Wall clock time and date at job start Sun Mar 7 2021 08:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50702 * 109.47007 * 239.99614 * 2 1 3 5 5 C 1.38273 * 119.94059 * 119.73091 * 4 2 1 6 6 C 1.38148 * 120.05257 * 179.72295 * 5 4 2 7 7 C 1.38728 * 119.94478 * 0.57359 * 6 5 4 8 8 O 1.35894 * 120.05711 * 179.68257 * 7 6 5 9 9 C 1.42904 * 116.99852 * 0.02562 * 8 7 6 10 10 C 1.50702 * 109.47002 * 180.02562 * 9 8 7 11 11 C 1.36415 * 125.80010 * 89.72465 * 10 9 8 12 12 C 1.47373 * 127.19128 * 359.97438 * 11 10 9 13 13 O 1.21609 * 120.00545 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99861 * 180.02562 * 12 11 10 15 15 C 1.46494 * 120.00134 * 180.02562 * 14 12 11 16 16 H 1.09002 * 112.85105 * 25.33228 * 15 14 12 17 17 C 1.53778 * 113.61718 * 156.52442 * 15 14 12 18 18 C 1.53779 * 87.08363 * 139.98228 * 17 15 14 19 19 H 1.08999 * 113.61815 * 89.19833 * 18 17 15 20 20 C 1.50704 * 113.61894 * 220.02397 * 18 17 15 21 21 C 1.38237 * 119.99839 * 59.72190 * 20 18 17 22 22 C 1.38229 * 119.99832 * 179.79167 * 21 20 18 23 23 C 1.38243 * 120.00004 * 0.44124 * 22 21 20 24 24 C 1.38229 * 119.99615 * 359.80902 * 23 22 21 25 25 C 1.38227 * 119.99933 * 239.99638 * 20 18 17 26 26 C 1.53779 * 113.61594 * 254.13774 * 15 14 12 27 27 C 1.47022 * 105.61245 * 179.86812 * 11 10 9 28 28 C 1.34176 * 105.95583 * 0.38968 * 27 11 10 29 29 O 1.33659 * 125.79917 * 270.02426 * 10 9 8 30 30 C 1.38729 * 119.88797 * 359.69691 * 7 6 5 31 31 C 1.38143 * 119.94821 * 0.02562 * 30 7 6 32 32 H 0.96700 * 113.99509 * 59.99951 * 1 2 3 33 33 H 1.09004 * 109.46926 * 120.00048 * 2 1 3 34 34 H 1.48498 * 109.99634 * 298.68172 * 3 2 1 35 35 H 1.48502 * 109.99691 * 59.99915 * 3 2 1 36 36 H 1.07998 * 119.96907 * 359.97438 * 5 4 2 37 37 H 1.07995 * 120.02305 * 180.29534 * 6 5 4 38 38 H 1.08993 * 109.47571 * 300.00351 * 9 8 7 39 39 H 1.09006 * 109.46443 * 60.00777 * 9 8 7 40 40 H 0.97004 * 119.99643 * 359.97438 * 14 12 11 41 41 H 1.08995 * 113.61952 * 254.53236 * 17 15 14 42 42 H 1.09003 * 113.61448 * 25.35513 * 17 15 14 43 43 H 1.08001 * 119.99776 * 0.02562 * 21 20 18 44 44 H 1.08003 * 120.00402 * 180.28073 * 22 21 20 45 45 H 1.08000 * 119.99704 * 179.83682 * 23 22 21 46 46 H 1.08010 * 119.99874 * 179.97438 * 24 23 22 47 47 H 1.08007 * 120.00130 * 359.97438 * 25 20 18 48 48 H 1.09004 * 113.61156 * 334.56457 * 26 15 14 49 49 H 1.08999 * 113.61768 * 105.46894 * 26 15 14 50 50 H 1.07997 * 127.02159 * 180.11135 * 27 11 10 51 51 H 1.08005 * 125.44038 * 179.79987 * 28 27 11 52 52 H 1.08004 * 120.03160 * 179.97438 * 30 7 6 53 53 H 1.07997 * 119.97777 * 180.02562 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7216 -0.0358 -2.1427 6 6 3.1881 -0.6865 -3.2685 7 6 2.8532 -2.0145 -3.4894 8 8 3.3055 -2.6549 -4.5994 9 6 4.1222 -1.8998 -5.4966 10 6 4.5257 -2.7682 -6.6602 11 6 3.8334 -2.9114 -7.8268 12 6 2.5636 -2.2602 -8.1949 13 8 2.0223 -1.4992 -7.4160 14 7 2.0021 -2.5081 -9.3948 15 6 0.7402 -1.8604 -9.7610 16 1 0.5789 -0.9197 -9.2344 17 6 0.5156 -1.7628 -11.2791 18 6 -0.9571 -2.1101 -11.0043 19 1 -1.5841 -1.2380 -10.8188 20 6 -1.5534 -3.0553 -12.0154 21 6 -1.0030 -4.3103 -12.1970 22 6 -1.5526 -5.1788 -13.1213 23 6 -2.6470 -4.7890 -13.8705 24 6 -3.1942 -3.5321 -13.6925 25 6 -2.6472 -2.6652 -12.7651 26 6 -0.4722 -2.8055 -9.7191 27 6 4.6200 -3.8493 -8.6412 28 6 5.6857 -4.1805 -7.8963 29 8 5.6200 -3.5332 -6.7224 30 6 2.0555 -2.6875 -2.5755 31 6 1.5963 -2.0342 -1.4483 32 1 -0.3932 0.4417 -0.7651 33 1 1.7923 -0.5139 0.8900 34 1 1.5880 2.4585 -1.2242 35 1 1.5616 2.4678 1.2085 36 1 2.9777 0.9995 -1.9728 37 1 3.8092 -0.1604 -3.9783 38 1 3.5611 -1.0401 -5.8627 39 1 5.0142 -1.5554 -4.9732 40 1 2.4341 -3.1149 -10.0163 41 1 0.6602 -0.7590 -11.6784 42 1 1.0463 -2.5255 -11.8490 43 1 -0.1459 -4.6135 -11.6140 44 1 -1.1254 -6.1610 -13.2600 45 1 -3.0748 -5.4666 -14.5945 46 1 -4.0490 -3.2274 -14.2781 47 1 -3.0748 -1.6831 -12.6260 48 1 -0.2131 -3.8547 -9.8614 49 1 -1.1238 -2.6421 -8.8607 50 1 4.3855 -4.2031 -9.6343 51 1 6.4714 -4.8592 -8.1940 52 1 1.7930 -3.7213 -2.7454 53 1 0.9757 -2.5578 -0.7363 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_4549634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:02 Heat of formation + Delta-G solvation = 2.607263 kcal Electronic energy + Delta-G solvation = -36680.947131 eV Core-core repulsion = 31838.382773 eV Total energy + Delta-G solvation = -4842.564358 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.166 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -43.71914 -41.45223 -41.30580 -40.21771 -39.27980 -38.66547 -37.32006 -34.96328 -33.92160 -32.85661 -31.99200 -31.85494 -31.59131 -31.40559 -28.05951 -26.74356 -26.44817 -26.05782 -24.47933 -23.81302 -23.57893 -22.69944 -22.37336 -21.75326 -21.25109 -20.22640 -19.52055 -19.09971 -18.37940 -18.19080 -17.47252 -17.22664 -17.07963 -16.98554 -16.71636 -16.47240 -16.34847 -16.14956 -15.96139 -15.85706 -15.65811 -15.42729 -15.28030 -14.77680 -14.63926 -14.41067 -14.31207 -14.26793 -14.14485 -14.03620 -13.79026 -13.58113 -13.51883 -13.48715 -13.15184 -13.12447 -12.55306 -12.33613 -12.32040 -12.13670 -12.10368 -11.83491 -11.68314 -11.65683 -11.48212 -11.09746 -10.97121 -10.61108 -10.15358 -10.06575 -9.83210 -9.81878 -9.55663 -9.25858 -4.93029 -0.04733 0.25187 0.28139 0.42566 0.49837 1.03096 1.31994 1.51484 1.60287 1.95285 2.04507 2.13281 2.46075 2.62534 2.83132 3.34126 3.41955 3.42061 3.57753 3.66007 3.68119 3.70008 3.73460 3.78211 3.89812 3.90916 3.93612 4.03936 4.10331 4.13385 4.16966 4.27944 4.28838 4.40810 4.45652 4.50742 4.54704 4.60431 4.61577 4.67660 4.69475 4.72555 4.80249 4.81017 4.94152 4.94536 4.98713 5.09247 5.13005 5.16024 5.20210 5.23900 5.26816 5.45523 5.49758 5.58417 5.64200 5.67400 5.73038 5.88600 6.12099 6.24590 6.44124 6.47766 7.09596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.078 4.078 3 Si 0.766 3.234 4 C -0.158 4.158 5 C -0.076 4.076 6 C -0.205 4.205 7 C 0.125 3.875 8 O -0.323 6.323 9 C 0.135 3.865 10 C 0.040 3.960 11 C -0.225 4.225 12 C 0.584 3.416 13 O -0.573 6.573 14 N -0.696 5.696 15 C 0.121 3.879 16 H 0.100 0.900 17 C -0.121 4.121 18 C -0.067 4.067 19 H 0.105 0.895 20 C -0.077 4.077 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.138 4.138 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.143 4.143 27 C -0.197 4.197 28 C -0.012 4.012 29 O -0.177 6.177 30 C -0.163 4.163 31 C -0.057 4.057 32 H 0.385 0.615 33 H 0.126 0.874 34 H -0.285 1.285 35 H -0.302 1.302 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.415 0.585 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.130 0.870 48 H 0.094 0.906 49 H 0.062 0.938 50 H 0.192 0.808 51 H 0.252 0.748 52 H 0.132 0.868 53 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.265 -1.728 -5.877 8.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.186 4.186 3 Si 0.672 3.328 4 C -0.159 4.159 5 C -0.093 4.093 6 C -0.224 4.224 7 C 0.080 3.920 8 O -0.237 6.237 9 C 0.060 3.940 10 C -0.013 4.013 11 C -0.229 4.229 12 C 0.372 3.628 13 O -0.454 6.454 14 N -0.347 5.347 15 C 0.017 3.983 16 H 0.118 0.882 17 C -0.158 4.158 18 C -0.086 4.086 19 H 0.123 0.877 20 C -0.077 4.077 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.155 4.155 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.181 4.181 27 C -0.216 4.216 28 C -0.077 4.077 29 O -0.072 6.072 30 C -0.182 4.182 31 C -0.075 4.075 32 H 0.234 0.766 33 H 0.144 0.856 34 H -0.212 1.212 35 H -0.230 1.230 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.253 0.747 41 H 0.103 0.897 42 H 0.120 0.880 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.148 0.852 48 H 0.113 0.887 49 H 0.081 0.919 50 H 0.209 0.791 51 H 0.268 0.732 52 H 0.150 0.850 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.953 -0.902 -4.647 6.851 hybrid contribution -1.244 -0.441 -1.036 1.678 sum 3.708 -1.342 -5.683 6.918 Atomic orbital electron populations 1.86559 1.18723 1.80356 1.50123 1.25183 0.83261 1.11703 0.98501 0.94154 0.90326 0.72061 0.76280 1.20289 1.01943 0.95324 0.98314 1.21021 0.95623 1.00012 0.92653 1.21412 1.06079 0.93713 1.01156 1.19180 0.94631 0.91907 0.86318 1.86048 1.65297 1.40663 1.31696 1.21150 0.95453 0.91215 0.86133 1.22061 0.87092 0.95960 0.96152 1.21400 0.98401 1.05857 0.97273 1.17491 0.83196 0.80143 0.81948 1.90771 1.64616 1.38517 1.51483 1.45657 1.24381 1.47818 1.16858 1.22521 0.82327 0.96896 0.96596 0.88179 1.23379 0.94626 1.03842 0.93998 1.21332 0.96094 0.97709 0.93433 0.87689 1.19782 0.95867 0.94991 0.97045 1.21204 1.00698 0.93572 0.98778 1.21435 0.96589 1.00356 0.96245 1.21455 0.96975 0.96896 1.00221 1.21428 1.00446 0.94380 0.98581 1.21316 0.96511 1.00393 0.96592 1.23627 0.96990 1.00095 0.97412 1.23247 0.95301 1.00270 1.02754 1.24916 1.02100 0.98501 0.82196 1.83797 1.38900 1.46762 1.37761 1.20623 1.01208 1.01422 0.94920 1.20936 0.96954 0.93891 0.95761 0.76592 0.85593 1.21208 1.23000 0.83303 0.83420 0.87610 0.87918 0.74725 0.89650 0.88019 0.84791 0.84652 0.84961 0.84960 0.85160 0.88717 0.91906 0.79112 0.73186 0.84979 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.52 12.77 -148.98 -1.90 -4.42 16 2 C -0.08 -0.10 2.82 71.24 0.20 0.10 16 3 Si 0.77 -0.40 29.78 68.60 2.04 1.64 16 4 C -0.16 -0.45 5.39 -19.85 -0.11 -0.56 16 5 C -0.08 -0.13 8.66 22.26 0.19 0.06 16 6 C -0.21 -0.77 9.04 22.37 0.20 -0.57 16 7 C 0.12 0.96 6.69 22.50 0.15 1.11 16 8 O -0.32 -3.05 10.12 -92.36 -0.93 -3.99 16 9 C 0.13 0.66 4.73 71.24 0.34 1.00 16 10 C 0.04 0.20 7.00 25.26 0.18 0.38 16 11 C -0.22 -0.81 6.31 -18.99 -0.12 -0.93 16 12 C 0.58 3.60 7.81 86.65 0.68 4.28 16 13 O -0.57 -7.67 14.47 -4.06 -0.06 -7.73 16 14 N -0.70 0.49 5.36 -443.36 -2.38 -1.89 16 15 C 0.12 -0.06 4.21 45.52 0.19 0.13 16 16 H 0.10 0.36 7.50 -2.39 -0.02 0.34 16 17 C -0.12 0.52 7.29 31.12 0.23 0.75 16 18 C -0.07 0.14 3.98 -10.95 -0.04 0.10 16 19 H 0.10 -0.27 8.09 -2.39 -0.02 -0.29 16 20 C -0.08 -0.02 5.29 -19.87 -0.11 -0.12 16 21 C -0.12 0.06 8.60 22.27 0.19 0.26 16 22 C -0.13 0.00 10.05 22.27 0.22 0.22 16 23 C -0.14 -0.11 10.05 22.27 0.22 0.12 16 24 C -0.13 -0.15 10.05 22.27 0.22 0.08 16 25 C -0.13 -0.14 9.71 22.27 0.22 0.07 16 26 C -0.14 0.07 7.27 31.18 0.23 0.30 16 27 C -0.20 0.78 10.60 23.65 0.25 1.03 16 28 C -0.01 0.05 12.03 66.89 0.80 0.86 16 29 O -0.18 -0.41 10.52 4.41 0.05 -0.37 16 30 C -0.16 -1.12 9.99 22.36 0.22 -0.90 16 31 C -0.06 -0.27 9.60 22.25 0.21 -0.05 16 32 H 0.38 -0.17 8.70 -74.06 -0.64 -0.81 16 33 H 0.13 -0.09 7.96 -2.38 -0.02 -0.11 16 34 H -0.29 -1.03 7.10 99.48 0.71 -0.32 16 35 H -0.30 -2.10 7.11 99.48 0.71 -1.39 16 36 H 0.15 -0.44 4.87 -2.91 -0.01 -0.46 16 37 H 0.15 -0.05 6.30 -2.91 -0.02 -0.07 16 38 H 0.11 0.65 6.02 -2.39 -0.01 0.64 16 39 H 0.10 -0.02 7.66 -2.38 -0.02 -0.04 16 40 H 0.42 -2.81 7.88 -92.71 -0.73 -3.54 16 41 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.10 -0.66 7.69 -2.39 -0.02 -0.68 16 43 H 0.13 -0.56 6.68 -2.91 -0.02 -0.58 16 44 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 45 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 46 H 0.13 -0.26 8.06 -2.91 -0.02 -0.29 16 47 H 0.13 -0.21 8.06 -2.91 -0.02 -0.24 16 48 H 0.09 -0.15 6.34 -2.38 -0.02 -0.17 16 49 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 50 H 0.19 -2.13 7.74 -2.91 -0.02 -2.16 16 51 H 0.25 -3.45 8.06 -2.91 -0.02 -3.48 16 52 H 0.13 0.76 8.06 -2.91 -0.02 0.74 16 53 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 Total: 0.00 -23.99 440.53 1.24 -22.75 By element: Atomic # 1 Polarization: -13.34 SS G_CDS: -0.36 Total: -13.70 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 4.78 Total: 7.70 kcal Atomic # 7 Polarization: 0.49 SS G_CDS: -2.38 Total: -1.89 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -2.85 Total: -16.51 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: 2.04 Total: 1.64 kcal Total: -23.99 1.24 -22.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_4549634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.359 kcal (2) G-P(sol) polarization free energy of solvation -23.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds