Wall clock time and date at job start Sun Mar 7 2021 08:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.47464 * 2 1 4 4 C 1.50699 * 109.47117 * 120.00408 * 2 1 3 5 5 C 1.31112 * 118.54586 * 250.01545 * 4 2 1 6 6 N 1.38930 * 121.84691 * 180.40366 * 5 4 2 7 7 C 1.47017 * 119.01344 * 346.84251 * 6 5 4 8 8 C 1.53544 * 107.67144 * 43.32658 * 7 6 5 9 9 C 1.50211 * 118.54543 * 69.99560 * 4 2 1 10 10 C 1.50705 * 109.32956 * 39.69073 * 9 4 2 11 11 O 1.21278 * 119.99975 * 120.85651 * 10 9 4 12 12 N 1.34771 * 119.99643 * 300.85983 * 10 9 4 13 13 C 1.46498 * 119.99930 * 179.97438 * 12 10 9 14 14 H 1.09006 * 112.85080 * 336.20219 * 13 12 10 15 15 C 1.53787 * 113.61405 * 107.50296 * 13 12 10 16 16 C 1.53776 * 87.08221 * 139.98327 * 15 13 12 17 17 H 1.09002 * 113.68857 * 89.12828 * 16 15 13 18 18 C 1.50698 * 113.61578 * 220.01670 * 16 15 13 19 19 C 1.38241 * 119.99545 * 37.22943 * 18 16 15 20 20 C 1.38238 * 119.99749 * 179.80862 * 19 18 16 21 21 C 1.38244 * 119.99816 * 0.41659 * 20 19 18 22 22 C 1.38234 * 119.99969 * 359.81315 * 21 20 19 23 23 C 1.38230 * 120.00492 * 217.49757 * 18 16 15 24 24 C 1.53780 * 87.08314 * 334.56809 * 16 15 13 25 25 H 0.96703 * 113.99993 * 59.99368 * 1 2 3 26 26 H 1.09001 * 109.46558 * 240.00317 * 2 1 3 27 27 H 1.48497 * 110.00184 * 298.68531 * 3 2 1 28 28 H 1.48506 * 109.99515 * 60.00398 * 3 2 1 29 29 H 1.08000 * 119.07812 * 0.38754 * 5 4 2 30 30 H 0.97001 * 120.55447 * 166.70827 * 6 5 4 31 31 H 1.08995 * 109.64899 * 283.87932 * 7 6 5 32 32 H 1.09001 * 109.97935 * 162.96259 * 7 6 5 33 33 H 1.09002 * 109.62230 * 179.52993 * 8 7 6 34 34 H 1.09001 * 109.62032 * 59.15918 * 8 7 6 35 35 H 1.08989 * 109.18893 * 280.11714 * 9 4 2 36 36 H 0.97003 * 120.00746 * 359.97438 * 12 10 9 37 37 H 1.09001 * 113.61397 * 254.53273 * 15 13 12 38 38 H 1.09000 * 113.61251 * 25.43657 * 15 13 12 39 39 H 1.07997 * 120.00375 * 359.97438 * 19 18 16 40 40 H 1.07998 * 120.00250 * 180.20643 * 20 19 18 41 41 H 1.08000 * 119.99933 * 179.78875 * 21 20 19 42 42 H 1.07996 * 119.99856 * 179.97438 * 22 21 20 43 43 H 1.08008 * 119.99949 * 359.97438 * 23 18 16 44 44 H 1.08993 * 113.61684 * 270.88481 * 24 16 15 45 45 H 1.09007 * 113.69116 * 139.98916 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.5113 -0.0029 2.1696 6 7 3.0068 -0.5883 3.3280 7 6 2.6275 -1.9727 3.6458 8 6 2.7177 -2.7901 2.3492 9 6 1.7450 -2.1979 1.3267 10 6 1.9987 -2.8208 -0.0219 11 8 2.8701 -3.6543 -0.1506 12 7 1.2571 -2.4514 -1.0849 13 6 1.5040 -3.0564 -2.3961 14 1 2.5160 -3.4486 -2.4975 15 6 0.4112 -4.0462 -2.8334 16 6 0.5543 -3.4579 -4.2470 17 1 1.3058 -3.9602 -4.8563 18 6 -0.7595 -3.2836 -4.9642 19 6 -1.8821 -2.8848 -4.2630 20 6 -3.0864 -2.7210 -4.9216 21 6 -3.1701 -2.9644 -6.2799 22 6 -2.0486 -3.3678 -6.9801 23 6 -0.8434 -3.5278 -6.3222 24 6 1.0648 -2.1723 -3.5752 25 1 -0.3933 0.4418 -0.7650 26 1 1.7922 -0.5138 -0.8900 27 1 1.5880 2.4586 -1.2241 28 1 1.5616 2.4678 1.2086 29 1 2.6068 1.0649 2.0389 30 1 3.5958 -0.0925 3.9180 31 1 1.6063 -1.9948 4.0264 32 1 3.3092 -2.3841 4.3902 33 1 2.4500 -3.8273 2.5509 34 1 3.7338 -2.7438 1.9573 35 1 0.7220 -2.4115 1.6362 36 1 0.5598 -1.7849 -0.9820 37 1 0.7144 -5.0908 -2.7624 38 1 -0.5598 -3.8542 -2.3769 39 1 -1.8177 -2.6986 -3.2011 40 1 -3.9627 -2.4063 -4.3744 41 1 -4.1118 -2.8397 -6.7938 42 1 -2.1141 -3.5583 -8.0411 43 1 0.0328 -3.8431 -6.8694 44 1 0.2726 -1.4681 -3.3214 45 1 1.8956 -1.7029 -4.1021 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_15608500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:33 Heat of formation + Delta-G solvation = 19.392451 kcal Electronic energy + Delta-G solvation = -26772.420950 eV Core-core repulsion = 23143.653628 eV Total energy + Delta-G solvation = -3628.767322 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.82488 -40.80738 -39.35974 -38.55353 -37.76339 -34.75133 -33.40493 -32.80530 -31.84415 -31.53846 -27.50347 -26.73029 -26.45434 -25.16051 -23.58473 -23.17946 -22.48375 -21.63822 -20.40679 -19.11266 -18.69306 -18.56126 -18.21658 -17.78746 -17.16824 -16.49509 -16.44411 -15.91208 -15.73812 -15.44106 -15.12724 -15.04221 -14.73442 -14.60094 -14.35317 -14.23086 -14.02033 -13.83121 -13.69425 -13.61635 -13.47274 -13.06994 -12.85015 -12.54005 -12.30201 -12.27834 -11.83155 -11.74693 -11.70777 -11.63577 -11.46535 -11.36740 -10.74575 -10.47310 -9.83755 -9.81301 -9.55110 -8.45228 -4.90176 0.42352 0.49408 1.22136 1.33299 1.58594 1.69771 1.93639 2.30881 2.64600 2.82976 3.43861 3.50103 3.61248 3.68869 3.73008 3.84193 3.91195 3.99639 4.05391 4.13523 4.16898 4.22882 4.25164 4.28896 4.39283 4.52562 4.55913 4.61663 4.64397 4.69478 4.73474 4.80948 4.81704 4.85578 4.97440 5.00175 5.10724 5.16804 5.20121 5.25478 5.28144 5.44586 5.57837 5.59200 5.63827 5.73876 6.11828 6.30787 6.54087 6.65352 6.96154 7.26282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.077 4.077 3 Si 0.739 3.261 4 C -0.257 4.257 5 C 0.158 3.842 6 N -0.744 5.744 7 C 0.122 3.878 8 C -0.119 4.119 9 C -0.037 4.037 10 C 0.525 3.475 11 O -0.580 6.580 12 N -0.710 5.710 13 C 0.115 3.885 14 H 0.102 0.898 15 C -0.144 4.144 16 C -0.066 4.066 17 H 0.108 0.892 18 C -0.076 4.076 19 C -0.126 4.126 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.125 4.125 25 H 0.389 0.611 26 H 0.084 0.916 27 H -0.288 1.288 28 H -0.290 1.290 29 H 0.145 0.855 30 H 0.415 0.585 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.415 0.585 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.095 0.905 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 3.351 0.446 3.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.188 4.188 3 Si 0.646 3.354 4 C -0.268 4.268 5 C 0.034 3.966 6 N -0.374 5.374 7 C -0.003 4.003 8 C -0.158 4.158 9 C -0.058 4.058 10 C 0.313 3.687 11 O -0.460 6.460 12 N -0.365 5.365 13 C 0.010 3.990 14 H 0.120 0.880 15 C -0.183 4.183 16 C -0.085 4.085 17 H 0.126 0.874 18 C -0.076 4.076 19 C -0.144 4.144 20 C -0.147 4.147 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.163 4.163 25 H 0.239 0.761 26 H 0.102 0.898 27 H -0.216 1.216 28 H -0.217 1.217 29 H 0.162 0.838 30 H 0.251 0.749 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.256 0.744 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.114 0.886 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.743 3.163 0.947 3.384 hybrid contribution -1.464 0.155 -0.453 1.540 sum -0.721 3.318 0.494 3.431 Atomic orbital electron populations 1.86593 1.18910 1.79953 1.50746 1.25003 0.83809 1.10775 0.99173 0.94252 0.91177 0.73313 0.76691 1.19566 1.15601 0.92876 0.98733 1.20614 0.93054 0.96752 0.86140 1.44632 1.54217 1.14622 1.23953 1.21679 1.01268 0.81241 0.96100 1.21694 0.99425 0.99494 0.95137 1.19678 1.01278 0.93023 0.91814 1.20890 0.80218 0.80663 0.86916 1.90668 1.34442 1.34896 1.86006 1.46486 1.38004 1.43929 1.08108 1.22532 0.99586 0.95251 0.81670 0.88002 1.23592 0.99785 0.99542 0.95341 1.21307 0.94498 0.97981 0.94667 0.87417 1.19795 0.94972 0.98991 0.93847 1.21190 0.92545 1.00243 1.00385 1.21423 0.98337 0.99942 0.95012 1.21452 0.99302 0.99888 0.94919 1.21437 0.93049 0.99445 1.00837 1.21327 0.98507 1.00501 0.94356 1.23404 1.01786 0.96304 0.94813 0.76147 0.89823 1.21566 1.21731 0.83810 0.74905 0.91952 0.87821 0.90500 0.91661 0.88822 0.74376 0.91635 0.89158 0.85159 0.84836 0.84955 0.84833 0.84959 0.88615 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.96 11.38 -148.98 -1.70 -0.73 16 2 C -0.08 0.11 1.68 71.24 0.12 0.23 16 3 Si 0.74 -1.89 29.92 68.60 2.05 0.16 16 4 C -0.26 -0.33 5.07 -16.75 -0.08 -0.42 16 5 C 0.16 -0.13 9.62 83.42 0.80 0.68 16 6 N -0.74 2.31 5.82 -345.92 -2.01 0.30 16 7 C 0.12 -0.34 7.17 86.46 0.62 0.28 16 8 C -0.12 -0.27 4.90 30.79 0.15 -0.12 16 9 C -0.04 -0.13 2.75 -12.42 -0.03 -0.16 16 10 C 0.53 3.63 6.85 87.66 0.60 4.23 16 11 O -0.58 -8.34 15.40 -3.02 -0.05 -8.38 16 12 N -0.71 -1.23 3.66 -440.03 -1.61 -2.83 16 13 C 0.11 0.11 4.24 45.52 0.19 0.30 16 14 H 0.10 0.46 7.46 -2.38 -0.02 0.45 16 15 C -0.14 -0.08 7.25 31.12 0.23 0.15 16 16 C -0.07 0.09 3.98 -11.02 -0.04 0.04 16 17 H 0.11 -0.25 8.09 -2.39 -0.02 -0.27 16 18 C -0.08 -0.08 5.29 -19.87 -0.11 -0.18 16 19 C -0.13 -0.10 8.63 22.27 0.19 0.09 16 20 C -0.13 -0.14 10.05 22.27 0.22 0.08 16 21 C -0.14 -0.20 10.05 22.27 0.22 0.02 16 22 C -0.13 -0.20 10.05 22.27 0.22 0.03 16 23 C -0.13 -0.19 9.71 22.27 0.22 0.03 16 24 C -0.13 0.39 7.30 31.12 0.23 0.62 16 25 H 0.39 -3.47 8.74 -74.06 -0.65 -4.12 16 26 H 0.08 -0.18 5.29 -2.39 -0.01 -0.19 16 27 H -0.29 -0.55 7.11 99.48 0.71 0.15 16 28 H -0.29 -0.88 6.88 99.48 0.68 -0.19 16 29 H 0.15 -0.52 4.34 -2.91 -0.01 -0.53 16 30 H 0.41 -3.15 8.96 -92.71 -0.83 -3.98 16 31 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 33 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.06 0.39 7.76 -2.39 -0.02 0.37 16 35 H 0.09 0.31 8.14 -2.39 -0.02 0.30 16 36 H 0.41 -0.53 5.25 -92.71 -0.49 -1.02 16 37 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.09 0.01 6.30 -2.39 -0.02 0.00 16 39 H 0.13 -0.27 6.64 -2.91 -0.02 -0.29 16 40 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 41 H 0.13 -0.24 8.06 -2.91 -0.02 -0.26 16 42 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 43 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 44 H 0.10 -0.46 7.71 -2.39 -0.02 -0.48 16 45 H 0.09 -0.38 8.14 -2.38 -0.02 -0.40 16 Total: 0.00 -16.93 352.35 -0.48 -17.41 By element: Atomic # 1 Polarization: -10.91 SS G_CDS: -0.92 Total: -11.83 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 3.75 Total: 5.91 kcal Atomic # 7 Polarization: 1.09 SS G_CDS: -3.62 Total: -2.54 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -1.74 Total: -9.12 kcal Atomic # 14 Polarization: -1.89 SS G_CDS: 2.05 Total: 0.16 kcal Total: -16.93 -0.48 -17.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_15608500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.805 kcal (2) G-P(sol) polarization free energy of solvation -16.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds