Wall clock time and date at job start Sun Mar 7 2021 08:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86300 * 109.47241 * 2 1 4 4 C 1.50700 * 109.47341 * 240.00126 * 2 1 3 5 5 C 1.38264 * 119.94555 * 119.72100 * 4 2 1 6 6 C 1.38143 * 120.05501 * 179.73030 * 5 4 2 7 7 C 1.38739 * 119.94235 * 0.56929 * 6 5 4 8 8 O 1.35899 * 120.05323 * 179.68955 * 7 6 5 9 9 C 1.42900 * 117.00511 * 0.02562 * 8 7 6 10 10 C 1.52994 * 109.47389 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47158 * 180.02562 * 10 9 8 12 12 O 1.21281 * 119.99616 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00298 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00326 * 180.02562 * 13 11 10 15 15 H 1.09005 * 112.84489 * 25.33305 * 14 13 11 16 16 C 1.53786 * 113.61263 * 156.52743 * 14 13 11 17 17 C 1.53783 * 87.07726 * 139.98349 * 16 14 13 18 18 H 1.09001 * 113.61258 * 89.20211 * 17 16 14 19 19 C 1.50702 * 113.61201 * 220.01831 * 17 16 14 20 20 C 1.38230 * 119.99822 * 59.72601 * 19 17 16 21 21 C 1.38245 * 119.99809 * 179.76739 * 20 19 17 22 22 C 1.38233 * 119.99627 * 0.50767 * 21 20 19 23 23 C 1.38231 * 120.00242 * 359.74579 * 22 21 20 24 24 C 1.38233 * 119.99751 * 240.00109 * 19 17 16 25 25 C 1.53772 * 113.61660 * 254.13455 * 14 13 11 26 26 C 1.38726 * 119.88956 * 359.70523 * 7 6 5 27 27 C 1.38153 * 119.94564 * 0.02562 * 26 7 6 28 28 H 0.96693 * 114.00306 * 59.99646 * 1 2 3 29 29 H 1.09000 * 109.47349 * 120.00016 * 2 1 3 30 30 H 1.48506 * 110.00048 * 298.68597 * 3 2 1 31 31 H 1.48502 * 109.99996 * 59.99922 * 3 2 1 32 32 H 1.08002 * 119.97450 * 359.97438 * 5 4 2 33 33 H 1.07999 * 120.02707 * 180.25811 * 6 5 4 34 34 H 1.09007 * 109.47130 * 300.00980 * 9 8 7 35 35 H 1.09003 * 109.46727 * 59.99954 * 9 8 7 36 36 H 1.08996 * 109.47071 * 300.00340 * 10 9 8 37 37 H 1.09001 * 109.46830 * 60.00503 * 10 9 8 38 38 H 0.96999 * 119.99728 * 359.97438 * 13 11 10 39 39 H 1.09000 * 113.61292 * 254.52676 * 16 14 13 40 40 H 1.08999 * 113.61591 * 25.43273 * 16 14 13 41 41 H 1.07997 * 120.00311 * 0.02562 * 20 19 17 42 42 H 1.07992 * 120.00006 * 180.22974 * 21 20 19 43 43 H 1.08000 * 120.00066 * 179.72688 * 22 21 20 44 44 H 1.08008 * 120.00271 * 179.97438 * 23 22 21 45 45 H 1.07999 * 120.00378 * 0.02562 * 24 19 17 46 46 H 1.09004 * 113.61706 * 334.56776 * 25 14 13 47 47 H 1.09005 * 113.61727 * 105.46577 * 25 14 13 48 48 H 1.07999 * 120.03394 * 179.97438 * 26 7 6 49 49 H 1.07995 * 119.97802 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7214 -0.0356 -2.1427 6 6 3.1878 -0.6862 -3.2686 7 6 2.8530 -2.0143 -3.4895 8 8 3.3053 -2.6547 -4.5996 9 6 4.1220 -1.8996 -5.4968 10 6 4.5317 -2.7812 -6.6782 11 6 5.3934 -1.9850 -7.6240 12 8 5.6545 -0.8266 -7.3771 13 7 5.8739 -2.5601 -8.7441 14 6 6.7121 -1.7862 -9.6633 15 1 7.2311 -0.9634 -9.1717 16 6 7.6277 -2.6552 -10.5417 17 6 7.3020 -1.6927 -11.6960 18 1 7.9830 -0.8442 -11.7623 19 6 7.0983 -2.3843 -13.0194 20 6 6.0998 -3.3301 -13.1584 21 6 5.9098 -3.9610 -14.3737 22 6 6.7250 -3.6537 -15.4469 23 6 7.7269 -2.7116 -15.3064 24 6 7.9135 -2.0769 -14.0926 25 6 5.9898 -1.3740 -10.9567 26 6 2.0554 -2.6875 -2.5756 27 6 1.5961 -2.0340 -1.4483 28 1 -0.3933 0.4417 -0.7649 29 1 1.7923 -0.5138 0.8900 30 1 1.5878 2.4586 -1.2242 31 1 1.5615 2.4679 1.2085 32 1 2.9775 0.9998 -1.9730 33 1 3.8083 -0.1599 -3.9788 34 1 3.5606 -1.0398 -5.8628 35 1 5.0139 -1.5550 -4.9735 36 1 5.0928 -3.6410 -6.3124 37 1 3.6395 -3.1253 -7.2013 38 1 5.6654 -3.4866 -8.9413 39 1 8.6740 -2.6333 -10.2371 40 1 7.2521 -3.6665 -10.6973 41 1 5.4655 -3.5731 -12.3188 42 1 5.1274 -4.6972 -14.4834 43 1 6.5795 -4.1497 -16.3951 44 1 8.3642 -2.4718 -16.1448 45 1 8.6967 -1.3415 -13.9826 46 1 5.1655 -2.0345 -11.2261 47 1 5.7156 -0.3195 -10.9867 48 1 1.7930 -3.7212 -2.7454 49 1 0.9749 -2.5574 -0.7367 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:44 Heat of formation + Delta-G solvation = -25.911915 kcal Electronic energy + Delta-G solvation = -28953.697705 eV Core-core repulsion = 24813.257276 eV Total energy + Delta-G solvation = -4140.440429 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.58089 -41.24140 -40.36005 -39.23293 -38.66128 -37.29939 -34.78259 -33.33980 -32.09099 -31.83523 -31.64997 -31.26501 -26.97428 -26.70517 -26.13609 -25.14157 -23.65512 -23.48434 -22.41846 -22.08613 -21.48645 -20.30439 -19.48528 -18.46422 -18.19083 -17.72794 -17.47347 -17.13297 -16.88149 -16.51396 -16.33391 -16.17129 -16.00654 -15.84035 -15.57174 -15.33774 -14.84356 -14.71770 -14.45652 -14.35232 -14.31261 -14.21086 -14.00091 -13.87421 -13.49254 -13.45177 -13.13969 -12.85703 -12.83940 -12.51710 -12.31012 -12.28807 -12.06447 -11.81378 -11.77994 -11.66459 -11.61209 -11.45538 -10.96742 -10.60998 -10.08801 -10.03998 -9.81135 -9.54490 -9.22126 -4.93731 0.27671 0.30401 0.43638 0.50684 1.31360 1.52018 1.58193 1.72600 1.93584 2.51530 2.64979 2.84239 3.42652 3.46125 3.56327 3.67403 3.71694 3.73213 3.82590 3.88187 3.90999 3.94097 4.01736 4.06735 4.15077 4.19755 4.26023 4.29972 4.34576 4.44667 4.55832 4.57626 4.62719 4.66700 4.69236 4.71618 4.74531 4.78962 4.83630 4.97457 4.97683 5.01933 5.11357 5.17707 5.18079 5.23243 5.28684 5.48725 5.54072 5.59475 5.65229 5.71935 5.74348 6.13152 6.31957 6.48467 6.48569 7.17017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.074 4.074 3 Si 0.758 3.242 4 C -0.159 4.159 5 C -0.080 4.080 6 C -0.210 4.210 7 C 0.123 3.877 8 O -0.321 6.321 9 C 0.072 3.928 10 C -0.133 4.133 11 C 0.520 3.480 12 O -0.584 6.584 13 N -0.705 5.705 14 C 0.121 3.879 15 H 0.099 0.901 16 C -0.123 4.123 17 C -0.070 4.070 18 H 0.103 0.897 19 C -0.077 4.077 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.158 4.158 27 C -0.059 4.059 28 H 0.385 0.615 29 H 0.127 0.873 30 H -0.287 1.287 31 H -0.301 1.301 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.419 0.581 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.096 0.904 47 H 0.063 0.937 48 H 0.142 0.858 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.772 -4.143 -3.299 5.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.183 4.183 3 Si 0.664 3.336 4 C -0.160 4.160 5 C -0.097 4.097 6 C -0.228 4.228 7 C 0.078 3.922 8 O -0.235 6.235 9 C -0.003 4.003 10 C -0.173 4.173 11 C 0.307 3.693 12 O -0.464 6.464 13 N -0.356 5.356 14 C 0.016 3.984 15 H 0.117 0.883 16 C -0.161 4.161 17 C -0.089 4.089 18 H 0.122 0.878 19 C -0.077 4.077 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.149 4.149 25 C -0.180 4.180 26 C -0.177 4.177 27 C -0.077 4.077 28 H 0.234 0.766 29 H 0.144 0.856 30 H -0.214 1.214 31 H -0.230 1.230 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.256 0.744 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.115 0.885 47 H 0.082 0.918 48 H 0.160 0.840 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.822 -3.019 -2.652 4.911 hybrid contribution -1.077 -0.110 -0.885 1.398 sum 1.745 -3.129 -3.537 5.035 Atomic orbital electron populations 1.86558 1.18616 1.80294 1.50174 1.25093 0.83297 1.11266 0.98662 0.94161 0.90596 0.72573 0.76245 1.20257 1.02008 0.95564 0.98130 1.20992 0.95902 0.99905 0.92936 1.21414 1.05966 0.94394 1.01066 1.19190 0.94500 0.91418 0.87108 1.85957 1.65266 1.40762 1.31508 1.22461 0.94140 0.94127 0.89580 1.21447 1.01943 0.99585 0.94297 1.20672 0.79661 0.86952 0.81965 1.90736 1.60561 1.19301 1.75803 1.45858 1.51343 1.16472 1.21973 1.22465 0.92358 0.95630 0.87992 0.88337 1.23386 1.00539 0.98815 0.93318 1.21350 0.98524 0.98661 0.90317 0.87847 1.19800 0.95939 0.96914 0.95007 1.21216 0.98197 0.96637 0.98145 1.21442 0.99796 1.00192 0.93249 1.21451 0.96062 0.98413 0.99730 1.21428 0.98541 0.96873 0.98058 1.21325 0.99956 1.00578 0.93066 1.23619 0.97289 1.02258 0.94863 1.20674 1.00908 1.01602 0.94508 1.20978 0.97005 0.93660 0.96045 0.76569 0.85572 1.21393 1.22973 0.83963 0.84274 0.91816 0.91425 0.85431 0.85610 0.74361 0.89929 0.88043 0.84568 0.84675 0.85051 0.85039 0.85204 0.88516 0.91773 0.84017 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.84 12.77 -148.98 -1.90 -3.75 16 2 C -0.07 -0.03 2.82 71.24 0.20 0.17 16 3 Si 0.76 -0.33 29.78 68.60 2.04 1.71 16 4 C -0.16 -0.24 5.39 -19.85 -0.11 -0.35 16 5 C -0.08 -0.10 8.66 22.25 0.19 0.09 16 6 C -0.21 -0.58 9.04 22.37 0.20 -0.38 16 7 C 0.12 0.49 6.69 22.51 0.15 0.64 16 8 O -0.32 -0.93 10.14 -92.42 -0.94 -1.86 16 9 C 0.07 0.02 4.03 71.98 0.29 0.31 16 10 C -0.13 0.68 6.07 29.85 0.18 0.86 16 11 C 0.52 -0.16 7.83 87.66 0.69 0.53 16 12 O -0.58 -5.19 15.60 -3.03 -0.05 -5.24 16 13 N -0.71 3.72 5.36 -440.04 -2.36 1.36 16 14 C 0.12 -0.38 4.21 45.52 0.19 -0.19 16 15 H 0.10 0.12 7.50 -2.38 -0.02 0.10 16 16 C -0.12 0.72 7.30 31.12 0.23 0.95 16 17 C -0.07 0.24 3.98 -10.95 -0.04 0.20 16 18 H 0.10 -0.39 8.09 -2.39 -0.02 -0.40 16 19 C -0.08 0.06 5.29 -19.87 -0.11 -0.05 16 20 C -0.12 0.20 8.60 22.27 0.19 0.39 16 21 C -0.13 0.08 10.05 22.27 0.22 0.31 16 22 C -0.14 -0.05 10.05 22.27 0.22 0.18 16 23 C -0.13 -0.09 10.05 22.27 0.22 0.14 16 24 C -0.13 -0.06 9.71 22.27 0.22 0.16 16 25 C -0.14 0.43 7.27 31.17 0.23 0.65 16 26 C -0.16 -0.44 9.99 22.37 0.22 -0.22 16 27 C -0.06 -0.12 9.60 22.26 0.21 0.09 16 28 H 0.39 -0.70 8.70 -74.06 -0.64 -1.35 16 29 H 0.13 -0.19 7.96 -2.39 -0.02 -0.21 16 30 H -0.29 -1.10 7.11 99.48 0.71 -0.40 16 31 H -0.30 -2.12 7.11 99.48 0.71 -1.41 16 32 H 0.14 -0.33 4.87 -2.91 -0.01 -0.35 16 33 H 0.14 0.15 6.30 -2.91 -0.02 0.13 16 34 H 0.06 0.12 7.62 -2.38 -0.02 0.10 16 35 H 0.07 0.09 7.62 -2.39 -0.02 0.07 16 36 H 0.13 -1.13 8.14 -2.39 -0.02 -1.15 16 37 H 0.13 -1.09 8.14 -2.39 -0.02 -1.11 16 38 H 0.42 -4.81 8.71 -92.71 -0.81 -5.62 16 39 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H 0.10 -0.80 7.68 -2.39 -0.02 -0.82 16 41 H 0.14 -0.78 6.68 -2.91 -0.02 -0.80 16 42 H 0.14 -0.57 8.06 -2.91 -0.02 -0.59 16 43 H 0.13 -0.35 8.06 -2.91 -0.02 -0.38 16 44 H 0.13 -0.30 8.06 -2.91 -0.02 -0.33 16 45 H 0.13 -0.29 8.05 -2.91 -0.02 -0.31 16 46 H 0.10 -0.43 6.34 -2.39 -0.02 -0.44 16 47 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 48 H 0.14 0.03 8.06 -2.91 -0.02 0.01 16 49 H 0.14 0.01 8.06 -2.91 -0.02 -0.01 16 Total: 0.00 -19.27 403.47 0.17 -19.09 By element: Atomic # 1 Polarization: -15.37 SS G_CDS: -0.43 Total: -15.80 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 3.81 Total: 4.48 kcal Atomic # 7 Polarization: 3.72 SS G_CDS: -2.36 Total: 1.36 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -2.89 Total: -10.84 kcal Atomic # 14 Polarization: -0.33 SS G_CDS: 2.04 Total: 1.71 kcal Total: -19.27 0.17 -19.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.819 kcal (2) G-P(sol) polarization free energy of solvation -19.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds