Wall clock time and date at job start Sun Mar 7 2021 08:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86306 * 109.47002 * 2 1 4 4 C 1.50706 * 109.46930 * 119.99142 * 2 1 3 5 5 C 1.34181 * 125.43434 * 65.32135 * 4 2 1 6 6 C 1.47019 * 105.94980 * 180.12201 * 5 4 2 7 7 C 1.47388 * 127.18719 * 179.88780 * 6 5 4 8 8 O 1.21605 * 119.99926 * 359.71407 * 7 6 5 9 9 N 1.34779 * 119.99508 * 179.70878 * 7 6 5 10 10 C 1.46494 * 119.99525 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.91148 * 23.75262 * 10 9 7 12 12 C 1.53786 * 113.61370 * 155.00031 * 10 9 7 13 13 C 1.53781 * 87.17350 * 140.02367 * 12 10 9 14 14 H 1.08999 * 113.61567 * 89.07405 * 13 12 10 15 15 C 1.50698 * 113.61793 * 219.97800 * 13 12 10 16 16 C 1.38239 * 119.99609 * 59.72284 * 15 13 12 17 17 C 1.38234 * 119.99832 * 179.79337 * 16 15 13 18 18 C 1.38240 * 119.99706 * 0.43997 * 17 16 15 19 19 C 1.38227 * 120.00342 * 359.81430 * 18 17 16 20 20 C 1.38229 * 120.00282 * 240.00600 * 15 13 12 21 21 C 1.53781 * 87.08070 * 334.52830 * 13 12 10 22 22 C 1.36410 * 105.61766 * 359.63074 * 6 5 4 23 23 O 1.33648 * 108.39878 * 0.22374 * 22 6 5 24 24 H 0.96701 * 114.00468 * 300.00176 * 1 2 3 25 25 H 1.08997 * 109.47359 * 239.99647 * 2 1 3 26 26 H 1.48505 * 109.99514 * 299.99545 * 3 2 1 27 27 H 1.48492 * 110.00422 * 61.31365 * 3 2 1 28 28 H 1.07997 * 127.02142 * 0.02562 * 5 4 2 29 29 H 0.97000 * 119.99938 * 0.02562 * 9 7 6 30 30 H 1.09002 * 113.61357 * 25.43283 * 12 10 9 31 31 H 1.09002 * 113.61608 * 254.61445 * 12 10 9 32 32 H 1.08004 * 120.00241 * 0.02562 * 16 15 13 33 33 H 1.07997 * 120.00147 * 180.27741 * 17 16 15 34 34 H 1.08001 * 119.99408 * 179.83446 * 18 17 16 35 35 H 1.07997 * 120.00451 * 179.97438 * 19 18 17 36 36 H 1.08005 * 120.00151 * 359.97197 * 20 15 13 37 37 H 1.09005 * 113.61471 * 139.98321 * 21 13 12 38 38 H 1.08996 * 113.61178 * 270.79663 * 21 13 12 39 39 H 1.08001 * 125.79860 * 180.22699 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 1.7602 -2.0134 1.5011 6 6 2.4126 -2.2459 2.7979 7 6 2.5014 -3.5192 3.5349 8 8 1.9949 -4.5245 3.0749 9 7 3.1439 -3.5692 4.7186 10 6 3.2326 -4.8349 5.4509 11 1 3.1302 -5.7069 4.8049 12 6 4.4372 -4.9122 6.4037 13 6 3.5031 -5.6111 7.4056 14 1 3.4744 -6.6949 7.2931 15 6 3.7134 -5.1749 8.8327 16 6 3.5485 -3.8473 9.1810 17 6 3.7372 -3.4479 10.4909 18 6 4.0998 -4.3745 11.4505 19 6 4.2698 -5.7010 11.1012 20 6 4.0769 -6.1012 9.7921 21 6 2.3403 -4.8882 6.7055 22 6 2.9237 -1.0382 3.1737 23 8 2.6260 -0.1416 2.2283 24 1 -0.3934 0.4417 0.7650 25 1 1.7924 -0.5139 -0.8899 26 1 1.5615 2.4678 -1.2086 27 1 1.5878 2.4587 1.2241 28 1 1.2467 -2.7420 0.8914 29 1 3.5476 -2.7672 5.0856 30 1 4.7897 -3.9378 6.7419 31 1 5.2422 -5.5503 6.0390 32 1 3.2685 -3.1228 8.4305 33 1 3.6040 -2.4116 10.7639 34 1 4.2498 -4.0619 12.4734 35 1 4.5535 -6.4249 11.8508 36 1 4.2098 -7.1377 9.5191 37 1 1.4514 -5.5073 6.5833 38 1 2.1185 -3.9079 7.1271 39 1 3.4752 -0.8403 4.0809 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16147626_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:24 Heat of formation + Delta-G solvation = 4.291367 kcal Electronic energy + Delta-G solvation = -22901.842047 eV Core-core repulsion = 19357.550329 eV Total energy + Delta-G solvation = -3544.291719 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.74308 -41.45296 -40.12186 -38.63768 -38.16736 -34.84938 -33.84285 -32.11841 -31.84256 -31.38386 -27.00488 -26.80646 -26.26523 -24.57337 -23.62061 -22.34993 -22.24635 -21.15552 -20.31663 -19.32367 -18.28748 -17.82492 -17.56102 -17.37303 -16.94335 -16.49611 -16.24328 -16.00414 -15.81831 -15.65367 -15.28504 -14.84499 -14.36053 -14.23380 -14.19218 -13.98873 -13.92596 -13.61880 -13.58727 -13.16480 -12.97589 -12.60706 -12.38606 -12.10209 -11.87929 -11.75013 -11.51312 -11.02595 -10.90467 -10.76507 -10.11173 -9.85587 -9.84034 -9.59157 -5.02639 0.20570 0.39351 0.46507 0.87476 1.09609 1.45116 1.68870 1.89647 2.06230 2.32600 2.79547 3.11255 3.32322 3.39127 3.54717 3.60942 3.64308 3.82559 3.89292 3.96811 4.06205 4.09723 4.20210 4.26858 4.36074 4.49889 4.54534 4.56311 4.58410 4.65982 4.72626 4.76896 4.88054 4.94080 5.03758 5.09741 5.16120 5.20267 5.47582 5.54006 5.60508 5.68623 5.80158 6.06359 6.20609 6.42604 7.19393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.520 6.520 2 C -0.035 4.035 3 Si 0.705 3.295 4 C -0.057 4.057 5 C -0.122 4.122 6 C -0.238 4.238 7 C 0.589 3.411 8 O -0.530 6.530 9 N -0.718 5.718 10 C 0.124 3.876 11 H 0.120 0.880 12 C -0.135 4.135 13 C -0.071 4.071 14 H 0.103 0.897 15 C -0.070 4.070 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.145 4.145 22 C 0.032 3.968 23 O -0.166 6.166 24 H 0.380 0.620 25 H 0.138 0.862 26 H -0.249 1.249 27 H -0.256 1.256 28 H 0.162 0.838 29 H 0.398 0.602 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.204 2.984 2.799 5.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.327 6.327 2 C -0.145 4.145 3 Si 0.603 3.397 4 C -0.105 4.105 5 C -0.142 4.142 6 C -0.242 4.242 7 C 0.376 3.624 8 O -0.407 6.407 9 N -0.368 5.368 10 C 0.019 3.981 11 H 0.137 0.863 12 C -0.173 4.173 13 C -0.090 4.090 14 H 0.121 0.879 15 C -0.070 4.070 16 C -0.136 4.136 17 C -0.136 4.136 18 C -0.142 4.142 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.184 4.184 22 C -0.039 4.039 23 O -0.062 6.062 24 H 0.229 0.771 25 H 0.156 0.844 26 H -0.173 1.173 27 H -0.180 1.180 28 H 0.180 0.820 29 H 0.232 0.768 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.766 3.080 1.876 5.215 hybrid contribution -0.842 -0.100 1.037 1.340 sum 2.924 2.980 2.913 5.091 Atomic orbital electron populations 1.86681 1.16646 1.80127 1.49215 1.24404 0.84034 1.12296 0.93739 0.94452 0.91268 0.73001 0.80938 1.22680 1.01844 0.93341 0.92641 1.22554 1.01050 0.95306 0.95281 1.21547 1.09167 0.94357 0.99150 1.17308 0.77785 0.87093 0.80174 1.90817 1.46310 1.35681 1.67895 1.45806 1.57486 1.12249 1.21302 1.22608 0.96393 0.87664 0.91417 0.86265 1.23455 0.96888 1.01745 0.95229 1.21324 0.97037 1.00389 0.90210 0.87854 1.19633 0.99207 0.93544 0.94590 1.20977 1.00795 0.95476 0.96361 1.21168 0.99534 0.99677 0.93227 1.21204 0.99901 0.93502 0.99609 1.21199 0.99740 0.96213 0.96366 1.21094 0.99830 0.99443 0.92989 1.23672 0.97734 1.01534 0.95441 1.24456 0.99477 0.86752 0.93213 1.83691 1.57179 1.38904 1.26418 0.77115 0.84444 1.17344 1.18007 0.82028 0.76754 0.89263 0.90147 0.86225 0.86049 0.86065 0.85969 0.85997 0.90464 0.89253 0.77026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.30 12.88 -35.23 -0.45 -0.75 16 2 C -0.04 0.03 2.97 36.01 0.11 0.14 16 3 Si 0.70 -1.12 32.09 -169.99 -5.46 -6.58 16 4 C -0.06 -0.01 6.18 -35.73 -0.22 -0.23 16 5 C -0.12 -0.22 10.90 -37.45 -0.41 -0.63 16 6 C -0.24 -0.24 6.31 -103.27 -0.65 -0.89 16 7 C 0.59 1.43 7.81 -12.54 -0.10 1.33 16 8 O -0.53 -3.60 16.58 5.27 0.09 -3.51 16 9 N -0.72 0.78 5.35 -53.97 -0.29 0.49 16 10 C 0.12 -0.10 4.25 -66.98 -0.28 -0.38 16 11 H 0.12 0.11 7.47 -51.93 -0.39 -0.27 16 12 C -0.14 0.31 7.29 -25.92 -0.19 0.12 16 13 C -0.07 0.10 3.98 -90.96 -0.36 -0.26 16 14 H 0.10 -0.18 8.10 -51.93 -0.42 -0.60 16 15 C -0.07 0.01 5.29 -104.63 -0.55 -0.54 16 16 C -0.12 0.05 8.60 -39.58 -0.34 -0.29 16 17 C -0.12 0.01 10.05 -39.58 -0.40 -0.39 16 18 C -0.12 -0.03 10.05 -39.58 -0.40 -0.42 16 19 C -0.12 -0.03 10.05 -39.58 -0.40 -0.43 16 20 C -0.12 -0.03 9.71 -39.58 -0.38 -0.41 16 21 C -0.15 0.15 7.27 -25.78 -0.19 -0.04 16 22 C 0.03 -0.06 11.61 30.07 0.35 0.29 16 23 O -0.17 0.10 8.90 7.67 0.07 0.17 16 24 H 0.38 -0.87 8.70 45.56 0.40 -0.48 16 25 H 0.14 -0.30 7.96 -51.93 -0.41 -0.71 16 26 H -0.25 -0.30 7.11 56.52 0.40 0.11 16 27 H -0.26 -0.23 7.11 56.52 0.40 0.18 16 28 H 0.16 0.38 8.06 -52.49 -0.42 -0.04 16 29 H 0.40 -1.71 7.70 -40.82 -0.31 -2.02 16 30 H 0.09 -0.27 7.69 -51.93 -0.40 -0.67 16 31 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 32 H 0.12 -0.25 6.68 -52.48 -0.35 -0.61 16 33 H 0.12 -0.21 8.06 -52.49 -0.42 -0.63 16 34 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 35 H 0.12 -0.15 8.06 -52.49 -0.42 -0.58 16 36 H 0.12 -0.14 8.06 -52.48 -0.42 -0.57 16 37 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.09 -0.13 6.32 -51.93 -0.33 -0.46 16 39 H 0.21 -1.40 7.47 -52.49 -0.39 -1.79 16 LS Contribution 336.99 15.07 5.08 5.08 Total: 0.00 -8.76 336.99 -10.15 -18.91 By element: Atomic # 1 Polarization: -5.99 SS G_CDS: -4.77 Total: -10.75 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -4.42 Total: -3.06 kcal Atomic # 7 Polarization: 0.78 SS G_CDS: -0.29 Total: 0.49 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.30 Total: -4.09 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: -5.46 Total: -6.58 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -8.76 -10.15 -18.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.202 kcal (2) G-P(sol) polarization free energy of solvation -8.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds