Wall clock time and date at job start Sun Mar 7 2021 08:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86306 * 109.47002 * 2 1 4 4 C 1.50706 * 109.46930 * 119.99142 * 2 1 3 5 5 C 1.34181 * 125.43434 * 65.32135 * 4 2 1 6 6 C 1.47019 * 105.94980 * 180.12201 * 5 4 2 7 7 C 1.47388 * 127.18719 * 179.88780 * 6 5 4 8 8 O 1.21605 * 119.99926 * 359.71407 * 7 6 5 9 9 N 1.34779 * 119.99508 * 179.70878 * 7 6 5 10 10 C 1.46494 * 119.99525 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.91148 * 23.75262 * 10 9 7 12 12 C 1.53786 * 113.61370 * 155.00031 * 10 9 7 13 13 C 1.53781 * 87.17350 * 140.02367 * 12 10 9 14 14 H 1.08999 * 113.61567 * 89.07405 * 13 12 10 15 15 C 1.50698 * 113.61793 * 219.97800 * 13 12 10 16 16 C 1.38239 * 119.99609 * 59.72284 * 15 13 12 17 17 C 1.38234 * 119.99832 * 179.79337 * 16 15 13 18 18 C 1.38240 * 119.99706 * 0.43997 * 17 16 15 19 19 C 1.38227 * 120.00342 * 359.81430 * 18 17 16 20 20 C 1.38229 * 120.00282 * 240.00600 * 15 13 12 21 21 C 1.53781 * 87.08070 * 334.52830 * 13 12 10 22 22 C 1.36410 * 105.61766 * 359.63074 * 6 5 4 23 23 O 1.33648 * 108.39878 * 0.22374 * 22 6 5 24 24 H 0.96701 * 114.00468 * 300.00176 * 1 2 3 25 25 H 1.08997 * 109.47359 * 239.99647 * 2 1 3 26 26 H 1.48505 * 109.99514 * 299.99545 * 3 2 1 27 27 H 1.48492 * 110.00422 * 61.31365 * 3 2 1 28 28 H 1.07997 * 127.02142 * 0.02562 * 5 4 2 29 29 H 0.97000 * 119.99938 * 0.02562 * 9 7 6 30 30 H 1.09002 * 113.61357 * 25.43283 * 12 10 9 31 31 H 1.09002 * 113.61608 * 254.61445 * 12 10 9 32 32 H 1.08004 * 120.00241 * 0.02562 * 16 15 13 33 33 H 1.07997 * 120.00147 * 180.27741 * 17 16 15 34 34 H 1.08001 * 119.99408 * 179.83446 * 18 17 16 35 35 H 1.07997 * 120.00451 * 179.97438 * 19 18 17 36 36 H 1.08005 * 120.00151 * 359.97197 * 20 15 13 37 37 H 1.09005 * 113.61471 * 139.98321 * 21 13 12 38 38 H 1.08996 * 113.61178 * 270.79663 * 21 13 12 39 39 H 1.08001 * 125.79860 * 180.22699 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 1.7602 -2.0134 1.5011 6 6 2.4126 -2.2459 2.7979 7 6 2.5014 -3.5192 3.5349 8 8 1.9949 -4.5245 3.0749 9 7 3.1439 -3.5692 4.7186 10 6 3.2326 -4.8349 5.4509 11 1 3.1302 -5.7069 4.8049 12 6 4.4372 -4.9122 6.4037 13 6 3.5031 -5.6111 7.4056 14 1 3.4744 -6.6949 7.2931 15 6 3.7134 -5.1749 8.8327 16 6 3.5485 -3.8473 9.1810 17 6 3.7372 -3.4479 10.4909 18 6 4.0998 -4.3745 11.4505 19 6 4.2698 -5.7010 11.1012 20 6 4.0769 -6.1012 9.7921 21 6 2.3403 -4.8882 6.7055 22 6 2.9237 -1.0382 3.1737 23 8 2.6260 -0.1416 2.2283 24 1 -0.3934 0.4417 0.7650 25 1 1.7924 -0.5139 -0.8899 26 1 1.5615 2.4678 -1.2086 27 1 1.5878 2.4587 1.2241 28 1 1.2467 -2.7420 0.8914 29 1 3.5476 -2.7672 5.0856 30 1 4.7897 -3.9378 6.7419 31 1 5.2422 -5.5503 6.0390 32 1 3.2685 -3.1228 8.4305 33 1 3.6040 -2.4116 10.7639 34 1 4.2498 -4.0619 12.4734 35 1 4.5535 -6.4249 11.8508 36 1 4.2098 -7.1377 9.5191 37 1 1.4514 -5.5073 6.5833 38 1 2.1185 -3.9079 7.1271 39 1 3.4752 -0.8403 4.0809 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:24 Heat of formation + Delta-G solvation = 5.947490 kcal Electronic energy + Delta-G solvation = -22901.770232 eV Core-core repulsion = 19357.550329 eV Total energy + Delta-G solvation = -3544.219904 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.71947 -41.42494 -40.18377 -38.63519 -38.15663 -34.94844 -33.84022 -32.08325 -31.77296 -31.33234 -26.98622 -26.69868 -26.21547 -24.55812 -23.55290 -22.35217 -22.21961 -21.18259 -20.24522 -19.28707 -18.23770 -17.78445 -17.53093 -17.41429 -16.89186 -16.45050 -16.21424 -16.04621 -15.75403 -15.64926 -15.28600 -14.89671 -14.28642 -14.23836 -14.17634 -13.99476 -13.91635 -13.59356 -13.44860 -13.13927 -12.95275 -12.53763 -12.30978 -12.13841 -11.81566 -11.67473 -11.46712 -11.16146 -10.97650 -10.75700 -10.14596 -9.80251 -9.79123 -9.53527 -4.91135 0.26097 0.44731 0.51911 0.81299 1.18195 1.53665 1.75980 1.96052 2.07222 2.23086 2.85301 3.21628 3.43727 3.50097 3.55401 3.68834 3.72853 3.92637 3.97701 4.06362 4.15149 4.18854 4.30448 4.34776 4.43817 4.51022 4.57867 4.63586 4.71057 4.74515 4.84145 4.89392 4.97246 5.02314 5.11082 5.12746 5.18152 5.22049 5.52195 5.60453 5.66317 5.75220 5.83140 6.14205 6.34477 6.48158 7.14744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.047 4.047 3 Si 0.793 3.207 4 C -0.050 4.050 5 C -0.151 4.151 6 C -0.270 4.270 7 C 0.586 3.414 8 O -0.588 6.588 9 N -0.698 5.698 10 C 0.119 3.881 11 H 0.096 0.904 12 C -0.120 4.120 13 C -0.068 4.068 14 H 0.103 0.897 15 C -0.076 4.076 16 C -0.124 4.124 17 C -0.128 4.128 18 C -0.139 4.139 19 C -0.131 4.131 20 C -0.131 4.131 21 C -0.142 4.142 22 C 0.067 3.933 23 O -0.165 6.165 24 H 0.390 0.610 25 H 0.148 0.852 26 H -0.289 1.289 27 H -0.285 1.285 28 H 0.143 0.857 29 H 0.417 0.583 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 4.604 3.836 8.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.154 4.154 3 Si 0.695 3.305 4 C -0.099 4.099 5 C -0.171 4.171 6 C -0.274 4.274 7 C 0.376 3.624 8 O -0.469 6.469 9 N -0.349 5.349 10 C 0.014 3.986 11 H 0.114 0.886 12 C -0.158 4.158 13 C -0.087 4.087 14 H 0.121 0.879 15 C -0.077 4.077 16 C -0.141 4.141 17 C -0.146 4.146 18 C -0.157 4.157 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.181 4.181 22 C -0.003 4.003 23 O -0.060 6.060 24 H 0.241 0.759 25 H 0.165 0.835 26 H -0.216 1.216 27 H -0.211 1.211 28 H 0.161 0.839 29 H 0.255 0.745 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 5.095 4.709 2.951 7.539 hybrid contribution -1.275 -0.592 0.751 1.594 sum 3.820 4.117 3.702 6.726 Atomic orbital electron populations 1.86651 1.17585 1.80587 1.50047 1.24733 0.83457 1.13415 0.93840 0.93442 0.89822 0.70180 0.77026 1.22683 1.01544 0.92685 0.92955 1.22574 1.02295 0.95947 0.96306 1.21490 1.11481 0.95051 0.99417 1.17578 0.77241 0.86881 0.80743 1.90785 1.49050 1.37617 1.69469 1.45642 1.56213 1.12992 1.20063 1.22548 0.97709 0.87103 0.91193 0.88585 1.23397 0.96075 1.02498 0.93827 1.21292 0.97072 1.00475 0.89867 0.87922 1.19786 0.99162 0.93817 0.94894 1.21226 1.00405 0.95706 0.96793 1.21447 0.99313 1.00467 0.93388 1.21455 1.00107 0.93672 1.00425 1.21419 1.00032 0.96716 0.96758 1.21317 1.00216 1.00113 0.93276 1.23657 0.97262 1.01841 0.95297 1.25315 0.96759 0.84975 0.93249 1.83722 1.56860 1.39015 1.26434 0.75948 0.83492 1.21589 1.21089 0.83906 0.74512 0.87597 0.89869 0.84371 0.84554 0.85058 0.85101 0.85295 0.91963 0.88243 0.72067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.00 12.88 -148.98 -1.92 -2.92 16 2 C -0.05 0.07 2.97 71.24 0.21 0.28 16 3 Si 0.79 -2.88 32.09 68.60 2.20 -0.68 16 4 C -0.05 -0.02 6.18 24.76 0.15 0.13 16 5 C -0.15 -0.76 10.90 23.65 0.26 -0.51 16 6 C -0.27 -0.56 6.31 -18.99 -0.12 -0.68 16 7 C 0.59 3.35 7.81 86.65 0.68 4.03 16 8 O -0.59 -9.56 16.58 -4.05 -0.07 -9.62 16 9 N -0.70 1.98 5.35 -442.91 -2.37 -0.39 16 10 C 0.12 -0.17 4.25 45.61 0.19 0.02 16 11 H 0.10 0.37 7.47 -2.39 -0.02 0.35 16 12 C -0.12 0.67 7.29 31.12 0.23 0.90 16 13 C -0.07 0.21 3.98 -11.01 -0.04 0.17 16 14 H 0.10 -0.31 8.10 -2.39 -0.02 -0.33 16 15 C -0.08 0.06 5.29 -19.87 -0.11 -0.04 16 16 C -0.12 0.25 8.60 22.27 0.19 0.44 16 17 C -0.13 0.15 10.05 22.27 0.22 0.37 16 18 C -0.14 -0.01 10.05 22.27 0.22 0.21 16 19 C -0.13 -0.08 10.05 22.27 0.22 0.14 16 20 C -0.13 -0.07 9.71 22.27 0.22 0.15 16 21 C -0.14 0.29 7.27 31.21 0.23 0.51 16 22 C 0.07 -0.42 11.61 67.39 0.78 0.36 16 23 O -0.16 0.48 8.90 4.52 0.04 0.52 16 24 H 0.39 -1.55 8.70 -74.06 -0.64 -2.20 16 25 H 0.15 -0.59 7.96 -2.39 -0.02 -0.61 16 26 H -0.29 -0.84 7.11 99.48 0.71 -0.13 16 27 H -0.28 -0.34 7.11 99.48 0.71 0.37 16 28 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 29 H 0.42 -4.61 7.70 -92.71 -0.71 -5.33 16 30 H 0.11 -0.91 7.69 -2.39 -0.02 -0.93 16 31 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.14 -0.91 6.68 -2.91 -0.02 -0.93 16 33 H 0.14 -0.67 8.06 -2.91 -0.02 -0.69 16 34 H 0.13 -0.39 8.06 -2.91 -0.02 -0.41 16 35 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 36 H 0.13 -0.25 8.06 -2.91 -0.02 -0.28 16 37 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 38 H 0.10 -0.41 6.32 -2.39 -0.02 -0.42 16 39 H 0.26 -4.67 7.47 -2.91 -0.02 -4.70 16 Total: 0.00 -23.65 336.99 1.19 -22.46 By element: Atomic # 1 Polarization: -15.62 SS G_CDS: -0.23 Total: -15.85 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 3.54 Total: 6.49 kcal Atomic # 7 Polarization: 1.98 SS G_CDS: -2.37 Total: -0.39 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.95 Total: -12.03 kcal Atomic # 14 Polarization: -2.88 SS G_CDS: 2.20 Total: -0.68 kcal Total: -23.65 1.19 -22.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.406 kcal (2) G-P(sol) polarization free energy of solvation -23.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds