Wall clock time and date at job start Sun Mar 7 2021 08:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3 5 5 C 1.38239 * 119.94726 * 64.72722 * 4 2 1 6 6 C 1.38170 * 120.05299 * 179.72660 * 5 4 2 7 7 N 1.48006 * 120.02217 * 180.27346 * 6 5 4 8 8 O 1.21796 * 120.00501 * 0.26859 * 7 6 5 9 9 O 1.21807 * 119.99592 * 180.27170 * 7 6 5 10 10 C 1.38709 * 119.94701 * 0.54205 * 6 5 4 11 11 O 1.35895 * 120.05636 * 179.70967 * 10 6 5 12 12 C 1.42900 * 117.00006 * 180.02562 * 11 10 6 13 13 C 1.50699 * 109.47102 * 179.97438 * 12 11 10 14 14 O 1.21276 * 119.99976 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99560 * 179.97438 * 13 12 11 16 16 C 1.46502 * 119.99752 * 179.97438 * 15 13 12 17 17 H 1.09006 * 112.85015 * 334.67417 * 16 15 13 18 18 C 1.53781 * 113.61464 * 105.86313 * 16 15 13 19 19 C 1.53949 * 87.02091 * 139.95465 * 18 16 15 20 20 H 1.08997 * 113.61506 * 89.20104 * 19 18 16 21 21 C 1.50701 * 113.66781 * 220.07061 * 19 18 16 22 22 C 1.38236 * 119.99948 * 37.28225 * 21 19 18 23 23 C 1.38238 * 119.99957 * 179.81256 * 22 21 19 24 24 C 1.38234 * 119.99852 * 0.39569 * 23 22 21 25 25 C 1.38234 * 120.00110 * 359.86133 * 24 23 22 26 26 C 1.38231 * 119.99731 * 359.95080 * 25 24 23 27 27 C 1.53775 * 113.61872 * 203.47062 * 16 15 13 28 28 C 1.38753 * 119.88467 * 359.72911 * 10 6 5 29 29 C 1.38121 * 119.94617 * 359.97438 * 28 10 6 30 30 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 31 31 H 1.09004 * 109.46690 * 240.00803 * 2 1 3 32 32 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 33 33 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 34 34 H 1.08007 * 119.97243 * 359.97330 * 5 4 2 35 35 H 1.09000 * 109.46785 * 300.00003 * 12 11 10 36 36 H 1.09001 * 109.46932 * 59.99399 * 12 11 10 37 37 H 0.96998 * 120.00360 * 0.02562 * 15 13 12 38 38 H 1.09001 * 113.61560 * 254.53546 * 18 16 15 39 39 H 1.09003 * 113.60985 * 25.43360 * 18 16 15 40 40 H 1.08004 * 120.00107 * 0.02562 * 22 21 19 41 41 H 1.08006 * 120.00055 * 180.23835 * 23 22 21 42 42 H 1.08004 * 119.99685 * 179.83578 * 24 23 22 43 43 H 1.08005 * 119.99919 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.99786 * 179.97438 * 26 25 24 45 45 H 1.09003 * 113.61236 * 334.57510 * 27 16 15 46 46 H 1.09003 * 113.61548 * 105.38252 * 27 16 15 47 47 H 1.07996 * 120.02777 * 180.02562 * 28 10 6 48 48 H 1.08002 * 119.96979 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 1.6792 -2.0592 1.3996 6 6 2.1436 -2.7141 2.5242 7 7 1.8785 -4.1593 2.7018 8 8 1.2550 -4.7729 1.8543 9 8 2.2839 -4.7351 3.6957 10 6 2.8536 -2.0148 3.4890 11 8 3.3063 -2.6554 4.5987 12 6 4.0295 -1.8722 5.5503 13 6 4.4480 -2.7452 6.7052 14 8 4.1553 -3.9221 6.7128 15 7 5.1475 -2.2181 7.7295 16 6 5.5539 -3.0666 8.8525 17 1 4.9054 -3.9327 8.9849 18 6 7.0521 -3.4134 8.8519 19 6 7.0159 -3.2171 10.3784 20 1 6.7686 -4.1243 10.9296 21 6 8.2297 -2.5119 10.9266 22 6 8.8165 -1.4867 10.2086 23 6 9.9276 -0.8372 10.7132 24 6 10.4568 -1.2185 11.9320 25 6 9.8733 -2.2473 12.6475 26 6 8.7599 -2.8940 12.1447 27 6 5.8128 -2.2865 10.1521 28 6 3.1005 -0.6600 3.3193 29 6 2.6394 -0.0112 2.1905 30 1 -0.3934 0.4418 -0.7650 31 1 1.7923 -0.5137 -0.8901 32 1 1.5616 2.4678 1.2086 33 1 3.5346 1.7703 -0.0322 34 1 1.1222 -2.6022 0.6504 35 1 4.9144 -1.4489 5.0750 36 1 3.3931 -1.0664 5.9163 37 1 5.3812 -1.2767 7.7236 38 1 7.2629 -4.4386 8.5475 39 1 7.6695 -2.6809 8.3320 40 1 8.4048 -1.1907 9.2550 41 1 10.3838 -0.0336 10.1540 42 1 11.3265 -0.7129 12.3250 43 1 10.2870 -2.5454 13.5996 44 1 8.3042 -3.6981 12.7035 45 1 6.0907 -1.2453 9.9883 46 1 5.0238 -2.4019 10.8953 47 1 3.6534 -0.1134 4.0689 48 1 2.8310 1.0434 2.0583 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16147626_4549638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:12 Heat of formation + Delta-G solvation = -10.094377 kcal Electronic energy + Delta-G solvation = -33997.322340 eV Core-core repulsion = 29182.088995 eV Total energy + Delta-G solvation = -4815.233345 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.145 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.02652 -41.84796 -41.41740 -40.42673 -39.49911 -38.62364 -37.56462 -37.12668 -34.88432 -33.55851 -32.51484 -32.00274 -31.78667 -30.01246 -27.60741 -26.87034 -26.78057 -25.94834 -24.16687 -23.66261 -22.82260 -22.49947 -21.74072 -20.52510 -20.39449 -19.48175 -19.14354 -18.70609 -18.44978 -18.31624 -18.20477 -17.67630 -17.53118 -16.98852 -16.67760 -16.50533 -16.07681 -16.00157 -15.79916 -15.48355 -15.36560 -15.22062 -14.61621 -14.49874 -14.38774 -14.31182 -14.07858 -13.99011 -13.86142 -13.63398 -13.20952 -13.07118 -12.85147 -12.65890 -12.51654 -12.41519 -12.21177 -12.20129 -11.92407 -11.81471 -11.77643 -11.73437 -11.55744 -10.94478 -10.94069 -10.63155 -10.21592 -9.90864 -9.88157 -9.62426 -5.23639 -1.14411 -0.38958 0.36404 0.37279 0.43861 0.52178 0.98796 1.07408 1.37239 1.38431 1.64543 1.90252 2.19439 2.76485 2.88238 3.00627 3.08786 3.28049 3.36909 3.44301 3.50684 3.52529 3.54115 3.59958 3.64926 3.71990 3.79579 3.93015 4.02994 4.03857 4.06875 4.13285 4.17817 4.27195 4.39110 4.45440 4.51227 4.53250 4.60283 4.66820 4.68176 4.82264 4.89960 4.90724 4.98774 5.05939 5.10578 5.34360 5.44520 5.51233 5.57936 5.65378 5.69862 6.03639 6.23708 6.37799 6.94339 7.01119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.071 4.071 3 Si 0.691 3.309 4 C -0.112 4.112 5 C 0.013 3.987 6 C -0.074 4.074 7 N 0.029 4.971 8 O -0.175 6.175 9 O -0.117 6.117 10 C 0.200 3.800 11 O -0.252 6.252 12 C 0.029 3.971 13 C 0.515 3.485 14 O -0.494 6.494 15 N -0.718 5.718 16 C 0.125 3.875 17 H 0.120 0.880 18 C -0.145 4.145 19 C -0.071 4.071 20 H 0.104 0.896 21 C -0.070 4.070 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.135 4.135 28 C -0.208 4.208 29 C -0.031 4.031 30 H 0.388 0.612 31 H 0.082 0.918 32 H -0.248 1.248 33 H -0.251 1.251 34 H 0.166 0.834 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.401 0.599 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.156 0.844 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.057 10.845 -1.340 11.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.181 4.181 3 Si 0.591 3.409 4 C -0.113 4.113 5 C -0.006 4.006 6 C -0.159 4.159 7 N 0.549 4.451 8 O -0.384 6.384 9 O -0.341 6.341 10 C 0.151 3.849 11 O -0.161 6.161 12 C -0.049 4.049 13 C 0.298 3.702 14 O -0.366 6.366 15 N -0.371 5.371 16 C 0.021 3.979 17 H 0.138 0.862 18 C -0.184 4.184 19 C -0.089 4.089 20 H 0.122 0.878 21 C -0.070 4.070 22 C -0.136 4.136 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.135 4.135 26 C -0.133 4.133 27 C -0.173 4.173 28 C -0.227 4.227 29 C -0.049 4.049 30 H 0.236 0.764 31 H 0.100 0.900 32 H -0.172 1.172 33 H -0.176 1.176 34 H 0.184 0.816 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.236 0.764 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.174 0.826 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.473 10.712 -0.438 11.270 hybrid contribution 0.277 -0.094 0.252 0.386 sum 3.750 10.619 -0.185 11.263 Atomic orbital electron populations 1.86498 1.16677 1.81989 1.50021 1.24645 0.86286 1.10675 0.96513 0.94652 0.80816 0.77605 0.87840 1.19233 1.01902 0.92802 0.97339 1.20817 0.92130 0.93787 0.93881 1.20570 1.12609 0.82624 1.00065 1.43303 0.99003 1.02342 1.00404 1.94549 1.39502 1.66161 1.38200 1.94700 1.51957 1.69056 1.18393 1.18649 0.89948 0.90716 0.85625 1.86504 1.66825 1.35512 1.27280 1.22760 0.97944 0.94471 0.89760 1.19828 0.78752 0.88531 0.83060 1.90863 1.52548 1.15687 1.77518 1.45793 1.57056 1.13382 1.20892 1.22610 0.95782 0.95010 0.84538 0.86186 1.23657 0.96299 1.03335 0.95082 1.21353 0.92667 0.98747 0.96175 0.87779 1.19623 0.96258 0.96326 0.94789 1.20970 0.96507 0.96407 0.99741 1.21164 0.96435 0.99836 0.96191 1.21207 1.00126 0.97578 0.95267 1.21204 0.96094 0.96221 0.99973 1.21098 0.96490 1.00074 0.95648 1.23449 0.97891 0.99248 0.96671 1.21205 1.07742 0.92187 1.01556 1.21142 0.92550 0.99683 0.91475 0.76398 0.89970 1.17214 1.17561 0.81647 0.88098 0.88067 0.76399 0.90286 0.89221 0.86261 0.86071 0.86052 0.85938 0.85966 0.89224 0.90063 0.82635 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.89 12.81 -35.23 -0.45 0.44 16 2 C -0.07 0.16 2.79 36.00 0.10 0.26 16 3 Si 0.69 -2.57 29.85 -169.99 -5.07 -7.64 16 4 C -0.11 -0.01 5.39 -104.61 -0.56 -0.58 16 5 C 0.01 0.02 9.18 -39.61 -0.36 -0.34 16 6 C -0.07 -0.29 6.87 -79.80 -0.55 -0.84 16 7 N 0.03 0.21 4.45 34.03 0.15 0.36 16 8 O -0.18 -1.34 18.45 -29.46 -0.54 -1.89 16 9 O -0.12 -1.08 17.24 -36.49 -0.63 -1.70 16 10 C 0.20 0.41 6.67 -39.22 -0.26 0.15 16 11 O -0.25 -0.78 7.68 -49.76 -0.38 -1.16 16 12 C 0.03 -0.05 5.22 36.01 0.19 0.14 16 13 C 0.51 0.51 7.91 -10.99 -0.09 0.43 16 14 O -0.49 -3.22 16.12 -14.35 -0.23 -3.45 16 15 N -0.72 1.64 5.36 -53.02 -0.28 1.35 16 16 C 0.12 -0.17 4.21 -67.12 -0.28 -0.45 16 17 H 0.12 0.07 7.50 -51.93 -0.39 -0.32 16 18 C -0.15 0.20 7.27 -25.83 -0.19 0.01 16 19 C -0.07 0.11 3.98 -90.87 -0.36 -0.25 16 20 H 0.10 -0.20 8.09 -51.93 -0.42 -0.62 16 21 C -0.07 0.02 5.29 -104.62 -0.55 -0.53 16 22 C -0.12 0.07 8.63 -39.58 -0.34 -0.27 16 23 C -0.12 0.03 10.05 -39.58 -0.40 -0.37 16 24 C -0.12 -0.01 10.05 -39.58 -0.40 -0.41 16 25 C -0.12 -0.02 10.05 -39.59 -0.40 -0.42 16 26 C -0.12 -0.01 9.71 -39.59 -0.38 -0.40 16 27 C -0.13 0.35 7.30 -25.92 -0.19 0.16 16 28 C -0.21 0.27 9.04 -39.43 -0.36 -0.09 16 29 C -0.03 0.03 8.66 -39.61 -0.34 -0.31 16 30 H 0.39 -2.55 8.74 45.56 0.40 -2.15 16 31 H 0.08 -0.32 7.96 -51.93 -0.41 -0.74 16 32 H -0.25 0.26 7.05 56.52 0.40 0.66 16 33 H -0.25 0.41 7.11 56.52 0.40 0.82 16 34 H 0.17 0.19 7.61 -52.48 -0.40 -0.21 16 35 H 0.10 -0.50 7.66 -51.93 -0.40 -0.90 16 36 H 0.10 -0.48 7.66 -51.93 -0.40 -0.88 16 37 H 0.40 -2.27 8.71 -40.82 -0.36 -2.63 16 38 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 39 H 0.09 -0.17 6.31 -51.93 -0.33 -0.50 16 40 H 0.12 -0.29 6.65 -52.48 -0.35 -0.64 16 41 H 0.12 -0.23 8.06 -52.48 -0.42 -0.65 16 42 H 0.12 -0.17 8.06 -52.48 -0.42 -0.60 16 43 H 0.12 -0.16 8.06 -52.48 -0.42 -0.59 16 44 H 0.12 -0.15 8.06 -52.48 -0.42 -0.57 16 45 H 0.09 -0.31 7.70 -51.93 -0.40 -0.71 16 46 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 47 H 0.16 -0.78 6.30 -52.49 -0.33 -1.11 16 48 H 0.14 -0.36 4.86 -52.49 -0.26 -0.61 16 LS Contribution 408.64 15.07 6.16 6.16 Total: 0.00 -12.86 408.64 -12.79 -25.65 By element: Atomic # 1 Polarization: -8.23 SS G_CDS: -5.78 Total: -14.00 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -5.73 Total: -4.10 kcal Atomic # 7 Polarization: 1.85 SS G_CDS: -0.13 Total: 1.71 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -2.24 Total: -7.78 kcal Atomic # 14 Polarization: -2.57 SS G_CDS: -5.07 Total: -7.64 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -12.86 -12.79 -25.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_4549638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.553 kcal (2) G-P(sol) polarization free energy of solvation -12.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds