Wall clock time and date at job start Sun Mar 7 2021 08:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86301 * 109.47228 * 2 1 4 4 C 1.50698 * 109.47454 * 120.00184 * 2 1 3 5 5 C 1.32696 * 124.68780 * 64.99557 * 4 2 1 6 6 C 1.44500 * 113.10118 * 179.74739 * 5 4 2 7 7 C 1.47042 * 123.49323 * 180.28197 * 6 5 4 8 8 O 1.21663 * 119.99992 * 180.19545 * 7 6 5 9 9 N 1.34771 * 120.00158 * 0.18840 * 7 6 5 10 10 C 1.46500 * 120.00193 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84720 * 23.81386 * 10 9 7 12 12 C 1.53787 * 113.61474 * 155.00391 * 10 9 7 13 13 C 1.53776 * 87.08338 * 139.98323 * 12 10 9 14 14 H 1.09007 * 113.61248 * 89.20091 * 13 12 10 15 15 C 1.50692 * 113.61587 * 220.02028 * 13 12 10 16 16 C 1.38235 * 120.00021 * 59.72831 * 15 13 12 17 17 C 1.38239 * 120.00002 * 179.81313 * 16 15 13 18 18 C 1.38233 * 119.99937 * 0.38966 * 17 16 15 19 19 C 1.38237 * 120.00138 * 359.86511 * 18 17 16 20 20 C 1.38234 * 120.00027 * 240.00177 * 15 13 12 21 21 C 1.53783 * 113.61725 * 252.50048 * 10 9 7 22 22 C 1.36227 * 113.01799 * 0.43657 * 6 5 4 23 23 Cl 1.73599 * 124.61007 * 179.85055 * 22 6 5 24 24 S 1.70447 * 110.78585 * 359.57835 * 22 6 5 25 25 H 0.96703 * 114.00090 * 299.99693 * 1 2 3 26 26 H 1.08999 * 109.47311 * 239.99906 * 2 1 3 27 27 H 1.48492 * 110.00115 * 178.68094 * 3 2 1 28 28 H 1.48497 * 109.99941 * 300.00244 * 3 2 1 29 29 H 1.08004 * 123.44544 * 359.97438 * 5 4 2 30 30 H 0.97002 * 119.99739 * 0.02562 * 9 7 6 31 31 H 1.08997 * 113.61362 * 254.53751 * 12 10 9 32 32 H 1.09004 * 113.61288 * 25.43584 * 12 10 9 33 33 H 1.07998 * 120.00152 * 0.02562 * 16 15 13 34 34 H 1.07995 * 120.00174 * 180.23356 * 17 16 15 35 35 H 1.07997 * 120.00366 * 179.83697 * 18 17 16 36 36 H 1.08001 * 120.00320 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.00319 * 359.97374 * 20 15 13 38 38 H 1.08995 * 113.61709 * 334.56747 * 21 10 9 39 39 H 1.09000 * 113.60944 * 105.47466 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7483 -1.9997 1.4857 6 6 2.3409 -2.4200 2.7347 7 6 2.2804 -3.8005 3.2376 8 8 2.7991 -4.0838 4.3010 9 7 1.6502 -4.7518 2.5206 10 6 1.5904 -6.1273 3.0213 11 1 1.7007 -6.1887 4.1040 12 6 0.3965 -6.9296 2.4773 13 6 1.3542 -8.1273 2.3630 14 1 1.3998 -8.7375 3.2651 15 6 1.1523 -8.9446 1.1132 16 6 1.2975 -8.3555 -0.1289 17 6 1.1160 -9.1062 -1.2754 18 6 0.7814 -10.4440 -1.1798 19 6 0.6310 -11.0319 0.0623 20 6 0.8162 -10.2821 1.2088 21 6 2.4960 -7.1031 2.2515 22 6 2.9585 -1.4042 3.3998 23 17 3.7638 -1.5723 4.9285 24 16 2.8398 0.0529 2.5235 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5138 -0.8900 27 1 3.5345 1.7703 0.0321 28 1 1.5614 2.4679 -1.2084 29 1 1.2144 -2.6673 0.8255 30 1 1.2369 -4.5260 1.6726 31 1 -0.4001 -7.0755 3.2067 32 1 0.0306 -6.5698 1.5156 33 1 1.5561 -7.3096 -0.2036 34 1 1.2332 -8.6469 -2.2458 35 1 0.6370 -11.0299 -2.0755 36 1 0.3692 -12.0770 0.1370 37 1 0.6988 -10.7414 2.1792 38 1 2.7040 -6.7909 1.2282 39 1 3.3942 -7.3893 2.7988 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:21 Heat of formation + Delta-G solvation = 20.576185 kcal Electronic energy + Delta-G solvation = -24862.367445 eV Core-core repulsion = 21083.052776 eV Total energy + Delta-G solvation = -3779.314669 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.053 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57300 -40.54573 -39.10127 -38.53981 -37.93629 -36.93976 -34.71303 -31.91702 -31.74454 -31.46440 -27.16876 -26.71621 -26.65954 -24.94679 -23.56775 -22.45825 -22.04773 -20.95808 -20.19889 -19.35262 -18.33331 -17.83050 -17.63801 -17.00129 -16.43437 -16.42005 -16.07458 -15.99823 -15.70919 -15.45947 -15.33515 -14.75912 -14.54143 -14.38222 -14.24092 -14.13703 -14.04281 -13.92963 -13.45877 -13.11438 -12.91705 -12.60062 -12.53207 -12.38039 -12.33110 -12.13008 -11.87286 -11.79706 -11.65043 -11.44839 -10.91580 -10.57378 -10.15634 -9.89449 -9.81228 -9.64666 -9.53886 -5.13948 -0.63258 -0.19149 0.43451 0.48091 0.50646 0.72040 1.04477 1.18917 1.58019 1.90149 2.15813 2.17496 2.84167 3.28504 3.45894 3.60012 3.68526 3.73124 3.82783 3.88440 3.94371 4.05618 4.14702 4.18714 4.29565 4.37348 4.45250 4.56820 4.62419 4.70932 4.73998 4.77188 4.83548 4.95571 4.98317 5.01788 5.10757 5.17443 5.22245 5.53065 5.59342 5.64978 5.74462 6.13019 6.45985 6.70424 7.13887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.018 4.018 3 Si 0.713 3.287 4 C -0.229 4.229 5 C -0.068 4.068 6 C -0.168 4.168 7 C 0.570 3.430 8 O -0.561 6.561 9 N -0.699 5.699 10 C 0.122 3.878 11 H 0.101 0.899 12 C -0.122 4.122 13 C -0.067 4.067 14 H 0.105 0.895 15 C -0.076 4.076 16 C -0.125 4.125 17 C -0.129 4.129 18 C -0.138 4.138 19 C -0.131 4.131 20 C -0.130 4.130 21 C -0.141 4.141 22 C -0.139 4.139 23 Cl 0.003 6.997 24 S 0.265 5.735 25 H 0.398 0.602 26 H 0.135 0.865 27 H -0.262 1.262 28 H -0.266 1.266 29 H 0.179 0.821 30 H 0.414 0.586 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 2.354 -3.698 5.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.132 4.132 3 Si 0.616 3.384 4 C -0.346 4.346 5 C -0.097 4.097 6 C -0.188 4.188 7 C 0.356 3.644 8 O -0.440 6.440 9 N -0.350 5.350 10 C 0.017 3.983 11 H 0.119 0.881 12 C -0.160 4.160 13 C -0.086 4.086 14 H 0.123 0.877 15 C -0.077 4.077 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.156 4.156 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.180 4.180 22 C -0.286 4.286 23 Cl 0.032 6.968 24 S 0.531 5.469 25 H 0.249 0.751 26 H 0.152 0.848 27 H -0.188 1.188 28 H -0.191 1.191 29 H 0.196 0.804 30 H 0.252 0.748 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.114 0.886 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.054 3.907 -3.506 5.637 hybrid contribution -0.244 -2.168 -0.346 2.209 sum -2.298 1.739 -3.852 4.811 Atomic orbital electron populations 1.86517 1.16125 1.81981 1.50470 1.24428 0.85523 1.08731 0.94517 0.94311 0.79786 0.75879 0.88453 1.24952 1.08236 0.98667 1.02762 1.21127 0.98922 0.95517 0.94132 1.20348 1.06385 0.94119 0.97909 1.17740 0.78195 0.84577 0.83840 1.90856 1.47092 1.82594 1.23474 1.45712 1.56308 1.08390 1.24579 1.22509 0.97503 0.78929 0.99344 0.88139 1.23398 0.96235 0.93695 1.02698 1.21300 0.97040 0.94255 0.96003 0.87703 1.19796 0.99181 0.94060 0.94620 1.21210 1.00511 1.00670 0.91849 1.21434 0.99453 0.94523 0.99278 1.21453 1.00161 0.95757 0.98255 1.21431 0.99954 1.00710 0.92761 1.21324 1.00202 0.94054 0.99251 1.23594 0.97405 0.95335 1.01651 1.25815 1.04692 1.02164 0.95925 1.98426 1.76324 1.97510 1.24585 1.83182 1.50000 1.04866 1.08872 0.75117 0.84823 1.18814 1.19122 0.80355 0.74837 0.89828 0.88110 0.84715 0.84698 0.85002 0.84969 0.85146 0.88607 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 3.43 12.88 -148.98 -1.92 1.51 16 2 C -0.02 0.12 2.94 71.24 0.21 0.33 16 3 Si 0.71 -4.22 30.92 68.60 2.12 -2.10 16 4 C -0.23 1.10 5.65 24.51 0.14 1.24 16 5 C -0.07 0.26 9.75 22.69 0.22 0.49 16 6 C -0.17 -0.42 5.98 -19.84 -0.12 -0.54 16 7 C 0.57 3.34 7.79 86.55 0.67 4.02 16 8 O -0.56 -7.74 14.51 -4.23 -0.06 -7.80 16 9 N -0.70 0.67 5.33 -443.64 -2.37 -1.69 16 10 C 0.12 -0.07 4.24 45.52 0.19 0.13 16 11 H 0.10 0.38 7.46 -2.39 -0.02 0.36 16 12 C -0.12 0.49 7.30 31.12 0.23 0.72 16 13 C -0.07 0.14 3.98 -11.02 -0.04 0.10 16 14 H 0.10 -0.27 8.09 -2.38 -0.02 -0.29 16 15 C -0.08 -0.02 5.29 -19.87 -0.11 -0.13 16 16 C -0.12 0.06 8.60 22.27 0.19 0.25 16 17 C -0.13 -0.03 10.05 22.27 0.22 0.20 16 18 C -0.14 -0.14 10.05 22.27 0.22 0.08 16 19 C -0.13 -0.17 10.05 22.27 0.22 0.05 16 20 C -0.13 -0.16 9.71 22.27 0.22 0.06 16 21 C -0.14 0.15 7.25 31.12 0.23 0.37 16 22 C -0.14 -0.53 6.87 67.35 0.46 -0.07 16 23 Cl 0.00 0.02 27.20 -2.72 -0.07 -0.05 16 24 S 0.27 -0.72 20.19 -56.49 -1.14 -1.86 16 25 H 0.40 -5.39 8.70 -74.06 -0.64 -6.03 16 26 H 0.13 -1.00 7.96 -2.39 -0.02 -1.02 16 27 H -0.26 0.32 7.11 99.48 0.71 1.03 16 28 H -0.27 -0.13 7.11 99.48 0.71 0.58 16 29 H 0.18 -1.61 7.10 -2.91 -0.02 -1.63 16 30 H 0.41 -2.89 7.27 -92.71 -0.67 -3.56 16 31 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.10 -0.61 7.69 -2.39 -0.02 -0.63 16 33 H 0.14 -0.58 6.67 -2.91 -0.02 -0.60 16 34 H 0.14 -0.45 8.06 -2.91 -0.02 -0.48 16 35 H 0.13 -0.28 8.06 -2.91 -0.02 -0.31 16 36 H 0.13 -0.24 8.06 -2.91 -0.02 -0.26 16 37 H 0.13 -0.20 8.05 -2.91 -0.02 -0.22 16 38 H 0.10 -0.23 6.32 -2.39 -0.02 -0.24 16 39 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 Total: 0.00 -17.85 356.52 -0.44 -18.30 By element: Atomic # 1 Polarization: -13.42 SS G_CDS: -0.17 Total: -13.59 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 3.16 Total: 7.29 kcal Atomic # 7 Polarization: 0.67 SS G_CDS: -2.37 Total: -1.69 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -1.98 Total: -6.29 kcal Atomic # 14 Polarization: -4.22 SS G_CDS: 2.12 Total: -2.10 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -1.14 Total: -1.86 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.07 Total: -0.05 kcal Total: -17.85 -0.44 -18.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.872 kcal (2) G-P(sol) polarization free energy of solvation -17.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds