Wall clock time and date at job start Sun Mar 7 2021 08:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35982 * 116.99952 * 2 1 4 4 C 1.38679 * 119.99717 * 180.02562 * 3 2 1 5 5 C 1.38154 * 119.99820 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.99885 * 180.02562 * 5 4 3 7 7 O 1.42903 * 109.47058 * 254.97443 * 6 5 4 8 8 Si 1.86295 * 109.47249 * 14.97736 * 6 5 4 9 9 C 1.38678 * 119.99741 * 0.02562 * 5 4 3 10 10 O 1.35985 * 119.99607 * 180.02562 * 9 5 4 11 11 C 1.42901 * 117.00124 * 179.97438 * 10 9 5 12 12 C 1.50696 * 109.47492 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99956 * 0.02562 * 12 11 10 14 14 N 1.34768 * 120.00132 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00289 * 179.97438 * 14 12 11 16 16 H 1.08999 * 112.84772 * 336.20276 * 15 14 12 17 17 C 1.53781 * 113.69176 * 107.46650 * 15 14 12 18 18 C 1.54049 * 87.08031 * 139.99046 * 17 15 14 19 19 H 1.09000 * 113.61076 * 89.06984 * 18 17 15 20 20 C 1.50690 * 113.70074 * 220.05368 * 18 17 15 21 21 C 1.38242 * 119.99897 * 37.14728 * 20 18 17 22 22 C 1.38233 * 120.00067 * 179.74459 * 21 20 18 23 23 C 1.38243 * 119.99724 * 0.53275 * 22 21 20 24 24 C 1.38231 * 120.00207 * 359.74450 * 23 22 21 25 25 C 1.38234 * 119.99987 * 359.97438 * 24 23 22 26 26 C 1.53781 * 113.61760 * 205.00346 * 15 14 12 27 27 C 1.38714 * 120.00302 * 0.27026 * 9 5 4 28 28 C 1.38104 * 119.99785 * 359.45641 * 27 9 5 29 29 H 1.08997 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46997 * 299.99746 * 1 2 3 31 31 H 1.09001 * 109.47424 * 59.99524 * 1 2 3 32 32 H 1.07999 * 119.99981 * 0.04500 * 4 3 2 33 33 H 1.09001 * 109.46875 * 134.98008 * 6 5 4 34 34 H 0.96691 * 114.00383 * 300.00267 * 7 6 5 35 35 H 1.48503 * 109.99731 * 59.99812 * 8 6 5 36 36 H 1.48498 * 109.99986 * 181.31692 * 8 6 5 37 37 H 1.09000 * 109.47128 * 59.99228 * 11 10 9 38 38 H 1.09002 * 109.46710 * 300.00041 * 11 10 9 39 39 H 0.97000 * 120.00330 * 0.02562 * 14 12 11 40 40 H 1.09005 * 113.61471 * 254.54629 * 17 15 14 41 41 H 1.09003 * 113.61469 * 25.44407 * 17 15 14 42 42 H 1.07998 * 120.00098 * 0.02562 * 21 20 18 43 43 H 1.07996 * 120.00406 * 180.29628 * 22 21 20 44 44 H 1.07997 * 119.99511 * 179.76598 * 23 22 21 45 45 H 1.07995 * 119.99842 * 180.02562 * 24 23 22 46 46 H 1.08000 * 120.00167 * 180.02562 * 25 24 23 47 47 H 1.09002 * 113.61445 * 334.48426 * 26 15 14 48 48 H 1.09002 * 113.61408 * 105.30156 * 26 15 14 49 49 H 1.07998 * 120.00276 * 179.70744 * 27 9 5 50 50 H 1.08006 * 120.00204 * 180.25551 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4312 1.2841 -0.0005 5 6 4.0585 2.5151 0.0000 6 6 5.5634 2.5939 -0.0012 7 8 6.0219 2.9665 1.3000 8 14 6.2719 0.9324 -0.4571 9 6 3.3031 3.6781 0.0016 10 8 3.9205 4.8897 0.0016 11 6 3.0806 6.0459 0.0027 12 6 3.9348 7.2874 0.0032 13 8 5.1439 7.1916 0.0021 14 7 3.3552 8.5041 0.0038 15 6 4.1856 9.7110 0.0048 16 1 5.1825 9.5385 0.4103 17 6 4.1880 10.4605 -1.3381 18 6 4.1390 11.7650 -0.5202 19 1 5.1233 12.1530 -0.2578 20 6 3.2323 12.8150 -1.1084 21 6 2.0443 12.4439 -1.7103 22 6 1.2100 13.4076 -2.2452 23 6 1.5688 14.7414 -2.1881 24 6 2.7594 15.1120 -1.5915 25 6 3.5910 14.1489 -1.0513 26 6 3.4825 10.9420 0.6008 27 6 1.9179 3.6055 0.0083 28 6 1.2909 2.3750 0.0021 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 4.0194 0.3783 -0.0017 33 1 5.8876 3.3390 -0.7277 34 1 5.6915 3.8232 1.6031 35 1 5.8025 0.5336 -1.8084 36 1 7.7556 0.9884 -0.4308 37 1 2.4520 6.0374 0.8932 38 1 2.4507 6.0381 -0.8868 39 1 2.3883 8.5807 0.0042 40 1 5.1099 10.3355 -1.9062 41 1 3.2939 10.2867 -1.9368 42 1 1.7660 11.4016 -1.7585 43 1 0.2797 13.1181 -2.7112 44 1 0.9187 15.4939 -2.6095 45 1 3.0394 16.1540 -1.5465 46 1 4.5209 14.4384 -0.5848 47 1 2.3955 10.8998 0.5323 48 1 3.8338 11.2049 1.5986 49 1 1.3297 4.5113 0.0144 50 1 0.2123 2.3185 0.0032 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_4974302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:24 Heat of formation + Delta-G solvation = -54.075787 kcal Electronic energy + Delta-G solvation = -32198.399265 eV Core-core repulsion = 27738.055367 eV Total energy + Delta-G solvation = -4460.343898 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.87548 -41.42918 -40.52154 -39.80360 -38.72489 -38.05923 -36.93063 -34.87315 -32.82422 -31.96445 -31.73333 -30.96490 -29.43429 -27.96644 -26.72964 -26.59918 -25.90650 -23.85445 -23.55677 -22.46948 -22.39328 -21.68200 -20.38325 -19.55053 -18.82994 -18.47527 -18.11260 -18.02251 -17.51630 -17.39913 -16.94769 -16.60617 -16.45047 -16.12342 -15.93909 -15.65878 -15.59519 -15.46696 -15.24762 -15.19155 -14.51146 -14.33684 -14.22975 -14.16834 -14.07809 -13.95403 -13.54122 -13.48511 -13.46157 -13.14470 -13.04516 -12.57925 -12.50838 -12.32884 -12.30302 -12.03486 -11.83667 -11.68052 -11.49054 -11.44869 -11.30785 -11.22884 -10.95425 -10.16759 -10.10055 -9.82123 -9.55767 -8.82518 -4.94252 0.06164 0.33033 0.42417 0.49808 1.32890 1.40425 1.45491 1.57504 1.90800 2.34977 2.54164 2.58308 2.83012 3.41379 3.47336 3.54206 3.64980 3.70724 3.73673 3.85145 3.90102 3.94290 4.03562 4.07365 4.08944 4.12870 4.13646 4.17517 4.20784 4.27507 4.28915 4.44983 4.45618 4.53533 4.61421 4.66636 4.70398 4.71705 4.79951 4.81422 4.93751 4.97150 4.99426 5.08354 5.12037 5.15653 5.19306 5.20485 5.41000 5.48706 5.58374 5.64332 5.72736 6.12106 6.12721 6.40803 6.46232 6.51371 7.10099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.091 3.909 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.081 4.081 7 O -0.545 6.545 8 Si 0.811 3.189 9 C 0.089 3.911 10 O -0.317 6.317 11 C 0.037 3.963 12 C 0.513 3.487 13 O -0.572 6.572 14 N -0.699 5.699 15 C 0.121 3.879 16 H 0.096 0.904 17 C -0.142 4.142 18 C -0.070 4.070 19 H 0.102 0.898 20 C -0.077 4.077 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.138 4.138 24 C -0.131 4.131 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.159 4.159 28 C -0.161 4.161 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.152 0.848 33 H 0.061 0.939 34 H 0.372 0.628 35 H -0.264 1.264 36 H -0.294 1.294 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.421 0.579 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.105 0.895 48 H 0.082 0.918 49 H 0.168 0.832 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.931 2.264 0.599 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.045 3.955 4 C -0.137 4.137 5 C -0.120 4.120 6 C -0.189 4.189 7 O -0.351 6.351 8 Si 0.712 3.288 9 C 0.044 3.956 10 O -0.230 6.230 11 C -0.041 4.041 12 C 0.300 3.700 13 O -0.450 6.450 14 N -0.352 5.352 15 C 0.016 3.984 16 H 0.114 0.886 17 C -0.180 4.180 18 C -0.089 4.089 19 H 0.120 0.880 20 C -0.077 4.077 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.156 4.156 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.158 4.158 27 C -0.178 4.178 28 C -0.180 4.180 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.169 0.831 33 H 0.079 0.921 34 H 0.220 0.780 35 H -0.190 1.190 36 H -0.222 1.222 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.259 0.741 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.123 0.877 48 H 0.100 0.900 49 H 0.185 0.815 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.011 1.040 0.010 9.071 hybrid contribution -0.703 2.222 -0.477 2.379 sum -9.714 3.263 -0.468 10.258 Atomic orbital electron populations 1.23357 0.76375 1.05625 1.02365 1.86088 1.23398 1.26311 1.88929 1.18979 0.91927 0.85372 0.99184 1.20183 0.92448 0.96774 1.04264 1.19451 0.95986 0.91023 1.05529 1.25512 0.92875 1.12479 0.88005 1.86658 1.74178 1.42260 1.32010 0.92228 0.76222 0.79046 0.81281 1.18802 0.91751 0.84242 1.00770 1.86088 1.35562 1.11940 1.89446 1.22734 0.92646 0.81872 1.06828 1.20576 0.88348 0.85589 0.75527 1.90771 1.16766 1.87382 1.50073 1.45669 1.11236 1.03928 1.74363 1.22469 0.95940 0.82509 0.97459 0.88641 1.23656 1.03274 0.94281 0.96829 1.21345 0.98608 0.92151 0.96757 0.88008 1.19779 0.95489 0.93924 0.98471 1.21223 0.94095 1.00337 0.98483 1.21448 1.00331 0.93167 0.99656 1.21458 0.97264 0.97023 0.99878 1.21419 0.94937 1.00228 0.98326 1.21318 1.00373 0.92898 1.00370 1.23391 1.01441 0.92383 0.98611 1.21368 0.92026 1.00035 1.04322 1.21422 1.01603 0.90918 1.04041 0.86738 0.91391 0.91553 0.83080 0.92115 0.77993 1.18974 1.22209 0.85556 0.85978 0.74063 0.91987 0.88150 0.84380 0.84546 0.85034 0.85101 0.85339 0.87650 0.89953 0.81499 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.68 10.50 -93.34 -0.98 -1.66 16 3 C 0.09 0.23 6.69 22.49 0.15 0.38 16 4 C -0.12 -0.53 8.59 22.36 0.19 -0.33 16 5 C -0.12 -0.72 5.28 -19.78 -0.10 -0.83 16 6 C -0.08 -0.68 2.33 71.24 0.17 -0.52 16 7 O -0.54 -5.51 12.65 -148.98 -1.89 -7.39 16 8 Si 0.81 4.51 30.17 68.60 2.07 6.58 16 9 C 0.09 0.30 6.62 22.49 0.15 0.45 16 10 O -0.32 -1.40 8.56 -74.35 -0.64 -2.04 16 11 C 0.04 -0.17 5.22 71.23 0.37 0.20 16 12 C 0.51 0.73 7.91 87.66 0.69 1.42 16 13 O -0.57 -7.56 16.10 15.99 0.26 -7.31 16 14 N -0.70 3.83 5.36 -440.05 -2.36 1.47 16 15 C 0.12 -0.33 4.24 45.52 0.19 -0.14 16 16 H 0.10 0.26 7.46 -2.39 -0.02 0.24 16 17 C -0.14 0.40 7.27 31.21 0.23 0.63 16 18 C -0.07 0.24 3.99 -10.92 -0.04 0.19 16 19 H 0.10 -0.32 8.10 -2.39 -0.02 -0.34 16 20 C -0.08 0.08 5.29 -19.87 -0.11 -0.03 16 21 C -0.12 0.28 8.63 22.27 0.19 0.47 16 22 C -0.13 0.17 10.05 22.27 0.22 0.39 16 23 C -0.14 0.01 10.05 22.27 0.22 0.23 16 24 C -0.13 -0.07 10.05 22.27 0.22 0.15 16 25 C -0.13 -0.06 9.71 22.27 0.22 0.16 16 26 C -0.12 0.74 7.29 31.12 0.23 0.96 16 27 C -0.16 0.42 9.03 22.35 0.20 0.62 16 28 C -0.16 0.34 9.03 22.35 0.20 0.54 16 29 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.07 -0.57 7.66 -2.39 -0.02 -0.58 16 31 H 0.07 -0.54 7.66 -2.39 -0.02 -0.56 16 32 H 0.15 0.26 5.13 -2.91 -0.01 0.24 16 33 H 0.06 0.67 7.82 -2.39 -0.02 0.65 16 34 H 0.37 2.82 8.60 -74.06 -0.64 2.19 16 35 H -0.26 -1.97 7.11 99.48 0.71 -1.26 16 36 H -0.29 -3.51 7.11 99.48 0.71 -2.80 16 37 H 0.13 -1.41 7.65 -2.39 -0.02 -1.42 16 38 H 0.12 -1.29 7.67 -2.39 -0.02 -1.30 16 39 H 0.42 -5.56 8.73 -92.71 -0.81 -6.37 16 40 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 41 H 0.10 -0.50 6.31 -2.39 -0.02 -0.52 16 42 H 0.14 -0.94 6.65 -2.91 -0.02 -0.96 16 43 H 0.14 -0.69 8.06 -2.91 -0.02 -0.72 16 44 H 0.13 -0.40 8.06 -2.91 -0.02 -0.43 16 45 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 46 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 47 H 0.11 -0.94 7.71 -2.39 -0.02 -0.96 16 48 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 49 H 0.17 -1.73 6.29 -2.91 -0.02 -1.75 16 50 H 0.16 -1.28 6.29 -2.91 -0.02 -1.29 16 Total: 0.00 -25.20 410.99 0.76 -24.44 By element: Atomic # 1 Polarization: -19.63 SS G_CDS: -0.42 Total: -20.05 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 4.71 Total: 5.95 kcal Atomic # 7 Polarization: 3.83 SS G_CDS: -2.36 Total: 1.47 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -3.24 Total: -18.40 kcal Atomic # 14 Polarization: 4.51 SS G_CDS: 2.07 Total: 6.58 kcal Total: -25.20 0.76 -24.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_4974302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.633 kcal (2) G-P(sol) polarization free energy of solvation -25.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds