302968 eV Core-core repulsion = 26442.205372 eV Total energy + Delta-G solvation = -4040.097596 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.81533 -41.15280 -40.15601 -38.69342 -37.80908 -37.17549 -34.88338 -32.79396 -31.88053 -31.69705 -31.05224 -28.55268 -26.90765 -26.82402 -26.68247 -25.37021 -23.59573 -23.36233 -22.85225 -22.18890 -21.26883 -20.37768 -18.97634 -18.22060 -17.84176 -17.63434 -17.13291 -16.70703 -16.41034 -16.23990 -16.15498 -15.94689 -15.80796 -15.53489 -15.30782 -15.24380 -14.92392 -14.71591 -14.29482 -14.24030 -14.15225 -13.99810 -13.91894 -13.52472 -13.43302 -13.16755 -13.08376 -12.94016 -12.66800 -12.55280 -12.51858 -12.28970 -12.24884 -12.04323 -11.79432 -11.64275 -11.44113 -11.00427 -10.39763 -10.16858 -10.09807 -9.79717 -9.76622 -9.52759 -9.50169 -5.03196 -0.37653 0.16024 0.45270 0.52369 1.27144 1.56050 1.67880 1.89122 2.07977 2.64195 2.79388 2.85972 3.45329 3.51967 3.59914 3.68296 3.72983 3.75059 3.82957 3.95475 4.04296 4.07422 4.14651 4.16910 4.20854 4.24428 4.31354 4.35394 4.44595 4.49343 4.57495 4.58925 4.64276 4.65869 4.70244 4.75372 4.80678 4.85330 4.92468 4.99369 4.99723 5.03312 5.04535 5.11723 5.13802 5.19191 5.23811 5.26635 5.51950 5.58177 5.61077 5.66778 5.76258 5.84612 6.14748 6.28991 6.47216 6.82010 7.13877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.524 5.524 3 C 0.025 3.975 4 C 0.137 3.863 5 C -0.117 4.117 6 C -0.037 4.037 7 O -0.541 6.541 8 Si 0.736 3.264 9 C -0.058 4.058 10 C -0.148 4.148 11 C 0.559 3.441 12 O -0.574 6.574 13 N -0.701 5.701 14 C 0.120 3.880 15 H 0.101 0.899 16 C -0.140 4.140 17 C -0.068 4.068 18 H 0.104 0.896 19 C -0.076 4.076 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.123 4.123 26 C -0.056 4.056 27 C -0.157 4.157 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.107 0.893 35 H 0.389 0.611 36 H -0.295 1.295 37 H -0.289 1.289 38 H 0.140 0.860 39 H 0.414 0.586 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.101 0.899 48 H 0.082 0.918 49 H 0.160 0.840 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 3.661 -4.569 7.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.245 5.245 3 C -0.121 4.121 4 C 0.042 3.958 5 C -0.119 4.119 6 C -0.149 4.149 7 O -0.348 6.348 8 Si 0.643 3.357 9 C -0.077 4.077 10 C -0.151 4.151 11 C 0.347 3.653 12 O -0.454 6.454 13 N -0.352 5.352 14 C 0.015 3.985 15 H 0.119 0.881 16 C -0.179 4.179 17 C -0.087 4.087 18 H 0.123 0.877 19 C -0.076 4.076 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.149 4.149 25 C -0.161 4.161 26 C -0.075 4.075 27 C -0.177 4.177 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.124 0.876 35 H 0.238 0.762 36 H -0.222 1.222 37 H -0.217 1.217 38 H 0.158 0.842 39 H 0.253 0.747 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.148 0.852 47 H 0.120 0.880 48 H 0.101 0.899 49 H 0.177 0.823 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.946 3.112 -3.320 5.421 hybrid contribution -0.439 1.128 -0.731 1.414 sum -3.385 4.240 -4.052 6.772 Atomic orbital electron populations 1.22436 0.84273 1.02904 1.01687 1.59370 1.09786 1.14649 1.40732 1.22515 1.00512 0.86760 1.02290 1.18983 0.94129 0.93132 0.89573 1.20251 0.99479 0.96306 0.95815 1.24691 0.97300 1.01831 0.91056 1.86520 1.48142 1.45516 1.54638 0.94215 0.76016 0.85949 0.79544 1.21082 0.97058 0.98296 0.91214 1.19873 1.03293 0.98967 0.92973 1.18405 0.79573 0.83477 0.83825 1.90790 1.39402 1.29332 1.85924 1.45794 1.52101 1.32864 1.04481 1.22527 0.97945 0.94060 0.83943 0.88125 1.23622 0.99631 1.00511 0.94139 1.21337 0.97061 0.98528 0.91771 0.87746 1.19799 0.95303 0.98352 0.94182 1.21221 0.93556 0.99373 1.00032 1.21438 1.00148 0.99961 0.93119 1.21447 0.97580 0.99191 0.97450 1.21421 0.94393 0.99094 1.00016 1.21321 1.00143 1.00594 0.92813 1.23398 1.03254 0.96884 0.92602 1.21431 0.93424 0.92091 1.00595 1.21846 1.01996 1.01604 0.92279 0.91440 0.93928 0.90242 0.89900 0.91868 0.93748 0.87603 0.76235 1.22212 1.21659 0.84240 0.74729 0.91468 0.88464 0.84536 0.84651 0.85085 0.85085 0.85210 0.88043 0.89912 0.82276 0.83447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 9.34 127.69 1.19 1.12 16 2 N -0.52 -0.29 4.20 -745.08 -3.13 -3.42 16 3 C 0.03 -0.06 9.32 127.69 1.19 1.13 16 4 C 0.14 0.09 4.69 38.47 0.18 0.27 16 5 C -0.12 -0.25 5.27 -19.78 -0.10 -0.36 16 6 C -0.04 -0.11 2.33 71.23 0.17 0.06 16 7 O -0.54 -1.46 12.88 -148.98 -1.92 -3.37 16 8 Si 0.74 2.43 29.92 68.60 2.05 4.48 16 9 C -0.06 -0.15 8.19 22.50 0.18 0.04 16 10 C -0.15 -0.12 5.88 -20.08 -0.12 -0.24 16 11 C 0.56 1.95 7.76 86.69 0.67 2.62 16 12 O -0.57 -6.68 15.95 -4.01 -0.06 -6.74 16 13 N -0.70 2.20 5.31 -443.22 -2.35 -0.15 16 14 C 0.12 -0.28 4.21 45.51 0.19 -0.09 16 15 H 0.10 0.19 7.50 -2.39 -0.02 0.18 16 16 C -0.14 0.41 7.27 31.18 0.23 0.63 16 17 C -0.07 0.24 3.98 -10.95 -0.04 0.20 16 18 H 0.10 -0.40 8.10 -2.38 -0.02 -0.42 16 19 C -0.08 0.07 5.29 -19.87 -0.11 -0.03 16 20 C -0.12 0.23 8.63 22.27 0.19 0.42 16 21 C -0.13 0.12 10.05 22.27 0.22 0.35 16 22 C -0.14 -0.02 10.05 22.27 0.22 0.21 16 23 C -0.13 -0.07 10.05 22.27 0.22 0.15 16 24 C -0.13 -0.04 9.71 22.27 0.22 0.18 16 25 C -0.12 0.69 7.30 31.12 0.23 0.91 16 26 C -0.06 0.26 9.53 22.50 0.21 0.48 16 27 C -0.16 0.54 8.57 22.36 0.19 0.73 16 28 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.04 -0.20 7.10 -2.39 -0.02 -0.22 16 30 H 0.08 -0.24 8.14 -2.38 -0.02 -0.26 16 31 H 0.08 -0.28 8.14 -2.38 -0.02 -0.29 16 32 H 0.06 -0.05 8.12 -2.39 -0.02 -0.07 16 33 H 0.04 -0.21 7.45 -2.39 -0.02 -0.22 16 34 H 0.11 0.56 7.78 -2.39 -0.02 0.54 16 35 H 0.39 -1.91 8.70 -74.06 -0.64 -2.56 16 36 H -0.30 -2.82 7.11 99.48 0.71 -2.11 16 37 H -0.29 -2.75 7.11 99.48 0.71 -2.04 16 38 H 0.14 0.39 4.70 -2.91 -0.01 0.38 16 39 H 0.41 -3.92 6.73 -92.71 -0.62 -4.54 16 40 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.10 -0.43 6.31 -2.39 -0.02 -0.45 16 42 H 0.14 -0.82 6.65 -2.91 -0.02 -0.84 16 43 H 0.14 -0.62 8.06 -2.91 -0.02 -0.65 16 44 H 0.13 -0.38 8.06 -2.91 -0.02 -0.40 16 45 H 0.13 -0.31 8.06 -2.91 -0.02 -0.34 16 46 H 0.13 -0.30 8.06 -2.91 -0.02 -0.33 16 47 H 0.10 -0.79 7.70 -2.39 -0.02 -0.81 16 48 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 49 H 0.16 -1.86 6.39 -2.91 -0.02 -1.88 16 50 H 0.15 -1.05 7.01 -2.91 -0.02 -1.07 16 Total: 0.00 -19.08 403.05 -0.33 -19.41 By element: Atomic # 1 Polarization: -18.71 SS G_CDS: -0.26 Total: -18.97 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.35 Total: 8.78 kcal Atomic # 7 Polarization: 1.91 SS G_CDS: -5.48 Total: -3.58 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -1.98 Total: -10.12 kcal Atomic # 14 Polarization: 2.43 SS G_CDS: 2.05 Total: 4.48 kcal Total: -19.08 -0.33 -19.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13422196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.013 kcal (2) G-P(sol) polarization free energy of solvation -19.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds