Wall clock time and date at job start Sun Mar 7 2021 08:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86300 * 109.47127 * 2 1 4 4 C 1.50704 * 109.46621 * 119.99775 * 2 1 3 5 5 C 1.34491 * 125.48759 * 209.99836 * 4 2 1 6 6 C 1.46756 * 106.35950 * 180.21219 * 5 4 2 7 7 C 1.47270 * 126.96589 * 179.78248 * 6 5 4 8 8 O 1.21628 * 119.99459 * 179.81428 * 7 6 5 9 9 N 1.34773 * 120.00192 * 359.82291 * 7 6 5 10 10 C 1.46498 * 119.99949 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.84835 * 336.18865 * 10 9 7 12 12 C 1.53778 * 113.61767 * 107.49708 * 10 9 7 13 13 C 1.53778 * 87.08302 * 139.98160 * 12 10 9 14 14 H 1.08999 * 113.61824 * 89.11891 * 13 12 10 15 15 C 1.50698 * 113.69301 * 220.01068 * 13 12 10 16 16 C 1.38236 * 119.99635 * 37.25870 * 15 13 12 17 17 C 1.38237 * 119.99466 * 179.79024 * 16 15 13 18 18 C 1.38234 * 120.00313 * 0.46274 * 17 16 15 19 19 C 1.38232 * 120.00150 * 359.77081 * 18 17 16 20 20 C 1.38232 * 119.99960 * 217.53533 * 15 13 12 21 21 C 1.53781 * 113.61280 * 204.99709 * 10 9 7 22 22 C 1.36329 * 106.06148 * 359.63256 * 6 5 4 23 23 C 1.51006 * 126.79233 * 180.11905 * 22 6 5 24 24 C 1.53388 * 108.25477 * 164.63597 * 23 22 6 25 25 C 1.53166 * 109.04648 * 48.46129 * 24 23 22 26 26 C 1.53135 * 109.52207 * 290.42804 * 25 24 23 27 27 N 1.35207 * 108.66141 * 0.38849 * 22 6 5 28 28 H 0.96710 * 113.99673 * 60.00132 * 1 2 3 29 29 H 1.08995 * 109.46639 * 239.99797 * 2 1 3 30 30 H 1.48504 * 109.99806 * 298.67958 * 3 2 1 31 31 H 1.48493 * 110.00125 * 59.99711 * 3 2 1 32 32 H 1.07995 * 126.82360 * 359.95206 * 5 4 2 33 33 H 0.96999 * 120.00219 * 359.97438 * 9 7 6 34 34 H 1.08997 * 113.61535 * 254.53172 * 12 10 9 35 35 H 1.08996 * 113.61413 * 25.43348 * 12 10 9 36 36 H 1.07995 * 120.00505 * 0.02562 * 16 15 13 37 37 H 1.08009 * 119.99905 * 180.25110 * 17 16 15 38 38 H 1.08007 * 120.00274 * 179.79098 * 18 17 16 39 39 H 1.07998 * 120.00519 * 180.02562 * 19 18 17 40 40 H 1.07997 * 120.00414 * 359.97438 * 20 15 13 41 41 H 1.08995 * 113.61650 * 334.56214 * 21 10 9 42 42 H 1.08996 * 113.61213 * 105.47115 * 21 10 9 43 43 H 1.09002 * 109.70372 * 284.32930 * 23 22 6 44 44 H 1.09005 * 109.70610 * 44.94621 * 23 22 6 45 45 H 1.09001 * 109.54356 * 168.32574 * 24 23 22 46 46 H 1.08992 * 109.54423 * 288.50274 * 24 23 22 47 47 H 1.09005 * 109.45989 * 50.44015 * 25 24 23 48 48 H 1.09001 * 109.46279 * 170.41258 * 25 24 23 49 49 H 1.08998 * 109.56514 * 170.83648 * 26 25 24 50 50 H 1.09004 * 109.56215 * 291.17769 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 3.0856 -0.4463 1.8681 6 6 3.1575 -1.3809 2.9972 7 6 4.2386 -1.4871 3.9916 8 8 4.1659 -2.3112 4.8832 9 7 5.3084 -0.6710 3.9137 10 6 6.3835 -0.7763 4.9032 11 1 6.0517 -1.2164 5.8435 12 6 7.6726 -1.4045 4.3478 13 6 8.4434 -0.3587 5.1706 14 1 8.6760 -0.6854 6.1841 15 6 9.6370 0.2167 4.4529 16 6 9.5760 0.4570 3.0930 17 6 10.6695 0.9888 2.4354 18 6 11.8272 1.2714 3.1360 19 6 11.8898 1.0266 4.4950 20 6 10.7948 0.4988 5.1534 21 6 7.1866 0.5231 5.0808 22 6 2.0189 -2.1287 2.9410 23 6 1.6148 -3.2335 3.8877 24 6 0.1223 -3.5208 3.6817 25 6 -0.1556 -3.6712 2.1829 26 6 -0.0048 -2.3112 1.4955 27 7 1.2884 -1.7250 1.8772 28 1 -0.3933 0.4417 -0.7652 29 1 1.7923 -0.5139 -0.8900 30 1 1.5879 2.4585 -1.2243 31 1 1.5615 2.4679 1.2084 32 1 3.8167 0.3019 1.5998 33 1 5.3664 -0.0140 3.2025 34 1 7.8372 -2.4294 4.6802 35 1 7.7881 -1.2841 3.2707 36 1 8.6729 0.2327 2.5449 37 1 10.6205 1.1804 1.3736 38 1 12.6827 1.6838 2.6216 39 1 12.7941 1.2478 5.0425 40 1 10.8439 0.3073 6.2152 41 1 7.1692 1.1704 4.2040 42 1 6.9589 1.0542 6.0049 43 1 2.1949 -4.1312 3.6738 44 1 1.7900 -2.9185 4.9164 45 1 -0.1460 -4.4434 4.1965 46 1 -0.4665 -2.6956 4.0819 47 1 0.5539 -4.3771 1.7511 48 1 -1.1704 -4.0413 2.0371 49 1 -0.0409 -2.4428 0.4141 50 1 -0.8123 -1.6508 1.8117 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:35 Heat of formation + Delta-G solvation = 26.481205 kcal Electronic energy + Delta-G solvation = -30890.593121 eV Core-core repulsion = 26850.143290 eV Total energy + Delta-G solvation = -4040.449830 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.74191 -41.27176 -39.95829 -38.52971 -37.99287 -36.89078 -34.55438 -33.52372 -31.80474 -31.57690 -31.19814 -29.46678 -26.80749 -26.62176 -25.88769 -24.53996 -23.92576 -23.46572 -22.13351 -21.63775 -21.14318 -20.33435 -19.34657 -18.55700 -18.20564 -18.05109 -16.97794 -16.88832 -16.48495 -16.31437 -15.98594 -15.74607 -15.70561 -15.33535 -15.22506 -15.15244 -15.05208 -14.66424 -14.34541 -14.25330 -14.19645 -14.07049 -13.89829 -13.79795 -13.37110 -13.18528 -13.02851 -12.89600 -12.47441 -12.44512 -12.24642 -12.17237 -12.03128 -11.88318 -11.80512 -11.72113 -11.57618 -11.36861 -10.83544 -10.72700 -9.99603 -9.74861 -9.55169 -9.46951 -8.99377 -4.90888 0.49706 0.56988 0.73862 1.05133 1.49741 1.63465 1.83503 2.05366 2.48070 2.55769 2.90703 3.12693 3.53537 3.55451 3.59055 3.72378 3.77853 3.80766 3.82358 3.83561 4.00345 4.10807 4.15161 4.22177 4.27608 4.32600 4.35862 4.36347 4.38356 4.44630 4.62580 4.63121 4.69181 4.75178 4.76728 4.78200 4.81978 4.83887 4.90361 4.94648 4.99486 5.05968 5.09032 5.16311 5.18542 5.19635 5.25274 5.34691 5.65284 5.67842 5.71101 5.76532 5.81723 6.08820 6.19353 6.22982 6.52578 6.73963 7.41036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.057 4.057 3 Si 0.794 3.206 4 C 0.019 3.981 5 C -0.165 4.165 6 C -0.255 4.255 7 C 0.590 3.410 8 O -0.590 6.590 9 N -0.703 5.703 10 C 0.122 3.878 11 H 0.095 0.905 12 C -0.140 4.140 13 C -0.067 4.067 14 H 0.102 0.898 15 C -0.076 4.076 16 C -0.123 4.123 17 C -0.127 4.127 18 C -0.139 4.139 19 C -0.132 4.132 20 C -0.132 4.132 21 C -0.123 4.123 22 C 0.097 3.903 23 C -0.052 4.052 24 C -0.125 4.125 25 C -0.134 4.134 26 C 0.112 3.888 27 N -0.429 5.429 28 H 0.400 0.600 29 H 0.101 0.899 30 H -0.279 1.279 31 H -0.309 1.309 32 H 0.186 0.814 33 H 0.414 0.586 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.107 0.893 49 H 0.100 0.900 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 2.118 -5.991 6.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.165 4.165 3 Si 0.697 3.303 4 C -0.090 4.090 5 C -0.188 4.188 6 C -0.264 4.264 7 C 0.381 3.619 8 O -0.473 6.473 9 N -0.353 5.353 10 C 0.016 3.984 11 H 0.113 0.887 12 C -0.178 4.178 13 C -0.086 4.086 14 H 0.120 0.880 15 C -0.076 4.076 16 C -0.141 4.141 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.150 4.150 20 C -0.150 4.150 21 C -0.161 4.161 22 C -0.022 4.022 23 C -0.090 4.090 24 C -0.162 4.162 25 C -0.172 4.172 26 C -0.008 4.008 27 N -0.104 5.104 28 H 0.251 0.749 29 H 0.118 0.882 30 H -0.205 1.205 31 H -0.237 1.237 32 H 0.203 0.797 33 H 0.251 0.749 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.121 0.879 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.125 0.875 49 H 0.118 0.882 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.313 1.950 -4.983 5.360 hybrid contribution -1.035 0.065 -0.513 1.157 sum -1.348 2.016 -5.496 6.007 Atomic orbital electron populations 1.86499 1.18098 1.80757 1.51542 1.24694 0.84233 1.11572 0.96019 0.93654 0.90017 0.70359 0.76256 1.20058 0.95444 0.94795 0.98703 1.21935 0.98603 1.02738 0.95571 1.19976 0.98005 1.05985 1.02472 1.17562 0.81428 0.79885 0.83072 1.90731 1.80278 1.38638 1.37634 1.45609 1.19663 1.38337 1.31707 1.22439 0.85047 0.98141 0.92729 0.88684 1.23584 0.94522 0.98596 1.01119 1.21292 0.91228 0.96668 0.99438 0.87991 1.19796 0.94832 0.98840 0.94162 1.21244 0.99438 0.99409 0.94002 1.21450 0.93330 0.98817 1.00909 1.21451 0.98885 1.00594 0.94746 1.21412 0.99047 0.99314 0.95208 1.21307 0.93246 0.99889 1.00548 1.23403 0.92976 0.95749 1.03968 1.20601 0.91984 0.98616 0.90959 1.20425 0.96772 0.94676 0.97149 1.21698 0.94593 1.03305 0.96635 1.21946 1.04631 0.95387 0.95188 1.22141 0.82125 0.94965 1.01542 1.44027 1.17874 1.27347 1.21184 0.74884 0.88156 1.20510 1.23724 0.79726 0.74850 0.91893 0.88369 0.84401 0.84444 0.85024 0.85129 0.85370 0.87875 0.90203 0.89953 0.90174 0.89059 0.91862 0.90924 0.87452 0.88221 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.27 10.65 -148.98 -1.59 -0.32 16 2 C -0.06 0.19 2.98 71.24 0.21 0.40 16 3 Si 0.79 -3.61 31.11 68.60 2.13 -1.48 16 4 C 0.02 0.05 6.18 40.99 0.25 0.30 16 5 C -0.17 -0.21 9.09 23.64 0.21 0.01 16 6 C -0.25 -1.89 6.28 -19.12 -0.12 -2.01 16 7 C 0.59 5.45 7.81 86.62 0.68 6.13 16 8 O -0.59 -9.75 14.94 -4.12 -0.06 -9.82 16 9 N -0.70 -1.23 5.35 -443.45 -2.37 -3.61 16 10 C 0.12 0.17 4.24 45.52 0.19 0.36 16 11 H 0.10 0.58 7.46 -2.39 -0.02 0.56 16 12 C -0.14 -0.01 7.25 31.12 0.23 0.22 16 13 C -0.07 0.08 3.98 -11.01 -0.04 0.03 16 14 H 0.10 -0.14 8.09 -2.39 -0.02 -0.16 16 15 C -0.08 -0.06 5.29 -19.87 -0.11 -0.16 16 16 C -0.12 0.06 8.63 22.27 0.19 0.25 16 17 C -0.13 0.01 10.05 22.27 0.22 0.24 16 18 C -0.14 -0.13 10.05 22.27 0.22 0.09 16 19 C -0.13 -0.21 10.05 22.27 0.22 0.01 16 20 C -0.13 -0.23 9.71 22.27 0.22 -0.01 16 21 C -0.12 0.32 7.30 31.12 0.23 0.55 16 22 C 0.10 0.75 6.57 41.69 0.27 1.03 16 23 C -0.05 -0.32 5.31 30.08 0.16 -0.16 16 24 C -0.12 -0.09 5.98 30.78 0.18 0.10 16 25 C -0.13 0.26 5.92 30.69 0.18 0.45 16 26 C 0.11 0.04 5.32 86.32 0.46 0.50 16 27 N -0.43 -2.01 3.11 -493.60 -1.54 -3.54 16 28 H 0.40 -4.08 8.74 -74.05 -0.65 -4.72 16 29 H 0.10 -0.74 7.96 -2.39 -0.02 -0.76 16 30 H -0.28 0.36 7.11 99.48 0.71 1.07 16 31 H -0.31 -1.62 7.11 99.48 0.71 -0.91 16 32 H 0.19 -1.33 6.52 -2.91 -0.02 -1.35 16 33 H 0.41 -1.83 7.85 -92.71 -0.73 -2.56 16 34 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.10 -0.17 6.31 -2.39 -0.02 -0.18 16 36 H 0.14 -0.62 6.65 -2.91 -0.02 -0.64 16 37 H 0.14 -0.56 8.06 -2.91 -0.02 -0.58 16 38 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 39 H 0.13 -0.18 8.06 -2.91 -0.02 -0.21 16 40 H 0.13 -0.10 8.05 -2.91 -0.02 -0.12 16 41 H 0.10 -0.53 7.71 -2.39 -0.02 -0.55 16 42 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.08 0.78 7.42 -2.38 -0.02 0.76 16 45 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.06 0.11 8.12 -2.39 -0.02 0.10 16 47 H 0.07 -0.09 8.11 -2.38 -0.02 -0.11 16 48 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 49 H 0.10 -0.16 7.69 -2.39 -0.02 -0.18 16 50 H 0.08 0.10 8.00 -2.38 -0.02 0.08 16 Total: 0.00 -21.90 396.94 0.28 -21.63 By element: Atomic # 1 Polarization: -10.79 SS G_CDS: -0.37 Total: -11.16 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 4.07 Total: 8.30 kcal Atomic # 7 Polarization: -3.24 SS G_CDS: -3.91 Total: -7.15 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -1.65 Total: -10.14 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: 2.13 Total: -1.48 kcal Total: -21.90 0.28 -21.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.108 kcal (2) G-P(sol) polarization free energy of solvation -21.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds