Wall clock time and date at job start Sun Mar 7 2021 08:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47069 * 2 1 4 4 C 1.50706 * 109.46858 * 240.00435 * 2 1 3 5 5 C 1.38243 * 119.96823 * 120.01929 * 4 2 1 6 6 C 1.38290 * 120.10763 * 179.97438 * 5 4 2 7 7 C 1.38116 * 120.05620 * 359.68293 * 6 5 4 8 8 C 1.38759 * 119.94388 * 0.59034 * 7 6 5 9 9 O 1.35899 * 120.05640 * 179.70153 * 8 7 6 10 10 C 1.42899 * 117.00179 * 359.72952 * 9 8 7 11 11 C 1.52999 * 109.47160 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47156 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47178 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99662 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99875 * 180.02562 * 13 12 11 16 16 C 1.46496 * 119.99720 * 180.02562 * 15 13 12 17 17 H 1.09005 * 112.85211 * 23.80808 * 16 15 13 18 18 C 1.53787 * 113.61519 * 155.00064 * 16 15 13 19 19 C 1.53781 * 87.07987 * 139.98030 * 18 16 15 20 20 H 1.09002 * 113.61228 * 89.11929 * 19 18 16 21 21 C 1.50701 * 113.61206 * 219.93687 * 19 18 16 22 22 C 1.38233 * 120.00083 * 58.20248 * 21 19 18 23 23 C 1.38233 * 119.99897 * 179.74494 * 22 21 19 24 24 C 1.38237 * 120.00276 * 0.52594 * 23 22 21 25 25 C 1.38244 * 119.99751 * 359.74664 * 24 23 22 26 26 C 1.38236 * 119.99750 * 238.46972 * 21 19 18 27 27 C 1.53779 * 113.61356 * 252.49922 * 16 15 13 28 28 C 1.38160 * 119.97106 * 299.99765 * 4 2 1 29 29 H 0.96690 * 114.00388 * 59.99593 * 1 2 3 30 30 H 1.08998 * 109.47873 * 120.00202 * 2 1 3 31 31 H 1.48506 * 109.99764 * 60.00389 * 3 2 1 32 32 H 1.48494 * 110.00279 * 181.32050 * 3 2 1 33 33 H 1.07996 * 119.95278 * 359.97438 * 5 4 2 34 34 H 1.08004 * 119.97354 * 179.97438 * 6 5 4 35 35 H 1.08003 * 120.03071 * 180.32166 * 7 6 5 36 36 H 1.08996 * 109.47321 * 59.99647 * 10 9 8 37 37 H 1.09005 * 109.46940 * 299.99519 * 10 9 8 38 38 H 1.09004 * 109.47039 * 60.00383 * 11 10 9 39 39 H 1.08996 * 109.47626 * 300.00060 * 11 10 9 40 40 H 1.09004 * 109.46506 * 60.00458 * 12 11 10 41 41 H 1.08992 * 109.47162 * 300.00184 * 12 11 10 42 42 H 0.96999 * 119.99702 * 0.02562 * 15 13 12 43 43 H 1.09005 * 113.61051 * 25.43434 * 18 16 15 44 44 H 1.08993 * 113.61359 * 254.53472 * 18 16 15 45 45 H 1.07999 * 120.00092 * 359.97438 * 22 21 19 46 46 H 1.08000 * 120.00325 * 180.29672 * 23 22 21 47 47 H 1.08000 * 120.00458 * 179.77258 * 24 23 22 48 48 H 1.07990 * 119.99888 * 180.02562 * 25 24 23 49 49 H 1.08003 * 120.00417 * 0.02562 * 26 21 19 50 50 H 1.09003 * 113.61775 * 105.47767 * 27 16 15 51 51 H 1.08996 * 113.61960 * 334.56493 * 27 16 15 52 52 H 1.07997 * 120.02949 * 0.03867 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.7263 -0.0379 -2.1399 6 6 3.1893 -0.6871 -3.2698 7 6 2.8636 -2.0113 -3.4891 8 6 2.0610 -2.6868 -2.5808 9 8 1.7341 -3.9879 -2.7974 10 6 2.2468 -4.5968 -3.9842 11 6 1.7771 -6.0512 -4.0550 12 6 2.3255 -6.7029 -5.3261 13 6 1.8634 -8.1356 -5.3956 14 8 1.1640 -8.5905 -4.5153 15 7 2.2275 -8.9114 -6.4358 16 6 1.7779 -10.3040 -6.5036 17 1 0.8674 -10.4832 -5.9316 18 6 1.7272 -10.8661 -7.9342 19 6 2.2876 -12.1758 -7.3552 20 1 1.5171 -12.8680 -7.0155 21 6 3.3177 -12.8335 -8.2369 22 6 4.4635 -12.1466 -8.5920 23 6 5.4109 -12.7518 -9.3965 24 6 5.2073 -14.0400 -9.8548 25 6 4.0588 -14.7250 -9.5043 26 6 3.1141 -14.1217 -8.6951 27 6 2.8932 -11.3256 -6.2259 28 6 1.5972 -2.0331 -1.4487 29 1 -0.3933 0.4417 -0.7649 30 1 1.7925 -0.5138 0.8899 31 1 1.5615 2.4679 1.2086 32 1 3.5345 1.7704 -0.0322 33 1 2.9864 0.9960 -1.9677 34 1 3.8099 -0.1596 -3.9790 35 1 3.2296 -2.5194 -4.3691 36 1 3.3362 -4.5676 -3.9661 37 1 1.8832 -4.0543 -4.8570 38 1 0.6876 -6.0807 -4.0730 39 1 2.1409 -6.5934 -3.1823 40 1 3.4150 -6.6733 -5.3085 41 1 1.9613 -6.1606 -6.1986 42 1 2.7872 -8.5476 -7.1396 43 1 2.4080 -10.3669 -8.6238 44 1 0.7162 -10.9610 -8.3304 45 1 4.6204 -11.1385 -8.2379 46 1 6.3083 -12.2170 -9.6700 47 1 5.9457 -14.5116 -10.4863 48 1 3.8999 -15.7315 -9.8620 49 1 2.2167 -14.6568 -8.4216 50 1 2.8235 -11.7918 -5.2431 51 1 3.8927 -10.9522 -6.4485 52 1 0.9758 -2.5578 -0.7381 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:50 Heat of formation + Delta-G solvation = -33.490826 kcal Electronic energy + Delta-G solvation = -30519.261685 eV Core-core repulsion = 26222.954991 eV Total energy + Delta-G solvation = -4296.306694 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.51575 -41.24998 -40.36308 -39.20226 -38.70318 -37.29574 -34.91579 -34.66554 -32.44241 -31.88328 -31.66871 -31.17402 -28.49134 -26.87483 -26.71058 -25.82617 -23.78888 -23.63050 -23.46229 -22.27069 -21.81618 -21.44314 -20.29356 -19.17479 -18.20741 -18.09421 -17.80269 -17.46420 -17.17678 -16.95607 -16.78485 -16.48146 -16.35380 -16.11105 -15.82749 -15.42716 -15.34803 -15.06612 -14.75381 -14.72526 -14.29234 -14.24190 -14.19276 -14.15142 -13.92781 -13.46761 -13.35693 -13.29275 -13.07885 -13.03114 -12.74335 -12.51747 -12.32599 -12.29788 -12.24159 -11.97144 -11.80647 -11.67807 -11.61358 -11.58848 -11.46105 -10.88576 -10.50642 -10.05931 -9.90829 -9.81497 -9.54769 -9.23944 -4.98855 0.22164 0.41317 0.43161 0.50358 1.29945 1.60172 1.65019 1.91766 2.00648 2.41016 2.69217 2.83806 3.45745 3.50136 3.61684 3.67300 3.70004 3.72742 3.85510 3.88484 3.93113 3.98642 4.04491 4.11285 4.13500 4.16845 4.23725 4.25629 4.29805 4.35721 4.41225 4.42547 4.52341 4.56121 4.62271 4.63896 4.67282 4.71673 4.74595 4.82756 4.96562 4.99295 4.99990 5.01678 5.10899 5.15886 5.18135 5.24480 5.29691 5.39304 5.45904 5.56268 5.59148 5.64804 5.73877 5.75480 6.12748 6.43548 6.55292 6.74551 7.25993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.085 4.085 3 Si 0.793 3.207 4 C -0.085 4.085 5 C -0.161 4.161 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.116 3.884 9 O -0.340 6.340 10 C 0.058 3.942 11 C -0.102 4.102 12 C -0.127 4.127 13 C 0.508 3.492 14 O -0.591 6.591 15 N -0.707 5.707 16 C 0.118 3.882 17 H 0.093 0.907 18 C -0.122 4.122 19 C -0.070 4.070 20 H 0.101 0.899 21 C -0.077 4.077 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.138 4.138 25 C -0.131 4.131 26 C -0.132 4.132 27 C -0.141 4.141 28 C -0.153 4.153 29 H 0.395 0.605 30 H 0.101 0.899 31 H -0.300 1.300 32 H -0.281 1.281 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.419 0.581 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.132 0.868 48 H 0.131 0.869 49 H 0.129 0.871 50 H 0.061 0.939 51 H 0.098 0.902 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 3.311 -9.703 11.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.193 4.193 3 Si 0.698 3.302 4 C -0.085 4.085 5 C -0.178 4.178 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.071 3.929 9 O -0.254 6.254 10 C -0.016 4.016 11 C -0.140 4.140 12 C -0.167 4.167 13 C 0.296 3.704 14 O -0.472 6.472 15 N -0.359 5.359 16 C 0.013 3.987 17 H 0.111 0.889 18 C -0.160 4.160 19 C -0.089 4.089 20 H 0.119 0.881 21 C -0.077 4.077 22 C -0.141 4.141 23 C -0.146 4.146 24 C -0.156 4.156 25 C -0.149 4.149 26 C -0.150 4.150 27 C -0.179 4.179 28 C -0.172 4.172 29 H 0.245 0.755 30 H 0.119 0.881 31 H -0.229 1.229 32 H -0.208 1.208 33 H 0.165 0.835 34 H 0.178 0.822 35 H 0.172 0.828 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.257 0.743 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.150 0.850 48 H 0.149 0.851 49 H 0.146 0.854 50 H 0.079 0.921 51 H 0.117 0.883 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.542 3.120 -8.020 9.731 hybrid contribution 0.124 -1.155 0.235 1.185 sum 4.666 1.966 -7.785 9.287 Atomic orbital electron populations 1.86468 1.17363 1.82294 1.50452 1.25401 0.85303 1.11768 0.96863 0.93509 0.77747 0.74341 0.84557 1.20212 0.97835 0.93454 0.97014 1.21191 1.00435 1.00758 0.95429 1.21317 0.97335 0.93526 0.96788 1.21608 1.02617 0.96872 1.01324 1.19208 0.95207 0.83559 0.94945 1.86055 1.71679 1.22888 1.44814 1.22996 0.99610 0.93120 0.85896 1.21157 1.01591 0.93002 0.98296 1.21544 1.04629 0.90595 0.99913 1.21240 0.78911 0.89247 0.80959 1.90735 1.39939 1.76282 1.40211 1.45894 1.53207 1.11690 1.25095 1.22422 0.97959 0.80196 0.98150 0.88890 1.23389 1.02786 0.94497 0.95299 1.21315 0.96636 0.95725 0.95231 0.88101 1.19795 0.95668 0.94319 0.97908 1.21211 0.93708 1.00706 0.98501 1.21448 0.99836 0.95515 0.97783 1.21461 0.98062 0.95514 1.00574 1.21423 0.94503 1.00673 0.98289 1.21323 0.99947 0.95277 0.98489 1.23582 0.99509 0.96385 0.98454 1.20313 1.04240 0.94954 0.97689 0.75465 0.88111 1.22876 1.20760 0.83456 0.82241 0.82841 0.89916 0.89637 0.92200 0.92385 0.85428 0.85274 0.74342 0.87821 0.90155 0.84458 0.84519 0.84980 0.85061 0.85352 0.92063 0.88318 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.79 12.77 -148.98 -1.90 -3.69 16 2 C -0.08 -0.17 2.82 71.24 0.20 0.03 16 3 Si 0.79 -1.38 29.79 68.60 2.04 0.66 16 4 C -0.08 -0.23 5.39 -19.88 -0.11 -0.34 16 5 C -0.16 0.20 8.67 22.28 0.19 0.40 16 6 C -0.07 0.21 10.04 22.25 0.22 0.43 16 7 C -0.21 0.17 9.04 22.37 0.20 0.37 16 8 C 0.12 0.59 6.69 22.51 0.15 0.74 16 9 O -0.34 -2.15 10.14 -92.41 -0.94 -3.08 16 10 C 0.06 -0.14 4.74 71.98 0.34 0.20 16 11 C -0.10 -0.02 4.87 30.60 0.15 0.13 16 12 C -0.13 0.87 5.70 29.85 0.17 1.04 16 13 C 0.51 0.55 7.83 87.66 0.69 1.24 16 14 O -0.59 -7.36 15.58 -3.04 -0.05 -7.41 16 15 N -0.71 3.15 5.35 -440.03 -2.36 0.79 16 16 C 0.12 -0.19 4.24 45.52 0.19 0.00 16 17 H 0.09 0.35 7.47 -2.38 -0.02 0.33 16 18 C -0.12 0.60 7.29 31.12 0.23 0.83 16 19 C -0.07 0.17 3.98 -11.01 -0.04 0.13 16 20 H 0.10 -0.23 8.09 -2.39 -0.02 -0.25 16 21 C -0.08 0.02 5.29 -19.87 -0.11 -0.09 16 22 C -0.12 0.19 8.53 22.27 0.19 0.38 16 23 C -0.13 0.11 10.05 22.27 0.22 0.33 16 24 C -0.14 -0.04 10.05 22.27 0.22 0.18 16 25 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 26 C -0.13 -0.13 9.71 22.27 0.22 0.08 16 27 C -0.14 0.26 7.26 31.12 0.23 0.49 16 28 C -0.15 -1.03 9.55 22.36 0.21 -0.82 16 29 H 0.40 -2.10 8.70 -74.06 -0.64 -2.75 16 30 H 0.10 0.40 7.96 -2.39 -0.02 0.39 16 31 H -0.30 -1.75 7.11 99.48 0.71 -1.05 16 32 H -0.28 -0.58 7.11 99.48 0.71 0.13 16 33 H 0.15 -0.87 4.87 -2.91 -0.01 -0.88 16 34 H 0.16 -1.43 8.06 -2.91 -0.02 -1.46 16 35 H 0.15 -0.99 6.30 -2.91 -0.02 -1.01 16 36 H 0.08 -0.52 7.65 -2.39 -0.02 -0.54 16 37 H 0.09 -0.57 7.68 -2.38 -0.02 -0.59 16 38 H 0.06 0.29 8.10 -2.39 -0.02 0.27 16 39 H 0.06 0.29 8.10 -2.39 -0.02 0.28 16 40 H 0.13 -1.57 8.14 -2.39 -0.02 -1.59 16 41 H 0.13 -1.62 8.14 -2.39 -0.02 -1.64 16 42 H 0.42 -4.86 8.73 -92.71 -0.81 -5.67 16 43 H 0.10 -0.79 7.60 -2.38 -0.02 -0.80 16 44 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H 0.14 -0.82 6.73 -2.91 -0.02 -0.84 16 46 H 0.14 -0.63 8.06 -2.91 -0.02 -0.66 16 47 H 0.13 -0.37 8.06 -2.91 -0.02 -0.40 16 48 H 0.13 -0.26 8.06 -2.92 -0.02 -0.29 16 49 H 0.13 -0.18 8.05 -2.91 -0.02 -0.21 16 50 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 51 H 0.10 -0.38 6.41 -2.39 -0.02 -0.40 16 52 H 0.11 1.08 8.06 -2.91 -0.02 1.05 16 Total: 0.00 -26.09 424.90 0.32 -25.77 By element: Atomic # 1 Polarization: -18.41 SS G_CDS: -0.47 Total: -18.89 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 4.00 Total: 5.85 kcal Atomic # 7 Polarization: 3.15 SS G_CDS: -2.36 Total: 0.79 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -2.89 Total: -14.18 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: 2.04 Total: 0.66 kcal Total: -26.09 0.32 -25.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.722 kcal (2) G-P(sol) polarization free energy of solvation -26.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds