Wall clock time and date at job start Sun Mar 7 2021 08:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35991 * 116.99544 * 2 1 4 4 C 1.39162 * 120.06939 * 179.97438 * 3 2 1 5 5 O 1.35993 * 120.06914 * 359.97438 * 4 3 2 6 6 C 1.42906 * 116.99488 * 179.72832 * 5 4 3 7 7 C 1.50706 * 109.46699 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00042 * 359.71986 * 7 6 5 9 9 N 1.34777 * 119.99766 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00266 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.84436 * 23.80614 * 10 9 7 12 12 C 1.53772 * 113.61598 * 155.00257 * 10 9 7 13 13 C 1.53780 * 87.08584 * 139.98595 * 12 10 9 14 14 H 1.09002 * 113.61834 * 89.19594 * 13 12 10 15 15 C 1.50696 * 113.61934 * 220.02373 * 13 12 10 16 16 C 1.38233 * 120.00133 * 59.71937 * 15 13 12 17 17 C 1.38236 * 120.00061 * 179.77452 * 16 15 13 18 18 C 1.38238 * 119.99898 * 0.48081 * 17 16 15 19 19 C 1.38234 * 119.99659 * 359.79186 * 18 17 16 20 20 C 1.38234 * 120.00545 * 359.96158 * 19 18 17 21 21 C 1.53775 * 113.61694 * 252.50238 * 10 9 7 22 22 C 1.38560 * 119.85493 * 179.72020 * 4 3 2 23 23 C 1.38251 * 119.99825 * 0.28034 * 22 4 3 24 24 N 1.48003 * 119.92615 * 180.02562 * 23 22 4 25 25 O 1.21804 * 120.00158 * 359.97438 * 24 23 22 26 26 O 1.21796 * 119.99931 * 179.97438 * 24 23 22 27 27 C 1.38248 * 120.14416 * 0.02562 * 23 22 4 28 28 C 1.50703 * 119.92571 * 179.97438 * 27 23 22 29 29 O 1.42897 * 109.47040 * 74.99844 * 28 27 23 30 30 Si 1.86301 * 109.47103 * 195.00294 * 28 27 23 31 31 C 1.38243 * 120.15196 * 359.97438 * 27 23 22 32 32 H 1.09003 * 109.46807 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46806 * 300.00075 * 1 2 3 34 34 H 1.08990 * 109.47014 * 60.00532 * 1 2 3 35 35 H 1.09000 * 109.47490 * 59.99653 * 6 5 4 36 36 H 1.09001 * 109.47232 * 299.99007 * 6 5 4 37 37 H 0.96999 * 120.00043 * 0.02562 * 9 7 6 38 38 H 1.09008 * 113.61805 * 254.53516 * 12 10 9 39 39 H 1.09001 * 113.61778 * 25.43240 * 12 10 9 40 40 H 1.08006 * 119.99950 * 0.02562 * 16 15 13 41 41 H 1.07999 * 120.00347 * 180.25018 * 17 16 15 42 42 H 1.08000 * 119.99858 * 179.77173 * 18 17 16 43 43 H 1.08000 * 119.99817 * 179.97438 * 19 18 17 44 44 H 1.07994 * 120.00446 * 179.97438 * 20 19 18 45 45 H 1.09004 * 113.61935 * 334.56468 * 21 10 9 46 46 H 1.09009 * 113.61608 * 105.47125 * 21 10 9 47 47 H 1.07997 * 120.00458 * 180.25478 * 22 4 3 48 48 H 1.09009 * 109.46919 * 315.00020 * 28 27 23 49 49 H 0.96698 * 114.00365 * 60.00431 * 29 28 27 50 50 H 1.48508 * 109.99783 * 179.97438 * 30 28 27 51 51 H 1.48501 * 109.99892 * 301.31487 * 30 28 27 52 52 H 1.07996 * 120.00397 * 180.02562 * 31 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2864 0.0005 5 8 4.1795 0.1477 0.0016 6 6 5.6004 0.3007 -0.0039 7 6 6.2519 -1.0582 -0.0012 8 8 5.5671 -2.0590 0.0100 9 7 7.5957 -1.1612 -0.0061 10 6 8.2292 -2.4821 -0.0028 11 1 7.5819 -3.2628 -0.4024 12 6 9.6446 -2.4880 -0.6038 13 6 10.0341 -3.4590 0.5233 14 1 9.8821 -4.5078 0.2681 15 6 11.3971 -3.1904 1.1074 16 6 11.6706 -1.9671 1.6900 17 6 12.9194 -1.7224 2.2300 18 6 13.8978 -2.6976 2.1784 19 6 13.6261 -3.9189 1.5907 20 6 12.3757 -4.1654 1.0553 21 6 8.8828 -2.8486 1.3400 22 6 4.0603 2.5233 -0.0053 23 6 3.3029 3.6799 -0.0058 24 7 3.9715 5.0003 -0.0127 25 8 5.1876 5.0672 -0.0174 26 8 3.3055 6.0201 -0.0136 27 6 1.9224 3.6057 0.0000 28 6 1.1016 4.8696 0.0000 29 8 1.1293 5.4555 -1.3030 30 14 -0.6576 4.4676 0.4630 31 6 1.2932 2.3748 0.0059 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8900 35 1 5.9098 0.8534 0.8831 36 1 5.9034 0.8475 -0.8969 37 1 8.1435 -0.3607 -0.0109 38 1 9.6949 -2.9310 -1.5985 39 1 10.1488 -1.5236 -0.5430 40 1 10.9073 -1.2039 1.7270 41 1 13.1318 -0.7681 2.6888 42 1 14.8746 -2.5051 2.5970 43 1 14.3906 -4.6806 1.5501 44 1 12.1635 -5.1194 0.5958 45 1 9.1788 -1.9828 1.9323 46 1 8.3180 -3.5828 1.9146 47 1 5.1386 2.5840 -0.0091 48 1 1.5162 5.5721 0.7232 49 1 0.7745 4.8850 -1.9985 50 1 -1.4773 5.7059 0.4672 51 1 -1.2238 3.4863 -0.4971 52 1 0.2147 2.3196 0.0100 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_4549636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:06 Heat of formation + Delta-G solvation = -37.892647 kcal Electronic energy + Delta-G solvation = -38909.340839 eV Core-core repulsion = 33618.682259 eV Total energy + Delta-G solvation = -5290.658580 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 415.160 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -43.38605 -42.12804 -41.51514 -40.58306 -39.65325 -39.26396 -38.60090 -37.72076 -37.23300 -34.87829 -32.70232 -32.58178 -31.89223 -31.67909 -29.83608 -28.79822 -27.92153 -26.71091 -26.14490 -25.58190 -23.94759 -23.57056 -23.22851 -22.50781 -21.72861 -20.77899 -20.41850 -19.81318 -19.54153 -18.77123 -18.65193 -18.45418 -18.06193 -17.75112 -17.66841 -17.38468 -16.91849 -16.85425 -16.50973 -16.38694 -16.20459 -15.95148 -15.68664 -15.54209 -15.26251 -15.10549 -14.83215 -14.48770 -14.31164 -14.20154 -13.97261 -13.90079 -13.77357 -13.46780 -13.45228 -13.15270 -13.06098 -12.70100 -12.55647 -12.48966 -12.47607 -12.37376 -12.30300 -12.24551 -12.11371 -11.81809 -11.70741 -11.66855 -11.46562 -11.01142 -10.65149 -10.48813 -10.16393 -9.80413 -9.54090 -9.49943 -5.00579 -1.35185 -0.44229 0.17426 0.31594 0.44192 0.51491 1.13090 1.25451 1.37828 1.46153 1.86810 1.88078 1.93378 2.36086 2.84798 2.97361 3.16284 3.25587 3.40909 3.43957 3.47593 3.52109 3.66552 3.73244 3.87560 3.92171 3.93469 3.97324 4.05406 4.06271 4.09268 4.15112 4.19228 4.24742 4.30599 4.31524 4.37407 4.55298 4.59337 4.63105 4.69038 4.71459 4.73832 4.76303 4.83345 4.96119 5.01748 5.09748 5.17142 5.20874 5.27491 5.47453 5.58445 5.60145 5.66051 5.74639 6.04024 6.13831 6.39957 6.42705 6.49368 7.07671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.307 6.307 3 C 0.169 3.831 4 C 0.102 3.898 5 O -0.291 6.291 6 C 0.026 3.974 7 C 0.517 3.483 8 O -0.567 6.567 9 N -0.699 5.699 10 C 0.122 3.878 11 H 0.099 0.901 12 C -0.122 4.122 13 C -0.069 4.069 14 H 0.103 0.897 15 C -0.076 4.076 16 C -0.124 4.124 17 C -0.129 4.129 18 C -0.139 4.139 19 C -0.131 4.131 20 C -0.131 4.131 21 C -0.141 4.141 22 C -0.109 4.109 23 C -0.043 4.043 24 N 0.036 4.964 25 O -0.188 6.188 26 O -0.162 6.162 27 C -0.034 4.034 28 C -0.102 4.102 29 O -0.529 6.529 30 Si 0.774 3.226 31 C -0.172 4.172 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.421 0.579 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.100 0.900 46 H 0.065 0.935 47 H 0.184 0.816 48 H 0.129 0.871 49 H 0.383 0.617 50 H -0.294 1.294 51 H -0.250 1.250 52 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 -3.032 1.590 3.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.218 6.218 3 C 0.120 3.880 4 C 0.055 3.945 5 O -0.203 6.203 6 C -0.052 4.052 7 C 0.303 3.697 8 O -0.445 6.445 9 N -0.352 5.352 10 C 0.017 3.983 11 H 0.117 0.883 12 C -0.160 4.160 13 C -0.088 4.088 14 H 0.122 0.878 15 C -0.076 4.076 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.157 4.157 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.180 4.180 22 C -0.128 4.128 23 C -0.127 4.127 24 N 0.549 4.451 25 O -0.398 6.398 26 O -0.377 6.377 27 C -0.036 4.036 28 C -0.209 4.209 29 O -0.336 6.336 30 Si 0.675 3.325 31 C -0.191 4.191 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.259 0.741 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.118 0.882 46 H 0.083 0.917 47 H 0.201 0.799 48 H 0.146 0.854 49 H 0.232 0.768 50 H -0.222 1.222 51 H -0.175 1.175 52 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.909 -4.284 1.661 4.976 hybrid contribution 1.016 0.902 -1.177 1.797 sum -0.893 -3.382 0.484 3.531 Atomic orbital electron populations 1.23749 0.74959 1.06974 1.03740 1.86329 1.24560 1.24661 1.86292 1.18677 0.89218 0.86281 0.93807 1.17953 0.88717 0.85181 1.02689 1.86306 1.18516 1.26819 1.88697 1.22942 0.78763 0.96163 1.07316 1.20354 0.83222 0.90381 0.75760 1.90777 1.63959 1.39834 1.49917 1.45696 1.05075 1.10195 1.74262 1.22505 0.93113 0.85160 0.97539 0.88337 1.23410 0.93294 1.00719 0.98622 1.21311 0.90437 1.00377 0.96695 0.87834 1.19789 0.95147 0.94199 0.98507 1.21225 0.97316 0.97063 0.98549 1.21445 0.93642 0.99955 0.99624 1.21453 1.00205 0.94046 0.99956 1.21421 0.97381 0.97747 0.98384 1.21319 0.93516 0.99750 1.00328 1.23606 0.96020 1.01566 0.96768 1.20906 1.03024 0.88098 1.00814 1.20535 0.92669 0.81983 1.17519 1.43689 1.00814 1.03374 0.97193 1.94507 0.96499 1.94101 1.54667 1.94577 1.64448 1.25364 1.53315 1.20091 0.91013 0.97358 0.95164 1.25778 1.11692 0.93825 0.89603 1.86772 1.85282 1.45049 1.16493 0.94241 0.70197 0.79737 0.88311 1.21213 1.02203 0.88412 1.07258 0.85921 0.89259 0.90711 0.85247 0.85500 0.74064 0.89930 0.87809 0.84412 0.84668 0.85098 0.85096 0.85242 0.88202 0.91662 0.79870 0.85385 0.76810 1.22165 1.17497 0.79645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.12 16 2 O -0.31 -0.14 10.28 -79.58 -0.82 -0.95 16 3 C 0.17 -0.11 6.70 22.57 0.15 0.04 16 4 C 0.10 0.05 6.70 22.57 0.15 0.20 16 5 O -0.29 -0.90 9.45 -67.06 -0.63 -1.54 16 6 C 0.03 -0.12 5.22 71.24 0.37 0.25 16 7 C 0.52 0.51 7.91 87.66 0.69 1.21 16 8 O -0.57 -6.98 16.10 16.03 0.26 -6.73 16 9 N -0.70 3.85 5.35 -440.07 -2.36 1.49 16 10 C 0.12 -0.39 4.24 45.51 0.19 -0.19 16 11 H 0.10 0.16 7.47 -2.39 -0.02 0.15 16 12 C -0.12 0.75 7.30 31.12 0.23 0.98 16 13 C -0.07 0.26 3.98 -11.01 -0.04 0.21 16 14 H 0.10 -0.40 8.09 -2.39 -0.02 -0.42 16 15 C -0.08 0.08 5.29 -19.87 -0.11 -0.03 16 16 C -0.12 0.23 8.60 22.27 0.19 0.42 16 17 C -0.13 0.10 10.05 22.27 0.22 0.32 16 18 C -0.14 -0.05 10.05 22.27 0.22 0.17 16 19 C -0.13 -0.09 10.05 22.27 0.22 0.13 16 20 C -0.13 -0.05 9.71 22.27 0.22 0.16 16 21 C -0.14 0.48 7.25 31.12 0.23 0.70 16 22 C -0.11 0.11 8.54 22.35 0.19 0.31 16 23 C -0.04 -0.12 6.85 36.38 0.25 0.13 16 24 N 0.04 0.31 4.45 -46.46 -0.21 0.11 16 25 O -0.19 -1.85 18.44 18.88 0.35 -1.50 16 26 O -0.16 -1.93 14.62 25.11 0.37 -1.56 16 27 C -0.03 0.03 5.26 -19.86 -0.10 -0.08 16 28 C -0.10 0.02 1.74 71.24 0.12 0.15 16 29 O -0.53 -1.69 11.79 -129.61 -1.53 -3.22 16 30 Si 0.77 -4.36 30.24 68.60 2.07 -2.29 16 31 C -0.17 0.77 7.65 22.35 0.17 0.94 16 32 H 0.12 -1.27 8.14 -2.39 -0.02 -1.29 16 33 H 0.09 -1.15 7.65 -2.39 -0.02 -1.17 16 34 H 0.07 -0.82 7.67 -2.39 -0.02 -0.84 16 35 H 0.13 -1.41 7.66 -2.39 -0.02 -1.43 16 36 H 0.13 -1.33 7.66 -2.39 -0.02 -1.35 16 37 H 0.42 -5.34 8.73 -92.71 -0.81 -6.15 16 38 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 39 H 0.10 -0.88 7.69 -2.39 -0.02 -0.90 16 40 H 0.14 -0.87 6.67 -2.91 -0.02 -0.89 16 41 H 0.14 -0.57 8.06 -2.91 -0.02 -0.60 16 42 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 43 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 44 H 0.13 -0.29 8.05 -2.91 -0.02 -0.31 16 45 H 0.10 -0.53 6.32 -2.39 -0.02 -0.54 16 46 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 47 H 0.18 -1.05 5.85 -2.91 -0.02 -1.07 16 48 H 0.13 0.29 6.07 -2.38 -0.01 0.28 16 49 H 0.38 -1.68 8.70 -74.06 -0.64 -2.32 16 50 H -0.29 -0.83 7.11 99.48 0.71 -0.12 16 51 H -0.25 1.66 6.68 99.48 0.66 2.32 16 52 H 0.19 -1.83 3.09 -2.91 -0.01 -1.84 16 Total: 0.00 -30.50 433.40 1.75 -28.74 By element: Atomic # 1 Polarization: -19.27 SS G_CDS: -0.44 Total: -19.70 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 4.69 Total: 7.15 kcal Atomic # 7 Polarization: 4.16 SS G_CDS: -2.56 Total: 1.59 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -2.01 Total: -15.50 kcal Atomic # 14 Polarization: -4.36 SS G_CDS: 2.07 Total: -2.29 kcal Total: -30.50 1.75 -28.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_4549636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.148 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds