Wall clock time and date at job start Sun Mar 7 2021 08:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86299 * 109.47234 * 2 1 4 4 C 1.50702 * 109.46733 * 240.00465 * 2 1 3 5 5 C 1.31112 * 118.54741 * 119.98062 * 4 2 1 6 6 N 1.38966 * 121.87304 * 179.68169 * 5 4 2 7 7 C 1.47034 * 118.85702 * 13.17916 * 6 5 4 8 8 C 1.50696 * 109.82392 * 196.87846 * 7 6 5 9 9 O 1.21282 * 120.00080 * 19.13438 * 8 7 6 10 10 N 1.34769 * 120.00187 * 199.13736 * 8 7 6 11 11 C 1.46497 * 120.00237 * 179.97438 * 10 8 7 12 12 H 1.09002 * 112.84869 * 23.80211 * 11 10 8 13 13 C 1.53783 * 113.61583 * 154.99708 * 11 10 8 14 14 C 1.53782 * 87.08052 * 140.06279 * 13 11 10 15 15 H 1.09007 * 113.61417 * 89.20333 * 14 13 11 16 16 C 1.50701 * 113.61710 * 220.01937 * 14 13 11 17 17 C 1.38235 * 119.99808 * 238.47299 * 16 14 13 18 18 C 1.38243 * 119.99602 * 179.97438 * 17 16 14 19 19 C 1.38231 * 120.00070 * 0.07188 * 18 17 16 20 20 C 1.38234 * 119.99892 * 359.90902 * 19 18 17 21 21 C 1.38230 * 119.99865 * 58.45045 * 16 14 13 22 22 C 1.53779 * 87.17356 * 334.61081 * 14 13 11 23 23 C 1.53548 * 107.71054 * 316.44974 * 7 6 5 24 24 C 1.50205 * 118.54613 * 299.99932 * 4 2 1 25 25 H 0.96696 * 113.99512 * 59.99603 * 1 2 3 26 26 H 1.08997 * 109.47080 * 120.00442 * 2 1 3 27 27 H 1.48505 * 109.99819 * 60.00416 * 3 2 1 28 28 H 1.48501 * 109.99889 * 181.31891 * 3 2 1 29 29 H 1.07996 * 119.07722 * 359.59112 * 5 4 2 30 30 H 0.96998 * 120.58768 * 193.28688 * 6 5 4 31 31 H 1.08996 * 109.81868 * 76.01622 * 7 6 5 32 32 H 0.97003 * 119.99839 * 359.97438 * 10 8 7 33 33 H 1.09003 * 113.61329 * 25.52107 * 13 11 10 34 34 H 1.08993 * 113.69355 * 254.62431 * 13 11 10 35 35 H 1.08000 * 120.00616 * 359.70324 * 17 16 14 36 36 H 1.08001 * 119.99556 * 179.97438 * 18 17 16 37 37 H 1.07997 * 119.99650 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.99751 * 180.02562 * 20 19 18 39 39 H 1.08001 * 120.00371 * 0.02562 * 21 16 14 40 40 H 1.09005 * 113.61212 * 139.93895 * 22 14 13 41 41 H 1.08997 * 113.61549 * 270.83529 * 22 14 13 42 42 H 1.09001 * 109.62246 * 180.64110 * 23 7 6 43 43 H 1.08998 * 109.61668 * 301.19421 * 23 7 6 44 44 H 1.08996 * 109.33108 * 79.77425 * 24 4 2 45 45 H 1.09006 * 109.19004 * 320.20091 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.6828 -0.0458 -2.0748 6 7 3.1884 -0.6344 -3.2276 7 6 2.6445 -1.9302 -3.6600 8 6 3.5807 -2.5723 -4.6511 9 8 4.7361 -2.2095 -4.7169 10 7 3.1340 -3.5498 -5.4643 11 6 4.0440 -4.1737 -6.4281 12 1 5.0912 -4.0877 -6.1384 13 6 3.6314 -5.5992 -6.8313 14 6 4.0527 -5.2315 -8.2639 15 1 5.1021 -5.4361 -8.4765 16 6 3.1254 -5.7697 -9.3229 17 6 3.6133 -6.6082 -10.3075 18 6 2.7625 -7.1023 -11.2787 19 6 1.4242 -6.7566 -11.2659 20 6 0.9362 -5.9184 -10.2810 21 6 1.7868 -5.4251 -9.3093 22 6 3.7746 -3.7665 -7.8882 23 6 2.5130 -2.8202 -2.4158 24 6 1.5485 -2.1482 -1.4358 25 1 -0.3932 0.4417 -0.7650 26 1 1.7924 -0.5139 0.8899 27 1 1.5617 2.4678 1.2086 28 1 3.5347 1.7702 -0.0321 29 1 2.9143 0.9889 -1.8694 30 1 3.8893 -0.1989 -3.7376 31 1 1.6653 -1.7861 -4.1165 32 1 2.2100 -3.8402 -5.4115 33 1 2.5635 -5.7909 -6.7260 34 1 4.2475 -6.3774 -6.3811 35 1 4.6601 -6.8739 -10.3208 36 1 3.1439 -7.7571 -12.0482 37 1 0.7597 -7.1423 -12.0249 38 1 -0.1095 -5.6486 -10.2708 39 1 1.4055 -4.7699 -8.5400 40 1 4.5073 -3.0662 -8.2895 41 1 2.7461 -3.4562 -8.0724 42 1 2.1217 -3.7961 -2.7035 43 1 3.4893 -2.9384 -1.9456 44 1 0.5355 -2.1985 -1.8350 45 1 1.5856 -2.6690 -0.4789 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:30 Heat of formation + Delta-G solvation = 5.769235 kcal Electronic energy + Delta-G solvation = -25499.172994 eV Core-core repulsion = 21869.814925 eV Total energy + Delta-G solvation = -3629.358069 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.68431 -40.78679 -39.55778 -38.61388 -37.29620 -34.88308 -33.16462 -32.97081 -31.82065 -31.53338 -27.79217 -26.70169 -25.89311 -25.20872 -23.77012 -23.53600 -22.45666 -21.65731 -20.42076 -19.31844 -18.97158 -18.17755 -17.94210 -17.18243 -16.72285 -16.49333 -16.32163 -16.08412 -15.78217 -15.66727 -15.29160 -15.18429 -15.04300 -14.51800 -14.28554 -14.22319 -14.09311 -13.99479 -13.88611 -13.45038 -13.12275 -12.99818 -12.90618 -12.54132 -12.29742 -12.21229 -11.94332 -11.86574 -11.79040 -11.65304 -11.45235 -11.23756 -10.83386 -10.15507 -10.10910 -9.79948 -9.53498 -8.44231 -5.00396 0.44661 0.51901 1.32163 1.41505 1.47801 1.62619 1.93220 2.00037 2.65477 2.85285 3.45416 3.53600 3.67528 3.69306 3.74400 3.83042 3.88524 3.94572 4.05366 4.06448 4.15624 4.19678 4.31059 4.33765 4.46631 4.55844 4.63003 4.63718 4.65614 4.70117 4.74319 4.78548 4.83793 4.97471 5.01786 5.02238 5.11494 5.18325 5.22235 5.24410 5.30550 5.52168 5.58278 5.60550 5.66423 5.75137 6.14285 6.26039 6.47881 6.81777 6.96472 7.12165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.045 4.045 3 Si 0.759 3.241 4 C -0.288 4.288 5 C 0.141 3.859 6 N -0.738 5.738 7 C 0.140 3.860 8 C 0.513 3.487 9 O -0.576 6.576 10 N -0.699 5.699 11 C 0.121 3.879 12 H 0.096 0.904 13 C -0.123 4.123 14 C -0.069 4.069 15 H 0.102 0.898 16 C -0.077 4.077 17 C -0.132 4.132 18 C -0.132 4.132 19 C -0.139 4.139 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.139 4.139 23 C -0.123 4.123 24 C -0.050 4.050 25 H 0.392 0.608 26 H 0.089 0.911 27 H -0.307 1.307 28 H -0.295 1.295 29 H 0.142 0.858 30 H 0.407 0.593 31 H 0.118 0.882 32 H 0.419 0.581 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.448 -1.646 -4.547 6.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.157 4.157 3 Si 0.668 3.332 4 C -0.298 4.298 5 C 0.020 3.980 6 N -0.371 5.371 7 C 0.031 3.969 8 C 0.299 3.701 9 O -0.455 6.455 10 N -0.351 5.351 11 C 0.016 3.984 12 H 0.114 0.886 13 C -0.161 4.161 14 C -0.088 4.088 15 H 0.120 0.880 16 C -0.077 4.077 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.146 4.146 21 C -0.141 4.141 22 C -0.178 4.178 23 C -0.161 4.161 24 C -0.087 4.087 25 H 0.242 0.758 26 H 0.107 0.893 27 H -0.236 1.236 28 H -0.223 1.223 29 H 0.159 0.841 30 H 0.243 0.757 31 H 0.136 0.864 32 H 0.257 0.743 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.140 -1.231 -3.670 4.984 hybrid contribution 0.412 -0.522 0.089 0.670 sum -2.729 -1.752 -3.581 4.831 Atomic orbital electron populations 1.86429 1.18002 1.82073 1.50476 1.24731 0.84810 1.08695 0.97461 0.94221 0.77358 0.76691 0.84934 1.20996 1.11581 0.97820 0.99396 1.20482 0.95002 0.96045 0.86472 1.44404 1.43881 1.21073 1.27708 1.21122 0.96545 0.85184 0.94062 1.20943 0.88242 0.79923 0.80975 1.90722 1.20361 1.63708 1.70756 1.45814 1.15197 1.37268 1.36790 1.22496 0.94996 0.93552 0.87397 0.88576 1.23400 1.03277 0.95453 0.93990 1.21308 0.98907 0.95912 0.92694 0.88006 1.19798 0.94433 0.97348 0.96112 1.21320 1.00456 0.98089 0.95118 1.21420 0.94144 1.00251 0.99132 1.21452 0.96010 0.98736 0.99455 1.21449 1.00716 0.97514 0.94943 1.21218 0.92953 1.00426 0.99493 1.23607 1.03204 0.95913 0.95032 1.21848 1.00487 0.99031 0.94780 1.19912 0.98728 0.91441 0.98604 0.75808 0.89317 1.23558 1.22294 0.84108 0.75711 0.86428 0.74323 0.87853 0.90122 0.85331 0.85131 0.85070 0.84568 0.84390 0.91699 0.88289 0.88101 0.93068 0.89996 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.46 12.78 -148.98 -1.90 -2.37 16 2 C -0.05 -0.03 2.83 71.24 0.20 0.17 16 3 Si 0.76 -0.32 29.68 68.60 2.04 1.72 16 4 C -0.29 0.11 5.44 -16.75 -0.09 0.02 16 5 C 0.14 -0.15 9.63 83.41 0.80 0.65 16 6 N -0.74 0.30 5.47 -328.96 -1.80 -1.50 16 7 C 0.14 -0.46 3.36 44.33 0.15 -0.31 16 8 C 0.51 0.17 7.09 87.66 0.62 0.79 16 9 O -0.58 -5.55 15.68 -3.04 -0.05 -5.59 16 10 N -0.70 3.82 5.36 -439.77 -2.36 1.46 16 11 C 0.12 -0.41 4.24 45.58 0.19 -0.21 16 12 H 0.10 0.15 7.46 -2.39 -0.02 0.13 16 13 C -0.12 0.75 7.30 31.12 0.23 0.98 16 14 C -0.07 0.27 3.98 -11.01 -0.04 0.22 16 15 H 0.10 -0.39 8.09 -2.38 -0.02 -0.40 16 16 C -0.08 0.09 5.29 -19.87 -0.11 -0.02 16 17 C -0.13 -0.04 9.71 22.27 0.22 0.18 16 18 C -0.13 -0.06 10.05 22.27 0.22 0.16 16 19 C -0.14 0.00 10.05 22.27 0.22 0.23 16 20 C -0.13 0.16 10.05 22.27 0.22 0.38 16 21 C -0.12 0.28 8.54 22.27 0.19 0.47 16 22 C -0.14 0.51 7.27 31.18 0.23 0.74 16 23 C -0.12 0.36 5.47 30.79 0.17 0.53 16 24 C -0.05 0.08 5.75 29.71 0.17 0.25 16 25 H 0.39 -3.00 8.70 -74.06 -0.64 -3.65 16 26 H 0.09 0.30 7.96 -2.39 -0.02 0.28 16 27 H -0.31 -2.39 7.11 99.48 0.71 -1.68 16 28 H -0.30 -1.49 7.10 99.48 0.71 -0.79 16 29 H 0.14 -0.54 4.37 -2.91 -0.01 -0.56 16 30 H 0.41 0.33 8.10 -92.71 -0.75 -0.42 16 31 H 0.12 -0.98 8.14 -2.39 -0.02 -1.00 16 32 H 0.42 -4.95 8.73 -92.71 -0.81 -5.76 16 33 H 0.10 -0.87 7.62 -2.39 -0.02 -0.89 16 34 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.13 -0.28 8.05 -2.91 -0.02 -0.31 16 36 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 37 H 0.13 -0.40 8.06 -2.91 -0.02 -0.42 16 38 H 0.14 -0.67 8.06 -2.91 -0.02 -0.69 16 39 H 0.14 -0.93 6.73 -2.91 -0.02 -0.95 16 40 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 41 H 0.10 -0.54 6.40 -2.39 -0.02 -0.56 16 42 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 45 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 Total: 0.00 -18.97 362.57 -1.62 -20.59 By element: Atomic # 1 Polarization: -18.40 SS G_CDS: -1.14 Total: -19.54 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 3.60 Total: 5.23 kcal Atomic # 7 Polarization: 4.12 SS G_CDS: -4.16 Total: -0.04 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -1.95 Total: -7.96 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: 2.04 Total: 1.72 kcal Total: -18.97 -1.62 -20.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.360 kcal (2) G-P(sol) polarization free energy of solvation -18.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds