Wall clock time and date at job start Sun Mar 7 2021 08:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37871 * 126.45648 * 2 1 4 4 C 1.46676 * 126.23440 * 359.92058 * 3 2 1 5 5 O 1.21688 * 119.99942 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99812 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99611 * 180.02562 * 6 4 3 8 8 H 1.09001 * 112.85028 * 336.19481 * 7 6 4 9 9 C 1.53779 * 113.61483 * 107.50299 * 7 6 4 10 10 C 1.53784 * 87.08045 * 139.98067 * 9 7 6 11 11 H 1.08994 * 113.61477 * 89.11454 * 10 9 7 12 12 C 1.50702 * 113.61439 * 220.02212 * 10 9 7 13 13 C 1.38236 * 120.00018 * 37.22101 * 12 10 9 14 14 C 1.38236 * 120.00013 * 179.79389 * 13 12 10 15 15 C 1.38238 * 119.99625 * 0.45867 * 14 13 12 16 16 C 1.38232 * 120.00166 * 359.77514 * 15 14 13 17 17 C 1.38229 * 119.99955 * 217.50020 * 12 10 9 18 18 C 1.53779 * 113.61085 * 205.00218 * 7 6 4 19 19 N 1.37659 * 107.53309 * 180.19293 * 3 2 1 20 20 C 1.35535 * 108.64194 * 359.61697 * 19 3 2 21 21 C 1.50703 * 125.55988 * 180.18306 * 20 19 3 22 22 O 1.42903 * 109.47004 * 65.26251 * 21 20 19 23 23 Si 1.86302 * 109.46690 * 185.25691 * 21 20 19 24 24 C 1.35446 * 108.87336 * 0.38667 * 20 19 3 25 25 H 1.09001 * 109.47040 * 90.00677 * 1 2 3 26 26 H 1.09005 * 109.47228 * 210.00172 * 1 2 3 27 27 H 1.08993 * 109.47041 * 330.00573 * 1 2 3 28 28 H 0.96998 * 120.00342 * 0.02562 * 6 4 3 29 29 H 1.09002 * 113.61557 * 25.43179 * 9 7 6 30 30 H 1.09004 * 113.61501 * 254.52599 * 9 7 6 31 31 H 1.07999 * 119.99949 * 0.02562 * 13 12 10 32 32 H 1.07993 * 120.00208 * 180.25616 * 14 13 12 33 33 H 1.07999 * 119.99616 * 179.79128 * 15 14 13 34 34 H 1.07995 * 120.00226 * 180.02562 * 16 15 14 35 35 H 1.08006 * 120.00046 * 359.97401 * 17 12 10 36 36 H 1.08997 * 113.61646 * 105.47219 * 18 7 6 37 37 H 1.08998 * 113.69354 * 334.57527 * 18 7 6 38 38 H 0.96999 * 125.67737 * 179.74728 * 19 3 2 39 39 H 1.08993 * 109.47448 * 305.25643 * 21 20 19 40 40 H 0.96696 * 113.99949 * 59.98793 * 22 21 20 41 41 H 1.48501 * 110.00432 * 58.68443 * 23 21 20 42 42 H 1.48501 * 110.00072 * 180.02562 * 23 21 20 43 43 H 1.07997 * 126.06950 * 179.78119 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3262 1.1089 0.0000 4 6 1.8898 2.5092 -0.0016 5 8 0.7026 2.7766 -0.0027 6 7 2.8037 3.4999 -0.0020 7 6 2.3678 4.8986 -0.0030 8 1 1.3646 5.0289 -0.4089 9 6 2.5886 5.6136 1.3404 10 6 3.0208 6.8437 0.5249 11 1 2.1959 7.5068 0.2644 12 6 4.1983 7.5760 1.1152 13 6 5.2227 6.8678 1.7150 14 6 6.3048 7.5393 2.2528 15 6 6.3578 8.9196 2.1991 16 6 5.3310 9.6281 1.6036 17 6 4.2510 8.9563 1.0621 18 6 3.4039 5.8662 -0.5988 19 7 3.6284 0.6625 -0.0044 20 6 3.6217 -0.6928 0.0015 21 6 4.8434 -1.5752 0.0032 22 8 5.5617 -1.3918 1.2249 23 14 4.3223 -3.3574 -0.1491 24 6 2.3380 -1.1247 0.0009 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 3.7500 3.2868 -0.0015 29 1 3.3913 5.1819 1.9381 30 1 1.6715 5.7672 1.9092 31 1 5.1795 5.7896 1.7602 32 1 7.1071 6.9858 2.7177 33 1 7.2015 9.4444 2.6222 34 1 5.3726 10.7064 1.5613 35 1 3.4486 9.5099 0.5971 36 1 3.1450 6.2236 -1.5955 37 1 4.4300 5.5046 -0.5321 38 1 4.4190 1.2244 -0.0089 39 1 5.4839 -1.3108 -0.8381 40 1 5.0518 -1.6086 2.0174 41 1 3.5469 -3.5548 -1.4001 42 1 5.5180 -4.2381 -0.1479 43 1 2.0137 -2.1548 0.0015 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_13940406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:26 Heat of formation + Delta-G solvation = 26.104202 kcal Electronic energy + Delta-G solvation = -25053.384391 eV Core-core repulsion = 21452.219591 eV Total energy + Delta-G solvation = -3601.164800 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.61789 -41.36171 -40.07216 -38.67495 -37.68062 -35.02538 -33.47243 -32.07209 -31.79697 -31.28152 -28.22123 -27.29914 -26.75848 -25.64187 -23.64258 -23.08519 -22.04394 -21.49813 -20.94160 -20.08693 -19.41543 -18.22190 -18.03066 -17.08170 -16.75010 -16.51549 -16.31079 -15.99010 -15.77644 -15.47316 -15.29449 -15.09921 -14.71800 -14.39387 -14.28718 -14.17637 -14.04224 -13.87334 -13.61901 -13.53507 -13.51379 -13.16308 -12.97148 -12.57122 -12.35168 -12.18891 -12.00145 -11.84760 -11.70260 -11.49891 -11.06925 -10.65295 -10.22876 -9.84168 -9.82693 -9.58119 -9.20459 -4.91477 0.28614 0.40818 0.47776 1.23072 1.52148 1.72509 1.91227 2.02300 2.22046 2.23079 2.81122 3.40228 3.47206 3.57345 3.62919 3.68109 3.78510 3.89513 4.01996 4.11141 4.13539 4.16229 4.22223 4.27069 4.41756 4.52476 4.59172 4.65076 4.68285 4.71947 4.78411 4.81157 4.90006 4.92508 4.97147 5.05565 5.12838 5.16322 5.17839 5.34899 5.45615 5.56413 5.62105 5.63214 5.71418 5.85252 6.10111 6.29651 6.46431 6.67610 7.05230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.086 4.086 3 C -0.071 4.071 4 C 0.588 3.412 5 O -0.562 6.562 6 N -0.708 5.708 7 C 0.122 3.878 8 H 0.103 0.897 9 C -0.141 4.141 10 C -0.066 4.066 11 H 0.107 0.893 12 C -0.077 4.077 13 C -0.126 4.126 14 C -0.129 4.129 15 C -0.138 4.138 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.124 4.124 19 N -0.514 5.514 20 C 0.033 3.967 21 C -0.054 4.054 22 O -0.554 6.554 23 Si 0.803 3.197 24 C -0.207 4.207 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.407 0.593 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.427 0.573 39 H 0.116 0.884 40 H 0.399 0.601 41 H -0.287 1.287 42 H -0.294 1.294 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -0.991 1.533 3.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.185 4.185 4 C 0.377 3.623 5 O -0.441 6.441 6 N -0.359 5.359 7 C 0.017 3.983 8 H 0.121 0.879 9 C -0.179 4.179 10 C -0.085 4.085 11 H 0.125 0.875 12 C -0.077 4.077 13 C -0.143 4.143 14 C -0.147 4.147 15 C -0.156 4.156 16 C -0.148 4.148 17 C -0.148 4.148 18 C -0.162 4.162 19 N -0.112 5.112 20 C -0.086 4.086 21 C -0.164 4.164 22 O -0.362 6.362 23 Si 0.707 3.293 24 C -0.231 4.231 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.243 0.757 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.266 0.734 39 H 0.133 0.867 40 H 0.249 0.751 41 H -0.213 1.213 42 H -0.222 1.222 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.061 -1.173 0.656 3.343 hybrid contribution 0.953 1.030 -0.323 1.440 sum 4.013 -0.143 0.333 4.030 Atomic orbital electron populations 1.20340 0.89162 1.03074 1.02186 1.20187 0.96334 0.91329 1.01619 1.20168 0.84501 0.93161 1.20637 1.17254 0.85697 0.83768 0.75623 1.90812 1.17566 1.83770 1.51933 1.45773 1.09463 1.05756 1.74888 1.22537 0.99739 0.78447 0.97564 0.87862 1.23590 1.02276 0.95298 0.96764 1.21302 0.95936 0.94854 0.96415 0.87494 1.19791 0.95824 0.93662 0.98439 1.21194 0.93896 1.00537 0.98705 1.21433 0.98725 0.94834 0.99721 1.21459 0.99409 0.94813 0.99885 1.21437 0.94283 1.00869 0.98203 1.21329 0.98998 0.94179 1.00250 1.23402 0.99433 0.94537 0.98857 1.41823 1.06779 1.06778 1.55771 1.21308 0.97097 0.83352 1.06819 1.25032 0.91621 1.09197 0.90522 1.86476 1.42632 1.91224 1.15844 0.92971 0.79605 0.71021 0.85708 1.20846 0.90761 0.99564 1.11903 0.91728 0.89855 0.92033 0.75656 0.88753 0.91372 0.84910 0.84730 0.84949 0.84887 0.85046 0.89841 0.88389 0.73387 0.86668 0.75053 1.21337 1.22200 0.81368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 9.83 71.23 0.70 0.28 16 2 C -0.09 -0.40 6.21 -19.56 -0.12 -0.52 16 3 C -0.07 -0.27 7.06 40.35 0.28 0.01 16 4 C 0.59 3.54 7.79 86.45 0.67 4.21 16 5 O -0.56 -7.60 14.40 -4.31 -0.06 -7.66 16 6 N -0.71 0.66 5.35 -444.00 -2.38 -1.72 16 7 C 0.12 -0.09 4.24 45.52 0.19 0.11 16 8 H 0.10 0.34 7.46 -2.39 -0.02 0.33 16 9 C -0.14 0.20 7.25 31.12 0.23 0.42 16 10 C -0.07 0.16 3.98 -11.01 -0.04 0.11 16 11 H 0.11 -0.33 8.10 -2.39 -0.02 -0.35 16 12 C -0.08 -0.01 5.29 -19.87 -0.11 -0.12 16 13 C -0.13 0.06 8.62 22.27 0.19 0.25 16 14 C -0.13 -0.02 10.05 22.27 0.22 0.20 16 15 C -0.14 -0.12 10.05 22.27 0.22 0.11 16 16 C -0.13 -0.14 10.05 22.27 0.22 0.08 16 17 C -0.13 -0.13 9.71 22.27 0.22 0.09 16 18 C -0.12 0.50 7.30 31.12 0.23 0.73 16 19 N -0.51 1.02 5.99 -171.93 -1.03 -0.01 16 20 C 0.03 -0.07 6.46 41.34 0.27 0.20 16 21 C -0.05 0.24 3.08 71.24 0.22 0.46 16 22 O -0.55 2.40 12.88 -148.98 -1.92 0.48 16 23 Si 0.80 -4.03 30.56 68.60 2.10 -1.93 16 24 C -0.21 0.02 9.27 22.01 0.20 0.23 16 25 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.08 0.03 8.14 -2.38 -0.02 0.01 16 27 H 0.06 0.55 6.49 -2.39 -0.02 0.53 16 28 H 0.41 -2.73 7.86 -92.71 -0.73 -3.46 16 29 H 0.09 -0.24 6.30 -2.39 -0.02 -0.26 16 30 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.13 -0.55 6.64 -2.91 -0.02 -0.57 16 32 H 0.13 -0.45 8.06 -2.91 -0.02 -0.47 16 33 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 34 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 35 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 36 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.10 -0.57 7.71 -2.39 -0.02 -0.59 16 38 H 0.43 -3.02 8.19 -92.71 -0.76 -3.78 16 39 H 0.12 -0.52 7.96 -2.39 -0.02 -0.54 16 40 H 0.40 -4.54 8.70 -74.06 -0.64 -5.19 16 41 H -0.29 -0.23 7.11 99.48 0.71 0.47 16 42 H -0.29 -0.59 7.11 99.48 0.71 0.12 16 43 H 0.17 -0.80 6.19 -2.91 -0.02 -0.82 16 Total: 0.00 -18.94 356.01 -0.52 -19.46 By element: Atomic # 1 Polarization: -14.45 SS G_CDS: -1.03 Total: -15.49 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 3.80 Total: 6.87 kcal Atomic # 7 Polarization: 1.68 SS G_CDS: -3.41 Total: -1.73 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -1.98 Total: -7.18 kcal Atomic # 14 Polarization: -4.03 SS G_CDS: 2.10 Total: -1.93 kcal Total: -18.94 -0.52 -19.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_13940406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.561 kcal (2) G-P(sol) polarization free energy of solvation -18.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds