Wall clock time and date at job start Sun Mar 7 2021 08:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.38267 * 119.94219 * 119.72516 * 4 2 1 6 6 C 1.38146 * 120.05554 * 179.72698 * 5 4 2 7 7 C 1.38733 * 119.94011 * 0.54742 * 6 5 4 8 8 O 1.35899 * 120.05436 * 179.75096 * 7 6 5 9 9 C 1.42894 * 117.00420 * 359.97438 * 8 7 6 10 10 C 1.50698 * 109.47718 * 180.02562 * 9 8 7 11 11 O 1.21276 * 119.99662 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00182 * 179.97438 * 10 9 8 13 13 C 1.46507 * 120.00343 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.84319 * 336.19747 * 13 12 10 15 15 C 1.53775 * 113.61360 * 107.50146 * 13 12 10 16 16 C 1.53784 * 87.08162 * 139.98638 * 15 13 12 17 17 H 1.08994 * 113.69028 * 89.12417 * 16 15 13 18 18 C 1.50694 * 113.61385 * 220.01789 * 16 15 13 19 19 C 1.38234 * 120.00113 * 37.22679 * 18 16 15 20 20 C 1.38241 * 120.00030 * 179.80897 * 19 18 16 21 21 C 1.38229 * 120.00053 * 0.39529 * 20 19 18 22 22 C 1.38235 * 120.00111 * 359.85333 * 21 20 19 23 23 C 1.38239 * 119.99979 * 359.96294 * 22 21 20 24 24 C 1.53779 * 113.61664 * 205.00252 * 13 12 10 25 25 C 1.38731 * 119.88948 * 359.72638 * 7 6 5 26 26 C 1.38139 * 119.94606 * 0.02562 * 25 7 6 27 27 H 0.96708 * 113.99549 * 300.00274 * 1 2 3 28 28 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 29 29 H 1.48501 * 110.00188 * 178.68319 * 3 2 1 30 30 H 1.48498 * 110.00005 * 300.00280 * 3 2 1 31 31 H 1.07995 * 119.97264 * 359.97438 * 5 4 2 32 32 H 1.07994 * 120.03112 * 180.27943 * 6 5 4 33 33 H 1.09002 * 109.47059 * 300.00441 * 9 8 7 34 34 H 1.09005 * 109.47012 * 59.99619 * 9 8 7 35 35 H 0.97004 * 120.00148 * 0.02562 * 12 10 9 36 36 H 1.09004 * 113.61750 * 254.52989 * 15 13 12 37 37 H 1.09001 * 113.62075 * 25.43517 * 15 13 12 38 38 H 1.07997 * 120.00188 * 359.97438 * 19 18 16 39 39 H 1.08004 * 119.99699 * 180.22287 * 20 19 18 40 40 H 1.08001 * 120.00305 * 179.83788 * 21 20 19 41 41 H 1.08001 * 120.00648 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.00079 * 180.02562 * 23 22 21 43 43 H 1.08999 * 113.61553 * 334.56707 * 24 13 12 44 44 H 1.08994 * 113.61064 * 105.38583 * 24 13 12 45 45 H 1.08007 * 120.02679 * 179.97438 * 25 7 6 46 46 H 1.07999 * 119.97308 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7214 -0.0357 -2.1427 6 6 3.1878 -0.6862 -3.2686 7 6 2.8533 -2.0144 -3.4893 8 8 3.3067 -2.6552 -4.5987 9 6 4.1230 -1.9001 -5.4960 10 6 4.5279 -2.7688 -6.6589 11 8 4.1537 -3.9211 -6.7141 12 7 5.3049 -2.2650 -7.6381 13 6 5.6980 -3.1094 -8.7689 14 1 5.6733 -4.1730 -8.5316 15 6 4.9822 -2.7525 -10.0823 16 6 6.3261 -2.9957 -10.7892 17 1 6.4737 -4.0280 -11.1062 18 6 6.6228 -2.0002 -11.8809 19 6 6.2624 -0.6748 -11.7244 20 6 6.5381 0.2392 -12.7242 21 6 7.1669 -0.1737 -13.8839 22 6 7.5227 -1.5000 -14.0426 23 6 7.2504 -2.4133 -13.0412 24 6 7.0020 -2.6602 -9.4492 25 6 2.0557 -2.6875 -2.5753 26 6 1.5961 -2.0340 -1.4484 27 1 -0.3933 0.4418 0.7651 28 1 1.7923 -0.5139 0.8900 29 1 3.5346 1.7703 0.0321 30 1 1.5615 2.4679 -1.2084 31 1 2.9775 0.9997 -1.9729 32 1 3.8086 -0.1601 -3.9786 33 1 3.5612 -1.0411 -5.8629 34 1 5.0145 -1.5543 -4.9726 35 1 5.6038 -1.3432 -7.5942 36 1 4.2059 -3.4640 -10.3638 37 1 4.6455 -1.7168 -10.1287 38 1 5.7678 -0.3529 -10.8199 39 1 6.2596 1.2753 -12.6003 40 1 7.3799 0.5398 -14.6661 41 1 8.0136 -1.8228 -14.9488 42 1 7.5288 -3.4494 -13.1650 43 1 7.2176 -1.5993 -9.3224 44 1 7.8564 -3.2963 -9.2183 45 1 1.7936 -3.7215 -2.7451 46 1 0.9748 -2.5574 -0.7368 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_2989410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:41 Heat of formation + Delta-G solvation = -15.893106 kcal Electronic energy + Delta-G solvation = -27365.841386 eV Core-core repulsion = 23381.373024 eV Total energy + Delta-G solvation = -3984.468361 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.78610 -41.28832 -40.33669 -39.14255 -38.55196 -37.19418 -34.91394 -32.61544 -31.98841 -31.87051 -31.68837 -29.69424 -26.75041 -26.37681 -25.78108 -24.19561 -23.60044 -22.73064 -22.15381 -21.71560 -20.39666 -19.63490 -18.47840 -18.29189 -18.11349 -17.53815 -17.37440 -16.83457 -16.76509 -16.45323 -15.94797 -15.79571 -15.71112 -15.51902 -15.28333 -15.10169 -14.56192 -14.33051 -14.23856 -14.12913 -13.98922 -13.92286 -13.66052 -13.50321 -13.47090 -13.15750 -12.59368 -12.51519 -12.33934 -12.22601 -12.08283 -11.86938 -11.84874 -11.69219 -11.49831 -11.02265 -10.29607 -10.20905 -10.18402 -9.82931 -9.56813 -9.33393 -4.92069 0.10943 0.16471 0.41607 0.48948 1.32544 1.34669 1.39940 1.65613 1.97204 2.49239 2.51712 2.82184 3.35726 3.41208 3.48486 3.59134 3.63931 3.69996 3.73417 3.88751 3.89731 3.95762 3.98975 4.03209 4.12169 4.13373 4.16391 4.28029 4.31332 4.40852 4.52273 4.58496 4.60458 4.65904 4.70200 4.80139 4.80432 4.92711 4.98194 5.02805 5.06689 5.08023 5.14320 5.18104 5.36010 5.45290 5.55730 5.57539 5.63479 5.71912 6.11258 6.13809 6.38701 6.92756 7.04725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.078 4.078 3 Si 0.774 3.226 4 C -0.129 4.129 5 C -0.098 4.098 6 C -0.201 4.201 7 C 0.121 3.879 8 O -0.315 6.315 9 C 0.034 3.966 10 C 0.515 3.485 11 O -0.571 6.571 12 N -0.698 5.698 13 C 0.120 3.880 14 H 0.097 0.903 15 C -0.142 4.142 16 C -0.069 4.069 17 H 0.104 0.896 18 C -0.077 4.077 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.160 4.160 26 C -0.055 4.055 27 H 0.403 0.597 28 H 0.093 0.907 29 H -0.285 1.285 30 H -0.296 1.296 31 H 0.126 0.874 32 H 0.161 0.839 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.421 0.579 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.137 0.863 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 6.864 2.259 7.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.187 4.187 3 Si 0.680 3.320 4 C -0.130 4.130 5 C -0.116 4.116 6 C -0.220 4.220 7 C 0.076 3.924 8 O -0.228 6.228 9 C -0.044 4.044 10 C 0.301 3.699 11 O -0.449 6.449 12 N -0.352 5.352 13 C 0.015 3.985 14 H 0.115 0.885 15 C -0.181 4.181 16 C -0.087 4.087 17 H 0.122 0.878 18 C -0.077 4.077 19 C -0.142 4.142 20 C -0.147 4.147 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.159 4.159 25 C -0.179 4.179 26 C -0.073 4.073 27 H 0.254 0.746 28 H 0.110 0.890 29 H -0.212 1.212 30 H -0.224 1.224 31 H 0.143 0.857 32 H 0.178 0.822 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.259 0.741 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.122 0.878 44 H 0.102 0.898 45 H 0.155 0.845 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.054 6.116 1.211 6.942 hybrid contribution 0.219 -0.255 -0.575 0.666 sum 3.273 5.861 0.636 6.743 Atomic orbital electron populations 1.86445 1.17385 1.82420 1.51342 1.24816 0.85768 1.11097 0.97028 0.94309 0.77363 0.75391 0.84968 1.19695 1.00701 0.95087 0.97480 1.20866 0.97745 0.98958 0.94022 1.21394 1.05953 0.93792 1.00816 1.19161 0.94830 0.91580 0.86831 1.86132 1.65105 1.40043 1.31539 1.22771 0.97605 0.94380 0.89614 1.20492 0.78265 0.87480 0.83666 1.90760 1.55385 1.20187 1.78605 1.45685 1.51167 1.16550 1.21757 1.22524 0.96185 0.96008 0.83782 0.88479 1.23611 0.96678 1.03152 0.94609 1.21302 0.96682 0.98587 0.92172 0.87823 1.19781 0.98336 0.94451 0.95109 1.21221 1.00400 0.92702 0.99898 1.21442 0.98756 1.00502 0.93953 1.21455 0.99195 0.96473 0.98471 1.21428 1.00096 0.93775 0.99576 1.21323 0.99449 1.00365 0.93743 1.23398 0.96147 1.03419 0.92916 1.20732 1.00824 1.01615 0.94699 1.20997 0.96620 0.93650 0.96072 0.74608 0.88968 1.21235 1.22373 0.85659 0.82170 0.85967 0.85744 0.74079 0.91785 0.88215 0.84512 0.84628 0.85012 0.85020 0.85232 0.87756 0.89848 0.84548 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.02 12.74 -148.98 -1.90 -1.88 16 2 C -0.08 0.04 2.81 71.24 0.20 0.24 16 3 Si 0.77 -2.17 29.78 68.60 2.04 -0.12 16 4 C -0.13 -0.66 5.42 -19.85 -0.11 -0.76 16 5 C -0.10 -0.44 8.66 22.25 0.19 -0.25 16 6 C -0.20 -0.56 9.04 22.37 0.20 -0.36 16 7 C 0.12 0.81 6.69 22.51 0.15 0.96 16 8 O -0.32 -2.55 9.67 -73.38 -0.71 -3.26 16 9 C 0.03 -0.04 5.22 71.24 0.37 0.33 16 10 C 0.51 1.95 7.91 87.66 0.69 2.64 16 11 O -0.57 -8.79 16.10 16.02 0.26 -8.53 16 12 N -0.70 2.54 5.35 -440.05 -2.36 0.19 16 13 C 0.12 -0.19 4.24 45.51 0.19 0.00 16 14 H 0.10 0.34 7.46 -2.39 -0.02 0.32 16 15 C -0.14 0.28 7.25 31.12 0.23 0.51 16 16 C -0.07 0.19 3.98 -11.01 -0.04 0.15 16 17 H 0.10 -0.30 8.09 -2.39 -0.02 -0.32 16 18 C -0.08 0.03 5.29 -19.87 -0.11 -0.08 16 19 C -0.12 0.17 8.63 22.27 0.19 0.36 16 20 C -0.13 0.07 10.05 22.27 0.22 0.29 16 21 C -0.14 -0.07 10.05 22.27 0.22 0.15 16 22 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 23 C -0.13 -0.11 9.71 22.27 0.22 0.11 16 24 C -0.12 0.63 7.30 31.12 0.23 0.86 16 25 C -0.16 -1.16 9.99 22.36 0.22 -0.93 16 26 C -0.06 -0.31 9.60 22.25 0.21 -0.10 16 27 H 0.40 -4.29 8.74 -74.05 -0.65 -4.94 16 28 H 0.09 -0.41 7.96 -2.39 -0.02 -0.42 16 29 H -0.29 -0.55 7.11 99.48 0.71 0.16 16 30 H -0.30 -1.33 7.11 99.48 0.71 -0.62 16 31 H 0.13 0.32 4.87 -2.91 -0.01 0.31 16 32 H 0.16 -0.72 6.30 -2.91 -0.02 -0.74 16 33 H 0.12 -0.87 7.66 -2.39 -0.02 -0.89 16 34 H 0.12 -0.93 7.66 -2.38 -0.02 -0.95 16 35 H 0.42 -4.74 8.73 -92.70 -0.81 -5.55 16 36 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.10 -0.40 6.30 -2.39 -0.02 -0.41 16 38 H 0.14 -0.77 6.64 -2.91 -0.02 -0.79 16 39 H 0.14 -0.56 8.06 -2.91 -0.02 -0.59 16 40 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 41 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 42 H 0.13 -0.23 8.05 -2.91 -0.02 -0.25 16 43 H 0.10 -0.81 7.71 -2.39 -0.02 -0.83 16 44 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 45 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 46 H 0.15 0.37 8.06 -2.91 -0.02 0.35 16 Total: 0.00 -26.41 382.50 0.65 -25.76 By element: Atomic # 1 Polarization: -15.98 SS G_CDS: -0.40 Total: -16.38 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 3.72 Total: 4.23 kcal Atomic # 7 Polarization: 2.54 SS G_CDS: -2.36 Total: 0.19 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -2.35 Total: -13.67 kcal Atomic # 14 Polarization: -2.17 SS G_CDS: 2.04 Total: -0.12 kcal Total: -26.41 0.65 -25.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_2989410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.865 kcal (2) G-P(sol) polarization free energy of solvation -26.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds