Wall clock time and date at job start Sun Mar 7 2021 08:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47413 * 2 1 4 4 C 1.50700 * 109.47367 * 119.99974 * 2 1 3 5 5 C 1.38239 * 119.97684 * 244.97298 * 4 2 1 6 6 C 1.38288 * 120.11592 * 180.02562 * 5 4 2 7 7 C 1.38121 * 120.05209 * 0.02562 * 6 5 4 8 8 C 1.38755 * 119.94685 * 0.02562 * 7 6 5 9 9 O 1.35898 * 120.05301 * 180.02562 * 8 7 6 10 10 C 1.42899 * 117.00413 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47096 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.47319 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99539 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00344 * 180.02562 * 12 11 10 15 15 C 1.46495 * 119.99850 * 180.02562 * 14 12 11 16 16 H 1.08999 * 112.84913 * 334.65899 * 15 14 12 17 17 C 1.53778 * 113.61692 * 105.85998 * 15 14 12 18 18 C 1.53955 * 87.01986 * 139.95049 * 17 15 14 19 19 H 1.08997 * 113.54220 * 89.19173 * 18 17 15 20 20 C 1.50704 * 113.74386 * 220.05765 * 18 17 15 21 21 C 1.38240 * 119.99755 * 37.32367 * 20 18 17 22 22 C 1.38232 * 119.99899 * 179.77002 * 21 20 18 23 23 C 1.38244 * 119.99735 * 0.50269 * 22 21 20 24 24 C 1.38234 * 119.99847 * 359.75126 * 23 22 21 25 25 C 1.38229 * 120.00329 * 359.97438 * 24 23 22 26 26 C 1.53785 * 87.11329 * 334.63554 * 18 17 15 27 27 C 1.38170 * 119.97134 * 64.99873 * 4 2 1 28 28 H 0.96706 * 113.99914 * 299.99579 * 1 2 3 29 29 H 1.09003 * 109.46743 * 240.00257 * 2 1 3 30 30 H 1.48500 * 109.99933 * 300.00434 * 3 2 1 31 31 H 1.48500 * 109.99546 * 61.31999 * 3 2 1 32 32 H 1.08000 * 119.94311 * 0.02688 * 5 4 2 33 33 H 1.08001 * 119.97262 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.02567 * 180.26919 * 7 6 5 35 35 H 1.09007 * 109.46508 * 299.99479 * 10 9 8 36 36 H 1.08993 * 109.47492 * 59.99803 * 10 9 8 37 37 H 1.08998 * 109.47367 * 299.99562 * 11 10 9 38 38 H 1.09007 * 109.47448 * 59.99893 * 11 10 9 39 39 H 0.97000 * 119.99475 * 359.97438 * 14 12 11 40 40 H 1.09003 * 113.61671 * 254.52437 * 17 15 14 41 41 H 1.08996 * 113.61382 * 25.42953 * 17 15 14 42 42 H 1.07999 * 119.99824 * 359.97438 * 21 20 18 43 43 H 1.07998 * 120.00271 * 180.23189 * 22 21 20 44 44 H 1.07998 * 119.99820 * 179.72571 * 23 22 21 45 45 H 1.08005 * 119.99354 * 179.97438 * 24 23 22 46 46 H 1.07997 * 119.99920 * 179.97438 * 25 24 23 47 47 H 1.08997 * 113.61661 * 270.81398 * 26 18 17 48 48 H 1.09001 * 113.61424 * 139.90327 * 26 18 17 49 49 H 1.08005 * 120.02538 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6392 -0.0119 2.1907 6 6 3.1020 -0.6610 3.3206 7 6 2.8584 -2.0097 3.4922 8 6 2.1490 -2.7134 2.5294 9 8 1.9076 -4.0403 2.6962 10 6 2.4129 -4.6470 3.8873 11 6 2.0451 -6.1320 3.8987 12 6 2.5786 -6.7721 5.1545 13 8 3.1929 -6.1060 5.9607 14 7 2.3739 -8.0848 5.3812 15 6 2.8920 -8.7067 6.6022 16 1 3.7538 -8.1803 7.0124 17 6 1.8050 -9.0157 7.6452 18 6 2.5496 -10.3366 7.9117 19 1 3.3172 -10.2561 8.6814 20 6 1.6359 -11.5173 8.1179 21 6 0.4745 -11.6301 7.3767 22 6 -0.3612 -12.7155 7.5624 23 6 -0.0407 -13.6827 8.4967 24 6 1.1181 -13.5671 9.2415 25 6 1.9566 -12.4846 9.0518 26 6 3.0990 -10.2256 6.4797 27 6 1.6845 -2.0595 1.3977 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5138 -0.8901 30 1 1.5615 2.4679 -1.2084 31 1 1.5880 2.4585 1.2243 32 1 2.8311 1.0426 2.0581 33 1 3.6545 -0.1129 4.0695 34 1 3.2162 -2.5153 4.3769 35 1 3.4974 -4.5406 3.9171 36 1 1.9757 -4.1581 4.7578 37 1 0.9607 -6.2380 3.8690 38 1 2.4820 -6.6214 3.0281 39 1 1.8829 -8.6175 4.7362 40 1 1.8081 -8.3327 8.4946 41 1 0.8132 -9.1528 7.2146 42 1 0.2217 -10.8720 6.6502 43 1 -1.2666 -12.8056 6.9807 44 1 -0.6958 -14.5284 8.6449 45 1 1.3682 -14.3225 9.9717 46 1 2.8617 -12.3942 9.6340 47 1 2.4616 -10.6941 5.7299 48 1 4.1453 -10.5178 6.3896 49 1 1.1322 -2.6050 0.6468 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_4549614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:47 Heat of formation + Delta-G solvation = -25.573579 kcal Electronic energy + Delta-G solvation = -28987.426716 eV Core-core repulsion = 24847.000959 eV Total energy + Delta-G solvation = -4140.425757 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.59469 -41.25527 -40.37341 -39.21087 -38.66570 -37.38584 -34.79879 -33.28807 -32.49903 -31.85343 -31.60859 -30.76448 -27.16240 -26.72005 -26.41472 -24.91796 -23.69991 -23.57774 -22.53470 -21.93984 -21.47811 -20.30789 -19.36463 -18.24040 -18.19445 -17.70496 -17.49921 -17.14954 -17.00176 -16.86460 -16.42996 -16.24908 -16.00590 -15.83062 -15.51852 -15.33441 -14.95816 -14.76577 -14.46709 -14.35624 -14.22232 -14.13263 -14.00667 -13.88808 -13.46308 -13.25056 -13.15041 -12.94819 -12.85064 -12.54782 -12.40159 -12.31081 -11.96708 -11.83463 -11.81023 -11.66820 -11.56997 -11.46694 -10.99050 -10.65754 -10.10366 -9.96417 -9.81819 -9.55152 -9.28672 -4.90121 0.18603 0.38175 0.42962 0.50136 1.29531 1.49724 1.61826 1.71221 1.96582 2.50157 2.64579 2.83593 3.41332 3.45050 3.54773 3.63537 3.67292 3.72147 3.83339 3.88371 3.91286 3.97230 4.05369 4.08454 4.14388 4.18732 4.22510 4.27153 4.29420 4.39044 4.54050 4.55431 4.61839 4.63243 4.66535 4.70362 4.73554 4.76027 4.82671 4.96569 4.97104 5.00896 5.10570 5.17205 5.22106 5.25033 5.36908 5.42916 5.52696 5.58877 5.64636 5.69277 5.73663 6.12539 6.31818 6.46508 6.46819 7.14846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.087 4.087 3 Si 0.776 3.224 4 C -0.081 4.081 5 C -0.158 4.158 6 C -0.076 4.076 7 C -0.211 4.211 8 C 0.117 3.883 9 O -0.324 6.324 10 C 0.074 3.926 11 C -0.134 4.134 12 C 0.521 3.479 13 O -0.584 6.584 14 N -0.705 5.705 15 C 0.120 3.880 16 H 0.099 0.901 17 C -0.142 4.142 18 C -0.069 4.069 19 H 0.104 0.896 20 C -0.077 4.077 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.138 4.138 24 C -0.131 4.131 25 C -0.131 4.131 26 C -0.123 4.123 27 C -0.140 4.140 28 H 0.386 0.614 29 H 0.125 0.875 30 H -0.302 1.302 31 H -0.280 1.280 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.419 0.581 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.101 0.899 48 H 0.082 0.918 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 -3.144 -0.198 3.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.195 4.195 3 Si 0.681 3.319 4 C -0.082 4.082 5 C -0.176 4.176 6 C -0.093 4.093 7 C -0.229 4.229 8 C 0.071 3.929 9 O -0.238 6.238 10 C -0.001 4.001 11 C -0.173 4.173 12 C 0.308 3.692 13 O -0.464 6.464 14 N -0.356 5.356 15 C 0.015 3.985 16 H 0.117 0.883 17 C -0.180 4.180 18 C -0.088 4.088 19 H 0.122 0.878 20 C -0.077 4.077 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.156 4.156 24 C -0.149 4.149 25 C -0.149 4.149 26 C -0.161 4.161 27 C -0.159 4.159 28 H 0.235 0.765 29 H 0.143 0.857 30 H -0.230 1.230 31 H -0.207 1.207 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.154 0.846 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.256 0.744 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.148 0.852 47 H 0.119 0.881 48 H 0.101 0.899 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.516 -2.320 -0.300 2.787 hybrid contribution -1.290 -0.585 0.705 1.582 sum 0.226 -2.905 0.405 2.942 Atomic orbital electron populations 1.86577 1.18447 1.80487 1.50113 1.25342 0.83507 1.12284 0.98350 0.93866 0.90286 0.71412 0.76382 1.20153 0.97935 0.93281 0.96782 1.21204 1.00873 1.00769 0.94743 1.21239 0.97248 0.93399 0.97459 1.21553 1.04223 0.96563 1.00586 1.19146 0.95743 0.82973 0.94989 1.85952 1.74709 1.20319 1.42846 1.22438 0.99246 0.93053 0.85390 1.21450 1.05373 0.93510 0.96980 1.20650 0.78603 0.82596 0.87338 1.90735 1.42993 1.63495 1.49192 1.45856 1.57054 1.09046 1.23656 1.22474 0.97417 0.93357 0.85231 0.88320 1.23621 0.99181 0.96119 0.99120 1.21349 0.97280 0.91836 0.98362 0.87814 1.19798 0.95617 0.95872 0.96375 1.21216 0.94339 0.98506 1.00164 1.21442 1.00243 0.94483 0.98519 1.21456 0.97604 0.99849 0.96729 1.21426 0.94997 0.98490 0.99959 1.21323 1.00337 0.94609 0.98642 1.23386 1.02914 0.93456 0.96301 1.20338 1.03871 0.94338 0.97362 0.76456 0.85694 1.23024 1.20681 0.83617 0.83038 0.84605 0.91552 0.91844 0.85674 0.85494 0.74364 0.91729 0.88527 0.84617 0.84692 0.85031 0.85006 0.85176 0.88069 0.89910 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.10 12.83 -148.98 -1.91 -4.01 16 2 C -0.09 -0.05 2.80 71.24 0.20 0.15 16 3 Si 0.78 -1.32 29.88 68.60 2.05 0.73 16 4 C -0.08 -0.17 5.35 -19.88 -0.11 -0.27 16 5 C -0.16 -0.01 8.67 22.28 0.19 0.18 16 6 C -0.08 -0.04 10.04 22.25 0.22 0.19 16 7 C -0.21 -0.69 9.04 22.37 0.20 -0.48 16 8 C 0.12 0.63 6.69 22.51 0.15 0.78 16 9 O -0.32 -1.50 10.14 -92.40 -0.94 -2.43 16 10 C 0.07 0.11 4.03 71.98 0.29 0.40 16 11 C -0.13 0.54 6.07 29.85 0.18 0.72 16 12 C 0.52 0.25 7.83 87.66 0.69 0.93 16 13 O -0.58 -5.60 15.60 -3.06 -0.05 -5.64 16 14 N -0.70 3.27 5.36 -440.03 -2.36 0.91 16 15 C 0.12 -0.32 4.21 45.52 0.19 -0.13 16 16 H 0.10 0.16 7.50 -2.39 -0.02 0.14 16 17 C -0.14 0.37 7.27 31.18 0.23 0.60 16 18 C -0.07 0.22 3.97 -10.95 -0.04 0.18 16 19 H 0.10 -0.36 8.09 -2.39 -0.02 -0.38 16 20 C -0.08 0.04 5.29 -19.86 -0.11 -0.07 16 21 C -0.12 0.15 8.63 22.27 0.19 0.34 16 22 C -0.13 0.05 10.05 22.27 0.22 0.27 16 23 C -0.14 -0.08 10.05 22.27 0.22 0.15 16 24 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 25 C -0.13 -0.09 9.71 22.27 0.22 0.13 16 26 C -0.12 0.67 7.30 31.12 0.23 0.90 16 27 C -0.14 -0.69 9.62 22.37 0.22 -0.48 16 28 H 0.39 -0.69 8.70 -74.05 -0.64 -1.34 16 29 H 0.13 -0.12 7.96 -2.39 -0.02 -0.14 16 30 H -0.30 -1.77 7.11 99.48 0.71 -1.06 16 31 H -0.28 -0.46 7.01 99.48 0.70 0.24 16 32 H 0.15 -0.59 4.84 -2.91 -0.01 -0.60 16 33 H 0.15 -0.65 8.06 -2.91 -0.02 -0.68 16 34 H 0.14 0.25 6.30 -2.91 -0.02 0.23 16 35 H 0.07 0.17 7.62 -2.38 -0.02 0.15 16 36 H 0.06 0.19 7.62 -2.39 -0.02 0.17 16 37 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.13 -0.97 8.14 -2.38 -0.02 -0.99 16 39 H 0.42 -4.52 8.71 -92.71 -0.81 -5.33 16 40 H 0.06 0.00 8.14 -2.39 -0.02 -0.01 16 41 H 0.10 -0.39 6.32 -2.39 -0.02 -0.41 16 42 H 0.14 -0.71 6.66 -2.91 -0.02 -0.73 16 43 H 0.14 -0.52 8.06 -2.91 -0.02 -0.55 16 44 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 45 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 46 H 0.13 -0.27 8.05 -2.91 -0.02 -0.29 16 47 H 0.10 -0.75 7.70 -2.39 -0.02 -0.77 16 48 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 49 H 0.13 0.66 8.06 -2.91 -0.02 0.63 16 Total: 0.00 -19.83 403.52 0.16 -19.66 By element: Atomic # 1 Polarization: -13.36 SS G_CDS: -0.44 Total: -13.80 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 3.81 Total: 4.59 kcal Atomic # 7 Polarization: 3.27 SS G_CDS: -2.36 Total: 0.91 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -2.90 Total: -12.09 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: 2.05 Total: 0.73 kcal Total: -19.83 0.16 -19.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_4549614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.909 kcal (2) G-P(sol) polarization free energy of solvation -19.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds