Wall clock time and date at job start Sun Mar 7 2021 08:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.34851 * 125.88567 * 245.02290 * 4 2 1 6 6 C 1.40896 * 107.41347 * 180.02562 * 5 4 2 7 7 C 1.34852 * 107.41486 * 359.97438 * 6 5 4 8 8 C 1.50698 * 125.88776 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46832 * 84.98083 * 8 7 6 10 10 O 1.21278 * 120.00012 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00375 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00717 * 179.97438 * 11 9 8 13 13 H 1.09002 * 112.84913 * 336.19761 * 12 11 9 14 14 C 1.53783 * 113.61404 * 107.49873 * 12 11 9 15 15 C 1.53780 * 87.07836 * 139.98490 * 14 12 11 16 16 H 1.09007 * 113.61257 * 89.12262 * 15 14 12 17 17 C 1.50705 * 113.69227 * 220.00706 * 15 14 12 18 18 C 1.38229 * 119.99479 * 37.26488 * 17 15 14 19 19 C 1.38241 * 119.99691 * 179.74238 * 18 17 15 20 20 C 1.38243 * 119.99884 * 0.53360 * 19 18 17 21 21 C 1.38230 * 119.99787 * 359.74302 * 20 19 18 22 22 C 1.38233 * 119.99920 * 217.53820 * 17 15 14 23 23 C 1.53778 * 113.61829 * 205.00075 * 12 11 9 24 24 N 1.36336 * 108.22107 * 359.74112 * 7 6 5 25 25 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 26 26 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 27 27 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 28 28 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 29 29 H 1.07995 * 126.29625 * 0.02562 * 5 4 2 30 30 H 1.07994 * 126.29310 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47402 * 204.97514 * 8 7 6 32 32 H 1.09004 * 109.47569 * 324.98476 * 8 7 6 33 33 H 0.97007 * 119.99874 * 359.97438 * 11 9 8 34 34 H 1.08995 * 113.61711 * 254.53216 * 14 12 11 35 35 H 1.08998 * 113.61354 * 25.43885 * 14 12 11 36 36 H 1.07999 * 120.00746 * 359.97438 * 18 17 15 37 37 H 1.07998 * 120.00262 * 180.29520 * 19 18 17 38 38 H 1.08000 * 119.99530 * 179.76578 * 20 19 18 39 39 H 1.07995 * 119.99952 * 180.02562 * 21 20 19 40 40 H 1.07992 * 120.00499 * 0.02562 * 22 17 15 41 41 H 1.09002 * 113.61504 * 334.56713 * 23 12 11 42 42 H 1.09001 * 113.61484 * 105.47219 * 23 12 11 43 43 H 0.97008 * 125.64208 * 180.26309 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6296 -0.1484 2.2381 6 6 2.8977 -1.1604 3.1811 7 6 2.3524 -2.3019 2.7141 8 6 2.3930 -3.6444 3.3975 9 6 1.2615 -3.7381 4.3884 10 8 0.4976 -2.8063 4.5264 11 7 1.0989 -4.8570 5.1220 12 6 -0.0007 -4.9479 6.0857 13 1 -0.3490 -3.9719 6.4238 14 6 -1.1335 -5.8880 5.6409 15 6 -1.2078 -6.3616 7.1020 16 1 -1.8875 -5.7726 7.7179 17 6 -1.4241 -7.8460 7.2472 18 6 -0.8158 -8.7223 6.3681 19 6 -1.0099 -10.0842 6.5045 20 6 -1.8213 -10.5690 7.5133 21 6 -2.4342 -9.6924 8.3888 22 6 -2.2355 -8.3308 8.2560 23 6 0.2648 -5.9381 7.2318 24 7 1.7525 -2.0306 1.5203 25 1 -0.3934 0.4418 0.7650 26 1 1.7924 -0.5139 -0.8899 27 1 3.5346 1.7702 0.0322 28 1 1.5616 2.4678 -1.2086 29 1 2.9285 0.8869 2.3091 30 1 3.4401 -1.0433 4.1075 31 1 2.2905 -4.4343 2.6533 32 1 3.3433 -3.7580 3.9194 33 1 1.7101 -5.6022 5.0119 34 1 -2.0288 -5.3647 5.3054 35 1 -0.8100 -6.6634 4.9465 36 1 -0.1857 -8.3433 5.5771 37 1 -0.5308 -10.7691 5.8207 38 1 -1.9760 -11.6328 7.6175 39 1 -3.0678 -10.0711 9.1771 40 1 -2.7146 -7.6459 8.9398 41 1 0.9706 -6.7273 6.9724 42 1 0.4983 -5.4553 8.1808 43 1 1.2793 -2.6716 0.9668 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:28 Heat of formation + Delta-G solvation = 28.007398 kcal Electronic energy + Delta-G solvation = -24542.537082 eV Core-core repulsion = 20941.454811 eV Total energy + Delta-G solvation = -3601.082271 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.32926 -41.38336 -40.17610 -38.65590 -37.68866 -34.71350 -33.07691 -31.92773 -31.83443 -31.56082 -29.38452 -26.70004 -26.16986 -24.96679 -23.58453 -22.64872 -21.70033 -21.35134 -21.06239 -20.30688 -18.91852 -18.19643 -18.03165 -17.18226 -16.80551 -16.43142 -16.30569 -16.19434 -15.77876 -15.36037 -15.22420 -15.05226 -14.60931 -14.32765 -14.25316 -14.19482 -14.07555 -13.88895 -13.88052 -13.56487 -13.44847 -13.10896 -12.70815 -12.51848 -12.29811 -12.10357 -11.99375 -11.79702 -11.65162 -11.44482 -10.89513 -10.63666 -10.02882 -9.81304 -9.79126 -9.54451 -8.95679 -4.93399 0.43530 0.50508 1.11602 1.29090 1.63062 1.68637 1.89905 1.91853 2.34156 2.52759 2.84193 3.47827 3.50654 3.68063 3.70359 3.73506 3.81479 3.92786 4.02292 4.07898 4.15374 4.21296 4.21797 4.29926 4.36937 4.49864 4.56579 4.62296 4.63298 4.71606 4.75009 4.80564 4.83893 4.97938 5.02310 5.11632 5.18121 5.24831 5.26488 5.29816 5.57841 5.59674 5.65023 5.74446 6.00695 6.12974 6.14301 6.55575 6.64819 6.67925 7.28870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.055 4.055 3 Si 0.802 3.198 4 C -0.023 4.023 5 C -0.201 4.201 6 C -0.201 4.201 7 C 0.032 3.968 8 C -0.068 4.068 9 C 0.511 3.489 10 O -0.575 6.575 11 N -0.708 5.708 12 C 0.122 3.878 13 H 0.095 0.905 14 C -0.141 4.141 15 C -0.070 4.070 16 H 0.102 0.898 17 C -0.077 4.077 18 C -0.124 4.124 19 C -0.129 4.129 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.132 4.132 23 C -0.122 4.122 24 N -0.538 5.538 25 H 0.395 0.605 26 H 0.107 0.893 27 H -0.284 1.284 28 H -0.293 1.293 29 H 0.154 0.846 30 H 0.141 0.859 31 H 0.126 0.874 32 H 0.143 0.857 33 H 0.418 0.582 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -4.249 2.224 5.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.164 4.164 3 Si 0.706 3.294 4 C -0.136 4.136 5 C -0.226 4.226 6 C -0.225 4.225 7 C -0.082 4.082 8 C -0.108 4.108 9 C 0.298 3.702 10 O -0.454 6.454 11 N -0.360 5.360 12 C 0.017 3.983 13 H 0.113 0.887 14 C -0.180 4.180 15 C -0.088 4.088 16 H 0.120 0.880 17 C -0.077 4.077 18 C -0.142 4.142 19 C -0.147 4.147 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.149 4.149 23 C -0.160 4.160 24 N -0.133 5.133 25 H 0.245 0.755 26 H 0.124 0.876 27 H -0.211 1.211 28 H -0.221 1.221 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.144 0.856 32 H 0.161 0.839 33 H 0.255 0.745 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.120 0.880 42 H 0.099 0.901 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 2.360 -3.411 1.262 4.336 hybrid contribution -0.163 -1.291 -0.351 1.348 sum 2.197 -4.703 0.911 5.270 Atomic orbital electron populations 1.86430 1.17656 1.82278 1.50514 1.24985 0.84855 1.11476 0.95098 0.92910 0.77751 0.74397 0.84357 1.20999 1.07433 0.84888 1.00274 1.20927 1.05882 1.00260 0.95526 1.20859 1.07791 0.92381 1.01470 1.19941 1.02450 0.97016 0.88777 1.20263 0.99386 0.93622 0.97553 1.21028 0.85756 0.81891 0.81498 1.90747 1.47204 1.39193 1.68237 1.45873 1.32051 1.17927 1.40136 1.22394 0.87539 0.98663 0.89739 0.88743 1.23584 0.98897 0.99136 0.96362 1.21312 0.98158 0.91636 0.97734 0.88017 1.19803 0.97219 0.95046 0.95601 1.21216 1.00390 0.93109 0.99482 1.21446 0.98703 0.95977 0.98529 1.21455 0.97787 1.00600 0.95803 1.21424 1.00028 0.93657 0.99767 1.21321 0.99051 0.95929 0.98645 1.23385 0.95856 0.98250 0.98532 1.41900 1.43600 1.09371 1.18448 0.75516 0.87602 1.21097 1.22092 0.82881 0.84097 0.85552 0.83915 0.74487 0.92060 0.88451 0.84539 0.84623 0.85020 0.85036 0.85262 0.87986 0.90098 0.74498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.77 12.88 -148.98 -1.92 -3.69 16 2 C -0.05 -0.11 3.08 71.24 0.22 0.11 16 3 Si 0.80 -0.10 30.60 68.60 2.10 2.00 16 4 C -0.02 -0.09 6.50 41.08 0.27 0.18 16 5 C -0.20 -0.93 9.37 22.14 0.21 -0.72 16 6 C -0.20 -1.03 10.77 22.14 0.24 -0.79 16 7 C 0.03 0.09 5.66 41.08 0.23 0.32 16 8 C -0.07 0.32 6.24 29.10 0.18 0.50 16 9 C 0.51 0.52 7.82 87.66 0.69 1.20 16 10 O -0.58 -6.70 15.63 -3.02 -0.05 -6.74 16 11 N -0.71 3.31 5.35 -440.05 -2.36 0.95 16 12 C 0.12 -0.26 4.24 45.52 0.19 -0.07 16 13 H 0.09 0.29 7.46 -2.39 -0.02 0.27 16 14 C -0.14 0.32 7.25 31.12 0.23 0.54 16 15 C -0.07 0.19 3.98 -11.01 -0.04 0.15 16 16 H 0.10 -0.28 8.09 -2.38 -0.02 -0.30 16 17 C -0.08 0.03 5.29 -19.87 -0.11 -0.08 16 18 C -0.12 0.17 8.63 22.27 0.19 0.36 16 19 C -0.13 0.07 10.05 22.27 0.22 0.30 16 20 C -0.14 -0.06 10.05 22.27 0.22 0.16 16 21 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 22 C -0.13 -0.11 9.71 22.27 0.22 0.10 16 23 C -0.12 0.63 7.30 31.12 0.23 0.85 16 24 N -0.54 -1.61 6.07 -171.12 -1.04 -2.65 16 25 H 0.39 -1.23 8.70 -74.06 -0.64 -1.87 16 26 H 0.11 0.21 7.96 -2.39 -0.02 0.19 16 27 H -0.28 -1.36 7.11 99.48 0.71 -0.65 16 28 H -0.29 -1.78 7.11 99.48 0.71 -1.08 16 29 H 0.15 0.10 6.24 -2.91 -0.02 0.09 16 30 H 0.14 0.42 8.06 -2.91 -0.02 0.39 16 31 H 0.13 -1.29 8.14 -2.39 -0.02 -1.31 16 32 H 0.14 -1.40 8.14 -2.38 -0.02 -1.42 16 33 H 0.42 -4.76 8.73 -92.70 -0.81 -5.57 16 34 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.10 -0.40 6.31 -2.39 -0.02 -0.41 16 36 H 0.14 -0.76 6.65 -2.91 -0.02 -0.78 16 37 H 0.14 -0.58 8.06 -2.91 -0.02 -0.60 16 38 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 39 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 40 H 0.13 -0.22 8.05 -2.91 -0.02 -0.24 16 41 H 0.10 -0.76 7.71 -2.39 -0.02 -0.78 16 42 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.42 -0.11 8.96 -92.70 -0.83 -0.94 16 Total: 0.00 -22.11 360.39 -0.85 -22.96 By element: Atomic # 1 Polarization: -14.86 SS G_CDS: -1.19 Total: -16.05 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 3.61 Total: 3.23 kcal Atomic # 7 Polarization: 1.70 SS G_CDS: -3.40 Total: -1.70 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -1.97 Total: -10.44 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: 2.10 Total: 2.00 kcal Total: -22.11 -0.85 -22.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.967 kcal (2) G-P(sol) polarization free energy of solvation -22.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds