Wall clock time and date at job start Sun Mar 7 2021 08:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3 5 5 C 1.38239 * 119.94726 * 64.72722 * 4 2 1 6 6 C 1.38170 * 120.05299 * 179.72660 * 5 4 2 7 7 N 1.48006 * 120.02217 * 180.27346 * 6 5 4 8 8 O 1.21796 * 120.00501 * 0.26859 * 7 6 5 9 9 O 1.21807 * 119.99592 * 180.27170 * 7 6 5 10 10 C 1.38709 * 119.94701 * 0.54205 * 6 5 4 11 11 O 1.35895 * 120.05636 * 179.70967 * 10 6 5 12 12 C 1.42900 * 117.00006 * 180.02562 * 11 10 6 13 13 C 1.50699 * 109.47102 * 179.97438 * 12 11 10 14 14 O 1.21276 * 119.99976 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99560 * 179.97438 * 13 12 11 16 16 C 1.46502 * 119.99752 * 179.97438 * 15 13 12 17 17 H 1.09006 * 112.85015 * 334.67417 * 16 15 13 18 18 C 1.53781 * 113.61464 * 105.86313 * 16 15 13 19 19 C 1.53949 * 87.02091 * 139.95465 * 18 16 15 20 20 H 1.08997 * 113.61506 * 89.20104 * 19 18 16 21 21 C 1.50701 * 113.66781 * 220.07061 * 19 18 16 22 22 C 1.38236 * 119.99948 * 37.28225 * 21 19 18 23 23 C 1.38238 * 119.99957 * 179.81256 * 22 21 19 24 24 C 1.38234 * 119.99852 * 0.39569 * 23 22 21 25 25 C 1.38234 * 120.00110 * 359.86133 * 24 23 22 26 26 C 1.38231 * 119.99731 * 359.95080 * 25 24 23 27 27 C 1.53775 * 113.61872 * 203.47062 * 16 15 13 28 28 C 1.38753 * 119.88467 * 359.72911 * 10 6 5 29 29 C 1.38121 * 119.94617 * 359.97438 * 28 10 6 30 30 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 31 31 H 1.09004 * 109.46690 * 240.00803 * 2 1 3 32 32 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 33 33 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 34 34 H 1.08007 * 119.97243 * 359.97330 * 5 4 2 35 35 H 1.09000 * 109.46785 * 300.00003 * 12 11 10 36 36 H 1.09001 * 109.46932 * 59.99399 * 12 11 10 37 37 H 0.96998 * 120.00360 * 0.02562 * 15 13 12 38 38 H 1.09001 * 113.61560 * 254.53546 * 18 16 15 39 39 H 1.09003 * 113.60985 * 25.43360 * 18 16 15 40 40 H 1.08004 * 120.00107 * 0.02562 * 22 21 19 41 41 H 1.08006 * 120.00055 * 180.23835 * 23 22 21 42 42 H 1.08004 * 119.99685 * 179.83578 * 24 23 22 43 43 H 1.08005 * 119.99919 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.99786 * 179.97438 * 26 25 24 45 45 H 1.09003 * 113.61236 * 334.57510 * 27 16 15 46 46 H 1.09003 * 113.61548 * 105.38252 * 27 16 15 47 47 H 1.07996 * 120.02777 * 180.02562 * 28 10 6 48 48 H 1.08002 * 119.96979 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 1.6792 -2.0592 1.3996 6 6 2.1436 -2.7141 2.5242 7 7 1.8785 -4.1593 2.7018 8 8 1.2550 -4.7729 1.8543 9 8 2.2839 -4.7351 3.6957 10 6 2.8536 -2.0148 3.4890 11 8 3.3063 -2.6554 4.5987 12 6 4.0295 -1.8722 5.5503 13 6 4.4480 -2.7452 6.7052 14 8 4.1553 -3.9221 6.7128 15 7 5.1475 -2.2181 7.7295 16 6 5.5539 -3.0666 8.8525 17 1 4.9054 -3.9327 8.9849 18 6 7.0521 -3.4134 8.8519 19 6 7.0159 -3.2171 10.3784 20 1 6.7686 -4.1243 10.9296 21 6 8.2297 -2.5119 10.9266 22 6 8.8165 -1.4867 10.2086 23 6 9.9276 -0.8372 10.7132 24 6 10.4568 -1.2185 11.9320 25 6 9.8733 -2.2473 12.6475 26 6 8.7599 -2.8940 12.1447 27 6 5.8128 -2.2865 10.1521 28 6 3.1005 -0.6600 3.3193 29 6 2.6394 -0.0112 2.1905 30 1 -0.3934 0.4418 -0.7650 31 1 1.7923 -0.5137 -0.8901 32 1 1.5616 2.4678 1.2086 33 1 3.5346 1.7703 -0.0322 34 1 1.1222 -2.6022 0.6504 35 1 4.9144 -1.4489 5.0750 36 1 3.3931 -1.0664 5.9163 37 1 5.3812 -1.2767 7.7236 38 1 7.2629 -4.4386 8.5475 39 1 7.6695 -2.6809 8.3320 40 1 8.4048 -1.1907 9.2550 41 1 10.3838 -0.0336 10.1540 42 1 11.3265 -0.7129 12.3250 43 1 10.2870 -2.5454 13.5996 44 1 8.3042 -3.6981 12.7035 45 1 6.0907 -1.2453 9.9883 46 1 5.0238 -2.4019 10.8953 47 1 3.6534 -0.1134 4.0689 48 1 2.8310 1.0434 2.0583 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_4549638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:10 Heat of formation + Delta-G solvation = -10.421880 kcal Electronic energy + Delta-G solvation = -33997.336541 eV Core-core repulsion = 29182.088995 eV Total energy + Delta-G solvation = -4815.247547 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.145 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.38279 -41.92627 -41.40050 -40.42773 -39.47314 -38.60742 -37.65287 -37.39365 -34.90346 -33.63857 -32.47119 -31.93144 -31.71213 -29.91745 -27.91322 -26.74502 -26.68972 -25.85474 -24.23293 -23.58985 -22.91780 -22.45130 -21.73489 -20.54682 -20.40238 -19.86703 -19.26057 -18.74748 -18.54685 -18.33677 -18.15668 -17.67165 -17.51526 -16.91746 -16.58988 -16.42347 -15.99665 -15.95220 -15.83794 -15.37521 -15.34239 -15.15816 -14.54067 -14.38952 -14.26345 -14.21415 -13.99907 -13.93328 -13.83551 -13.47473 -13.16196 -13.05416 -12.76875 -12.72921 -12.57073 -12.43927 -12.33414 -12.31729 -12.19465 -11.98935 -11.84102 -11.68305 -11.48970 -11.01875 -10.98861 -10.40431 -10.18254 -9.88701 -9.82080 -9.55925 -4.89758 -1.41629 -0.37233 0.04256 0.24572 0.42495 0.49839 1.12209 1.27125 1.37720 1.68300 1.88902 1.91186 2.26189 2.83101 2.96728 3.07288 3.24314 3.40913 3.47084 3.50230 3.54020 3.64640 3.70892 3.80313 3.89082 3.91885 3.93062 4.03859 4.11830 4.13697 4.17515 4.22812 4.28832 4.38956 4.48659 4.53659 4.61486 4.66769 4.68770 4.71322 4.81560 4.93671 4.94771 4.99723 5.07864 5.10081 5.15327 5.19031 5.46838 5.58321 5.63217 5.64424 5.73021 6.12118 6.36949 6.39669 6.85876 7.09430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.088 4.088 3 Si 0.779 3.221 4 C -0.117 4.117 5 C 0.002 3.998 6 C -0.101 4.101 7 N 0.034 4.966 8 O -0.189 6.189 9 O -0.173 6.173 10 C 0.194 3.806 11 O -0.287 6.287 12 C 0.022 3.978 13 C 0.510 3.490 14 O -0.564 6.564 15 N -0.697 5.697 16 C 0.121 3.879 17 H 0.093 0.907 18 C -0.142 4.142 19 C -0.070 4.070 20 H 0.101 0.899 21 C -0.076 4.076 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.138 4.138 25 C -0.131 4.131 26 C -0.132 4.132 27 C -0.119 4.119 28 C -0.190 4.190 29 C -0.027 4.027 30 H 0.407 0.593 31 H 0.098 0.902 32 H -0.279 1.279 33 H -0.273 1.273 34 H 0.162 0.838 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.422 0.578 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.203 0.797 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 14.972 -2.008 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.378 6.378 2 C -0.196 4.196 3 Si 0.681 3.319 4 C -0.119 4.119 5 C -0.017 4.017 6 C -0.186 4.186 7 N 0.546 4.454 8 O -0.400 6.400 9 O -0.386 6.386 10 C 0.144 3.856 11 O -0.197 6.197 12 C -0.055 4.055 13 C 0.295 3.705 14 O -0.441 6.441 15 N -0.351 5.351 16 C 0.016 3.984 17 H 0.112 0.888 18 C -0.180 4.180 19 C -0.089 4.089 20 H 0.119 0.881 21 C -0.076 4.076 22 C -0.141 4.141 23 C -0.146 4.146 24 C -0.156 4.156 25 C -0.149 4.149 26 C -0.150 4.150 27 C -0.157 4.157 28 C -0.208 4.208 29 C -0.044 4.044 30 H 0.259 0.741 31 H 0.115 0.885 32 H -0.206 1.206 33 H -0.199 1.199 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.261 0.739 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.125 0.875 46 H 0.100 0.900 47 H 0.219 0.781 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.326 14.841 -1.055 15.494 hybrid contribution 0.034 -1.255 0.429 1.327 sum 4.360 13.586 -0.626 14.282 Atomic orbital electron populations 1.86449 1.17076 1.82696 1.51592 1.25016 0.86234 1.12363 0.95988 0.93439 0.78058 0.74374 0.86010 1.19678 1.01549 0.92046 0.98596 1.20909 0.92667 0.94739 0.93377 1.20870 1.15288 0.80197 1.02268 1.43790 0.98061 1.03955 0.99610 1.94493 1.39705 1.67642 1.38120 1.94689 1.53906 1.70625 1.19419 1.18862 0.89832 0.91779 0.85100 1.86476 1.67431 1.37695 1.28125 1.23150 1.00025 0.93955 0.88346 1.20453 0.77998 0.88013 0.84007 1.90845 1.55454 1.18736 1.79064 1.45633 1.55570 1.14250 1.19618 1.22486 0.95326 0.94938 0.85674 0.88846 1.23638 0.96268 1.02676 0.95435 1.21328 0.92833 0.98954 0.95762 0.88112 1.19776 0.96558 0.96560 0.94748 1.21225 0.96386 0.96063 1.00418 1.21449 0.96613 1.00292 0.96222 1.21458 1.00679 0.97776 0.95709 1.21419 0.96361 0.96557 1.00592 1.21315 0.96859 1.00564 0.96258 1.23383 0.97174 0.99675 0.95453 1.21680 1.06518 0.90445 1.02158 1.21521 0.91263 1.00655 0.90969 0.74085 0.88468 1.20574 1.19938 0.82030 0.83995 0.84152 0.73904 0.92061 0.87997 0.84291 0.84497 0.85030 0.85129 0.85408 0.87464 0.89955 0.78060 0.82027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.39 12.81 -148.98 -1.91 0.49 16 2 C -0.09 0.53 2.79 71.23 0.20 0.73 16 3 Si 0.78 -7.64 29.85 68.60 2.05 -5.59 16 4 C -0.12 0.09 5.39 -19.85 -0.11 -0.02 16 5 C 0.00 0.01 9.18 22.25 0.20 0.21 16 6 C -0.10 -0.97 6.87 36.47 0.25 -0.72 16 7 N 0.03 0.61 4.45 -46.24 -0.21 0.40 16 8 O -0.19 -3.57 18.45 18.89 0.35 -3.22 16 9 O -0.17 -3.94 17.24 25.60 0.44 -3.50 16 10 C 0.19 0.78 6.67 22.51 0.15 0.93 16 11 O -0.29 -1.96 7.68 -63.34 -0.49 -2.45 16 12 C 0.02 -0.11 5.22 71.24 0.37 0.26 16 13 C 0.51 1.17 7.91 87.66 0.69 1.86 16 14 O -0.56 -8.98 16.12 16.02 0.26 -8.72 16 15 N -0.70 3.78 5.36 -440.04 -2.36 1.42 16 16 C 0.12 -0.26 4.21 45.52 0.19 -0.07 16 17 H 0.09 0.35 7.50 -2.38 -0.02 0.33 16 18 C -0.14 0.33 7.27 31.18 0.23 0.56 16 19 C -0.07 0.21 3.98 -10.96 -0.04 0.17 16 20 H 0.10 -0.26 8.09 -2.39 -0.02 -0.28 16 21 C -0.08 0.06 5.29 -19.87 -0.11 -0.04 16 22 C -0.12 0.29 8.63 22.27 0.19 0.48 16 23 C -0.13 0.18 10.05 22.27 0.22 0.41 16 24 C -0.14 0.00 10.05 22.27 0.22 0.23 16 25 C -0.13 -0.09 10.05 22.27 0.22 0.13 16 26 C -0.13 -0.09 9.71 22.27 0.22 0.12 16 27 C -0.12 0.71 7.30 31.12 0.23 0.93 16 28 C -0.19 1.01 9.04 22.37 0.20 1.21 16 29 C -0.03 0.12 8.66 22.25 0.19 0.31 16 30 H 0.41 -5.88 8.74 -74.05 -0.65 -6.53 16 31 H 0.10 -0.90 7.96 -2.38 -0.02 -0.92 16 32 H -0.28 1.25 7.05 99.48 0.70 1.95 16 33 H -0.27 1.63 7.11 99.48 0.71 2.34 16 34 H 0.16 0.70 7.61 -2.91 -0.02 0.67 16 35 H 0.14 -1.94 7.66 -2.39 -0.02 -1.96 16 36 H 0.14 -1.86 7.66 -2.39 -0.02 -1.88 16 37 H 0.42 -5.94 8.71 -92.71 -0.81 -6.74 16 38 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.10 -0.51 6.31 -2.39 -0.02 -0.52 16 40 H 0.14 -0.99 6.65 -2.91 -0.02 -1.01 16 41 H 0.14 -0.73 8.06 -2.91 -0.02 -0.75 16 42 H 0.13 -0.40 8.06 -2.91 -0.02 -0.43 16 43 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 44 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 45 H 0.11 -0.99 7.70 -2.39 -0.02 -1.01 16 46 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 47 H 0.20 -3.10 6.30 -2.91 -0.02 -3.11 16 48 H 0.16 -1.41 4.86 -2.91 -0.01 -1.43 16 Total: 0.00 -37.17 408.64 1.49 -35.68 By element: Atomic # 1 Polarization: -21.82 SS G_CDS: -0.38 Total: -22.20 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 3.73 Total: 7.70 kcal Atomic # 7 Polarization: 4.39 SS G_CDS: -2.57 Total: 1.82 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -1.35 Total: -17.41 kcal Atomic # 14 Polarization: -7.64 SS G_CDS: 2.05 Total: -5.59 kcal Total: -37.17 1.49 -35.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_4549638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.258 kcal (2) G-P(sol) polarization free energy of solvation -37.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds