Wall clock time and date at job start Sun Mar 7 2021 08:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47413 * 2 1 4 4 C 1.50700 * 109.47367 * 119.99974 * 2 1 3 5 5 C 1.38239 * 119.97684 * 244.97298 * 4 2 1 6 6 C 1.38288 * 120.11592 * 180.02562 * 5 4 2 7 7 C 1.38121 * 120.05209 * 0.02562 * 6 5 4 8 8 C 1.38755 * 119.94685 * 0.02562 * 7 6 5 9 9 O 1.35898 * 120.05301 * 180.02562 * 8 7 6 10 10 C 1.42899 * 117.00413 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47096 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.47319 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99539 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00344 * 180.02562 * 12 11 10 15 15 C 1.46495 * 119.99850 * 180.02562 * 14 12 11 16 16 H 1.08999 * 112.84913 * 334.65899 * 15 14 12 17 17 C 1.53778 * 113.61692 * 105.85998 * 15 14 12 18 18 C 1.53955 * 87.01986 * 139.95049 * 17 15 14 19 19 H 1.08997 * 113.54220 * 89.19173 * 18 17 15 20 20 C 1.50704 * 113.74386 * 220.05765 * 18 17 15 21 21 C 1.38240 * 119.99755 * 37.32367 * 20 18 17 22 22 C 1.38232 * 119.99899 * 179.77002 * 21 20 18 23 23 C 1.38244 * 119.99735 * 0.50269 * 22 21 20 24 24 C 1.38234 * 119.99847 * 359.75126 * 23 22 21 25 25 C 1.38229 * 120.00329 * 359.97438 * 24 23 22 26 26 C 1.53785 * 87.11329 * 334.63554 * 18 17 15 27 27 C 1.38170 * 119.97134 * 64.99873 * 4 2 1 28 28 H 0.96706 * 113.99914 * 299.99579 * 1 2 3 29 29 H 1.09003 * 109.46743 * 240.00257 * 2 1 3 30 30 H 1.48500 * 109.99933 * 300.00434 * 3 2 1 31 31 H 1.48500 * 109.99546 * 61.31999 * 3 2 1 32 32 H 1.08000 * 119.94311 * 0.02688 * 5 4 2 33 33 H 1.08001 * 119.97262 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.02567 * 180.26919 * 7 6 5 35 35 H 1.09007 * 109.46508 * 299.99479 * 10 9 8 36 36 H 1.08993 * 109.47492 * 59.99803 * 10 9 8 37 37 H 1.08998 * 109.47367 * 299.99562 * 11 10 9 38 38 H 1.09007 * 109.47448 * 59.99893 * 11 10 9 39 39 H 0.97000 * 119.99475 * 359.97438 * 14 12 11 40 40 H 1.09003 * 113.61671 * 254.52437 * 17 15 14 41 41 H 1.08996 * 113.61382 * 25.42953 * 17 15 14 42 42 H 1.07999 * 119.99824 * 359.97438 * 21 20 18 43 43 H 1.07998 * 120.00271 * 180.23189 * 22 21 20 44 44 H 1.07998 * 119.99820 * 179.72571 * 23 22 21 45 45 H 1.08005 * 119.99354 * 179.97438 * 24 23 22 46 46 H 1.07997 * 119.99920 * 179.97438 * 25 24 23 47 47 H 1.08997 * 113.61661 * 270.81398 * 26 18 17 48 48 H 1.09001 * 113.61424 * 139.90327 * 26 18 17 49 49 H 1.08005 * 120.02538 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6392 -0.0119 2.1907 6 6 3.1020 -0.6610 3.3206 7 6 2.8584 -2.0097 3.4922 8 6 2.1490 -2.7134 2.5294 9 8 1.9076 -4.0403 2.6962 10 6 2.4129 -4.6470 3.8873 11 6 2.0451 -6.1320 3.8987 12 6 2.5786 -6.7721 5.1545 13 8 3.1929 -6.1060 5.9607 14 7 2.3739 -8.0848 5.3812 15 6 2.8920 -8.7067 6.6022 16 1 3.7538 -8.1803 7.0124 17 6 1.8050 -9.0157 7.6452 18 6 2.5496 -10.3366 7.9117 19 1 3.3172 -10.2561 8.6814 20 6 1.6359 -11.5173 8.1179 21 6 0.4745 -11.6301 7.3767 22 6 -0.3612 -12.7155 7.5624 23 6 -0.0407 -13.6827 8.4967 24 6 1.1181 -13.5671 9.2415 25 6 1.9566 -12.4846 9.0518 26 6 3.0990 -10.2256 6.4797 27 6 1.6845 -2.0595 1.3977 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5138 -0.8901 30 1 1.5615 2.4679 -1.2084 31 1 1.5880 2.4585 1.2243 32 1 2.8311 1.0426 2.0581 33 1 3.6545 -0.1129 4.0695 34 1 3.2162 -2.5153 4.3769 35 1 3.4974 -4.5406 3.9171 36 1 1.9757 -4.1581 4.7578 37 1 0.9607 -6.2380 3.8690 38 1 2.4820 -6.6214 3.0281 39 1 1.8829 -8.6175 4.7362 40 1 1.8081 -8.3327 8.4946 41 1 0.8132 -9.1528 7.2146 42 1 0.2217 -10.8720 6.6502 43 1 -1.2666 -12.8056 6.9807 44 1 -0.6958 -14.5284 8.6449 45 1 1.3682 -14.3225 9.9717 46 1 2.8617 -12.3942 9.6340 47 1 2.4616 -10.6941 5.7299 48 1 4.1453 -10.5178 6.3896 49 1 1.1322 -2.6050 0.6468 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16147626_4549614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:48 Heat of formation + Delta-G solvation = -29.886051 kcal Electronic energy + Delta-G solvation = -28987.613719 eV Core-core repulsion = 24847.000959 eV Total energy + Delta-G solvation = -4140.612760 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.62800 -41.22637 -40.37916 -39.17320 -38.69660 -37.31519 -34.81059 -33.31576 -32.44125 -31.91520 -31.66248 -30.73214 -27.13986 -26.84860 -26.43825 -24.95256 -23.65859 -23.62864 -22.56906 -21.93031 -21.50040 -20.40402 -19.31719 -18.30785 -18.17730 -17.67395 -17.48847 -17.11444 -17.04298 -16.85083 -16.49047 -16.21064 -15.99923 -15.86473 -15.48673 -15.37003 -14.94371 -14.76239 -14.47740 -14.37356 -14.29838 -14.05351 -14.04110 -13.91310 -13.61327 -13.23343 -13.18333 -12.93165 -12.83782 -12.62615 -12.40641 -12.36618 -11.90530 -11.88699 -11.81004 -11.76237 -11.53991 -11.51884 -10.95270 -10.60956 -10.15765 -9.89674 -9.86176 -9.60388 -9.20669 -4.93327 0.25469 0.38340 0.45246 0.45874 1.28618 1.48847 1.62081 1.69319 1.97986 2.46378 2.71159 2.78472 3.33252 3.40161 3.48902 3.56081 3.61606 3.66163 3.79203 3.81432 3.85216 3.91604 3.95983 4.05605 4.08478 4.09306 4.19802 4.24445 4.29369 4.35095 4.47221 4.53258 4.55452 4.56558 4.57837 4.61073 4.63208 4.70200 4.73683 4.85397 4.90164 5.01360 5.02316 5.08724 5.13799 5.30793 5.42047 5.42441 5.48478 5.53339 5.59900 5.67361 5.72480 6.05642 6.32368 6.41030 6.41853 7.07051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.076 4.076 3 Si 0.690 3.310 4 C -0.080 4.080 5 C -0.156 4.156 6 C -0.073 4.073 7 C -0.202 4.202 8 C 0.132 3.868 9 O -0.316 6.316 10 C 0.075 3.925 11 C -0.143 4.143 12 C 0.522 3.478 13 O -0.538 6.538 14 N -0.718 5.718 15 C 0.122 3.878 16 H 0.118 0.882 17 C -0.145 4.145 18 C -0.071 4.071 19 H 0.103 0.897 20 C -0.070 4.070 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.135 4.135 27 C -0.125 4.125 28 H 0.376 0.624 29 H 0.120 0.880 30 H -0.257 1.257 31 H -0.260 1.260 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.403 0.597 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -2.981 0.261 3.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.186 4.186 3 Si 0.592 3.408 4 C -0.081 4.081 5 C -0.174 4.174 6 C -0.091 4.091 7 C -0.220 4.220 8 C 0.087 3.913 9 O -0.230 6.230 10 C -0.001 4.001 11 C -0.182 4.182 12 C 0.308 3.692 13 O -0.415 6.415 14 N -0.369 5.369 15 C 0.017 3.983 16 H 0.135 0.865 17 C -0.183 4.183 18 C -0.090 4.090 19 H 0.121 0.879 20 C -0.070 4.070 21 C -0.136 4.136 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.134 4.134 26 C -0.173 4.173 27 C -0.144 4.144 28 H 0.224 0.776 29 H 0.137 0.863 30 H -0.182 1.182 31 H -0.185 1.185 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.238 0.762 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.108 0.892 48 H 0.098 0.902 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.524 -2.101 0.162 2.601 hybrid contribution -1.253 -0.631 0.557 1.510 sum 0.270 -2.732 0.719 2.838 Atomic orbital electron populations 1.86610 1.17565 1.80018 1.49281 1.25076 0.84063 1.11128 0.98297 0.94840 0.91702 0.74207 0.80075 1.20056 0.98006 0.93612 0.96409 1.20975 1.01415 0.99933 0.95094 1.20929 0.97569 0.93652 0.96977 1.21402 1.04138 0.95961 1.00537 1.18956 0.95136 0.82662 0.94534 1.85974 1.74489 1.20290 1.42270 1.22414 0.99717 0.91819 0.86146 1.21484 1.04271 0.95097 0.97392 1.20333 0.79307 0.82247 0.87320 1.90751 1.40763 1.62367 1.47581 1.45953 1.57747 1.09570 1.23673 1.22570 0.97942 0.92815 0.84969 0.86456 1.23645 0.98861 0.96291 0.99549 1.21359 0.97439 0.92490 0.97687 0.87911 1.19627 0.95286 0.95661 0.96454 1.20982 0.94505 0.98187 0.99903 1.21174 0.99598 0.94425 0.98382 1.21210 0.97288 0.99213 0.96474 1.21198 0.94767 0.98045 0.99516 1.21088 0.99797 0.94321 0.98176 1.23447 1.02548 0.94634 0.96679 1.20247 1.03224 0.93691 0.97232 0.77611 0.86254 1.18238 1.18523 0.85406 0.85177 0.84974 0.90863 0.90965 0.87472 0.87411 0.76178 0.90491 0.89208 0.86201 0.86025 0.86048 0.85963 0.86016 0.89185 0.90176 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.93 12.83 -35.23 -0.45 -1.38 16 2 C -0.08 -0.02 2.80 36.01 0.10 0.08 16 3 Si 0.69 -0.45 29.88 -169.99 -5.08 -5.53 16 4 C -0.08 -0.08 5.35 -104.65 -0.56 -0.64 16 5 C -0.16 -0.06 8.67 -39.56 -0.34 -0.40 16 6 C -0.07 -0.04 10.04 -39.61 -0.40 -0.43 16 7 C -0.20 -0.28 9.04 -39.43 -0.36 -0.63 16 8 C 0.13 0.30 6.69 -39.22 -0.26 0.04 16 9 O -0.32 -0.62 10.14 -19.42 -0.20 -0.82 16 10 C 0.07 0.03 4.03 37.16 0.15 0.18 16 11 C -0.14 0.26 6.07 -27.88 -0.17 0.09 16 12 C 0.52 0.07 7.83 -10.98 -0.09 -0.02 16 13 O -0.54 -2.22 15.60 5.55 0.09 -2.14 16 14 N -0.72 1.50 5.36 -53.01 -0.28 1.21 16 15 C 0.12 -0.17 4.21 -67.12 -0.28 -0.46 16 16 H 0.12 0.02 7.50 -51.93 -0.39 -0.37 16 17 C -0.14 0.20 7.27 -25.83 -0.19 0.01 16 18 C -0.07 0.11 3.97 -90.86 -0.36 -0.25 16 19 H 0.10 -0.20 8.09 -51.93 -0.42 -0.62 16 20 C -0.07 0.01 5.29 -104.62 -0.55 -0.54 16 21 C -0.12 0.04 8.63 -39.58 -0.34 -0.30 16 22 C -0.12 0.00 10.05 -39.58 -0.40 -0.40 16 23 C -0.12 -0.03 10.05 -39.58 -0.40 -0.43 16 24 C -0.12 -0.03 10.05 -39.59 -0.40 -0.43 16 25 C -0.12 -0.02 9.71 -39.59 -0.38 -0.41 16 26 C -0.13 0.33 7.30 -25.91 -0.19 0.14 16 27 C -0.13 -0.26 9.62 -39.43 -0.38 -0.64 16 28 H 0.38 -0.39 8.70 45.56 0.40 0.01 16 29 H 0.12 -0.06 7.96 -51.93 -0.41 -0.47 16 30 H -0.26 -0.66 7.11 56.52 0.40 -0.26 16 31 H -0.26 -0.32 7.01 56.52 0.40 0.08 16 32 H 0.13 -0.17 4.84 -52.49 -0.25 -0.42 16 33 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 34 H 0.13 0.06 6.30 -52.49 -0.33 -0.27 16 35 H 0.07 0.05 7.62 -51.93 -0.40 -0.35 16 36 H 0.07 0.06 7.62 -51.93 -0.40 -0.34 16 37 H 0.11 -0.34 8.14 -51.93 -0.42 -0.76 16 38 H 0.11 -0.35 8.14 -51.93 -0.42 -0.77 16 39 H 0.40 -1.89 8.71 -40.82 -0.36 -2.24 16 40 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 41 H 0.09 -0.15 6.32 -51.93 -0.33 -0.48 16 42 H 0.12 -0.24 6.66 -52.49 -0.35 -0.59 16 43 H 0.12 -0.19 8.06 -52.49 -0.42 -0.62 16 44 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 45 H 0.12 -0.16 8.06 -52.48 -0.42 -0.58 16 46 H 0.12 -0.15 8.05 -52.49 -0.42 -0.57 16 47 H 0.09 -0.27 7.70 -51.93 -0.40 -0.67 16 48 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 49 H 0.13 0.26 8.06 -52.48 -0.42 -0.16 16 LS Contribution 403.52 15.07 6.08 6.08 Total: 0.00 -8.04 403.52 -12.71 -20.74 By element: Atomic # 1 Polarization: -5.67 SS G_CDS: -7.07 Total: -12.74 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -5.80 Total: -5.44 kcal Atomic # 7 Polarization: 1.50 SS G_CDS: -0.28 Total: 1.21 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.56 Total: -4.34 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: -5.08 Total: -5.53 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -8.04 -12.71 -20.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_4549614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.143 kcal (2) G-P(sol) polarization free energy of solvation -8.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds