Wall clock time and date at job start Sun Mar 7 2021 08:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35988 * 117.00050 * 2 1 4 4 C 1.39159 * 120.07398 * 180.02562 * 3 2 1 5 5 O 1.35990 * 120.07156 * 359.95861 * 4 3 2 6 6 C 1.42895 * 117.00021 * 179.97438 * 5 4 3 7 7 C 1.50707 * 109.47246 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99735 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99924 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99679 * 179.97438 * 9 7 6 11 11 H 1.08995 * 112.85345 * 334.67307 * 10 9 7 12 12 C 1.53789 * 113.60826 * 105.86448 * 10 9 7 13 13 C 1.53953 * 87.01540 * 139.95261 * 12 10 9 14 14 H 1.09002 * 113.61752 * 89.19894 * 13 12 10 15 15 C 1.50705 * 113.66392 * 220.06766 * 13 12 10 16 16 C 1.38226 * 120.00243 * 37.28702 * 15 13 12 17 17 C 1.38238 * 120.00319 * 179.74501 * 16 15 13 18 18 C 1.38236 * 119.99366 * 0.52682 * 17 16 15 19 19 C 1.38232 * 120.00489 * 359.74901 * 18 17 16 20 20 C 1.38236 * 119.99595 * 217.55888 * 15 13 12 21 21 C 1.53782 * 113.61165 * 203.46835 * 10 9 7 22 22 C 1.38562 * 119.85457 * 179.97438 * 4 3 2 23 23 C 1.38246 * 119.99978 * 359.75019 * 22 4 3 24 24 C 1.38255 * 120.14603 * 0.50920 * 23 22 4 25 25 C 1.50699 * 119.92682 * 179.76682 * 24 23 22 26 26 O 1.42901 * 109.46830 * 119.72111 * 25 24 23 27 27 Si 1.86298 * 109.46950 * 359.72548 * 25 24 23 28 28 C 1.38241 * 120.14388 * 359.48603 * 24 23 22 29 29 H 1.08996 * 109.46870 * 300.00097 * 1 2 3 30 30 H 1.09001 * 109.47130 * 60.00141 * 1 2 3 31 31 H 1.08997 * 109.47260 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47219 * 299.99627 * 6 5 4 33 33 H 1.08995 * 109.47486 * 60.00094 * 6 5 4 34 34 H 0.96998 * 120.00352 * 359.97438 * 9 7 6 35 35 H 1.09002 * 113.61383 * 254.52724 * 12 10 9 36 36 H 1.09000 * 113.61472 * 25.43220 * 12 10 9 37 37 H 1.08005 * 120.00012 * 0.02562 * 16 15 13 38 38 H 1.08002 * 120.00278 * 180.29471 * 17 16 15 39 39 H 1.08007 * 119.99551 * 179.76591 * 18 17 16 40 40 H 1.08001 * 120.00431 * 179.97438 * 19 18 17 41 41 H 1.08003 * 120.00514 * 0.02562 * 20 15 13 42 42 H 1.08992 * 113.61681 * 334.57124 * 21 10 9 43 43 H 1.09002 * 113.60909 * 105.47483 * 21 10 9 44 44 H 1.08002 * 120.00132 * 180.02562 * 22 4 3 45 45 H 1.08005 * 119.92689 * 180.25343 * 23 22 4 46 46 H 1.08991 * 109.47351 * 239.72258 * 25 24 23 47 47 H 0.96708 * 114.00246 * 299.99864 * 26 25 24 48 48 H 1.48506 * 109.99834 * 180.02562 * 27 25 24 49 49 H 1.48502 * 110.00011 * 301.31529 * 27 25 24 50 50 H 1.08001 * 119.99967 * 180.23686 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1795 0.1476 -0.0002 6 6 5.6003 0.3006 -0.0014 7 6 6.2519 -1.0583 -0.0015 8 8 5.5669 -2.0593 -0.0001 9 7 7.5957 -1.1613 -0.0019 10 6 8.2291 -2.4824 -0.0015 11 1 7.5936 -3.2563 0.4289 12 6 8.8421 -2.8720 -1.3570 13 6 10.0185 -3.4680 -0.5627 14 1 9.8741 -4.5125 -0.2862 15 6 11.3644 -3.2093 -1.1894 16 6 11.6172 -2.0000 -1.8093 17 6 12.8535 -1.7606 -2.3796 18 6 13.8333 -2.7349 -2.3395 19 6 13.5787 -3.9464 -1.7246 20 6 12.3443 -4.1836 -1.1493 21 6 9.6611 -2.4787 0.5591 22 6 4.0603 2.5233 -0.0011 23 6 3.3030 3.6798 -0.0063 24 6 1.9224 3.6057 -0.0004 25 6 1.1017 4.8696 -0.0008 26 8 0.2773 4.9017 -1.1675 27 14 2.2366 6.3470 -0.0015 28 6 1.2933 2.3748 0.0001 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 5.9059 0.8496 -0.8920 33 1 5.9072 0.8510 0.8879 34 1 8.1435 -0.3608 -0.0026 35 1 8.2605 -3.6157 -1.9017 36 1 9.1198 -2.0165 -1.9727 37 1 10.8503 -1.2403 -1.8441 38 1 13.0526 -0.8139 -2.8598 39 1 14.7980 -2.5493 -2.7884 40 1 14.3441 -4.7078 -1.6936 41 1 12.1452 -5.1303 -0.6692 42 1 10.1631 -1.5156 0.4682 43 1 9.7395 -2.9054 1.5591 44 1 5.1387 2.5839 -0.0019 45 1 3.7909 4.6434 -0.0108 46 1 0.4730 4.8949 0.8892 47 1 0.7711 4.8819 -1.9988 48 1 1.4394 7.5999 -0.0013 49 1 3.1214 6.3084 1.1906 50 1 0.2147 2.3196 0.0009 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:33 Heat of formation + Delta-G solvation = -50.692917 kcal Electronic energy + Delta-G solvation = -31931.939363 eV Core-core repulsion = 27471.742157 eV Total energy + Delta-G solvation = -4460.197205 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.85147 -41.41571 -40.44123 -39.39166 -38.91242 -38.50921 -36.91352 -34.83462 -32.14901 -31.82938 -31.65050 -31.41602 -29.53890 -28.46427 -26.70579 -26.30403 -25.73603 -23.70015 -23.51050 -22.70138 -22.27164 -21.64197 -20.35144 -19.79009 -18.59604 -18.32239 -18.09875 -17.86282 -17.51580 -17.17363 -16.86829 -16.66584 -16.43174 -16.09244 -15.98286 -15.77355 -15.66963 -15.54364 -15.29068 -15.19584 -14.71363 -14.32732 -14.27249 -14.16427 -13.94229 -13.76531 -13.59320 -13.48844 -13.43871 -13.09875 -12.66219 -12.55856 -12.51300 -12.28822 -12.17156 -12.06647 -12.00402 -11.80834 -11.73549 -11.64218 -11.45322 -10.92714 -10.43654 -10.12981 -9.79062 -9.78796 -9.52925 -8.91102 -4.96347 0.16835 0.27842 0.45473 0.52804 1.34232 1.45133 1.51118 1.67368 2.00466 2.30620 2.56525 2.59779 2.86086 3.44747 3.49127 3.53920 3.68181 3.70021 3.74259 3.87026 3.90736 3.94260 4.05260 4.06980 4.13394 4.14226 4.16499 4.20486 4.28519 4.29648 4.31841 4.36443 4.49941 4.56453 4.64128 4.64518 4.65405 4.70814 4.75019 4.84605 4.97568 5.00509 5.02674 5.11691 5.12439 5.18929 5.22489 5.37127 5.51523 5.59818 5.61348 5.67225 5.75920 5.97172 6.15105 6.42857 6.55058 6.77811 7.15650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.084 3.916 5 O -0.315 6.315 6 C 0.034 3.966 7 C 0.512 3.488 8 O -0.574 6.574 9 N -0.698 5.698 10 C 0.120 3.880 11 H 0.093 0.907 12 C -0.141 4.141 13 C -0.070 4.070 14 H 0.101 0.899 15 C -0.076 4.076 16 C -0.123 4.123 17 C -0.128 4.128 18 C -0.138 4.138 19 C -0.132 4.132 20 C -0.132 4.132 21 C -0.120 4.120 22 C -0.159 4.159 23 C -0.110 4.110 24 C -0.119 4.119 25 C -0.077 4.077 26 O -0.558 6.558 27 Si 0.788 3.212 28 C -0.153 4.153 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.422 0.578 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.082 0.918 44 H 0.177 0.823 45 H 0.159 0.841 46 H 0.104 0.896 47 H 0.395 0.605 48 H -0.303 1.303 49 H -0.278 1.278 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.719 5.596 -1.710 8.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.031 3.969 4 C 0.039 3.961 5 O -0.228 6.228 6 C -0.044 4.044 7 C 0.298 3.702 8 O -0.453 6.453 9 N -0.351 5.351 10 C 0.015 3.985 11 H 0.111 0.889 12 C -0.180 4.180 13 C -0.088 4.088 14 H 0.119 0.881 15 C -0.076 4.076 16 C -0.141 4.141 17 C -0.146 4.146 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.150 4.150 21 C -0.157 4.157 22 C -0.177 4.177 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.186 4.186 26 O -0.366 6.366 27 Si 0.693 3.307 28 C -0.171 4.171 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.261 0.739 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.194 0.806 45 H 0.176 0.824 46 H 0.121 0.879 47 H 0.245 0.755 48 H -0.232 1.232 49 H -0.205 1.205 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.017 5.207 -0.840 8.002 hybrid contribution -0.558 -0.457 0.387 0.819 sum 5.459 4.750 -0.453 7.251 Atomic orbital electron populations 1.23276 0.76843 1.05185 1.02063 1.86188 1.22969 1.26681 1.89099 1.18677 0.89947 0.85578 1.02708 1.18596 0.88180 0.86579 1.02759 1.86224 1.18279 1.29055 1.89291 1.22801 0.79309 0.95203 1.07074 1.20631 0.83203 0.90830 0.75497 1.90772 1.64170 1.40259 1.50076 1.45663 1.05019 1.10035 1.74425 1.22481 0.93163 0.85258 0.97582 0.88899 1.23638 0.96008 1.01526 0.96811 1.21333 0.90608 1.00272 0.96631 0.88082 1.19778 0.95102 0.94390 0.98377 1.21231 0.97471 0.97149 0.98227 1.21452 0.93585 0.99936 0.99579 1.21456 1.00232 0.94064 0.99888 1.21417 0.97450 0.97875 0.98218 1.21314 0.93687 0.99666 1.00330 1.23388 0.93020 1.00654 0.98688 1.21389 1.02299 0.89282 1.04734 1.21015 0.92272 0.99022 1.00452 1.20205 0.94512 0.94802 1.02454 1.25275 0.99809 1.02518 0.91000 1.86463 1.36787 1.96943 1.16382 0.93626 0.78259 0.72363 0.86409 1.20998 1.00479 0.90588 1.05079 0.91957 0.91650 0.87094 0.85221 0.85581 0.73945 0.92004 0.88009 0.84280 0.84480 0.85048 0.85151 0.85400 0.87512 0.89980 0.80591 0.82353 0.87895 0.75459 1.23189 1.20494 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.34 -3.85 10.28 -79.54 -0.82 -4.66 16 3 C 0.08 0.63 6.70 22.57 0.15 0.78 16 4 C 0.08 0.46 6.70 22.57 0.15 0.61 16 5 O -0.31 -2.69 9.45 -67.02 -0.63 -3.32 16 6 C 0.03 -0.09 5.22 71.24 0.37 0.28 16 7 C 0.51 1.76 7.91 87.66 0.69 2.45 16 8 O -0.57 -9.30 16.12 15.99 0.26 -9.04 16 9 N -0.70 3.10 5.36 -440.01 -2.36 0.74 16 10 C 0.12 -0.23 4.21 45.52 0.19 -0.04 16 11 H 0.09 0.35 7.50 -2.39 -0.02 0.33 16 12 C -0.14 0.33 7.27 31.18 0.23 0.55 16 13 C -0.07 0.21 3.98 -10.95 -0.04 0.17 16 14 H 0.10 -0.28 8.09 -2.39 -0.02 -0.30 16 15 C -0.08 0.07 5.29 -19.87 -0.11 -0.04 16 16 C -0.12 0.28 8.63 22.27 0.19 0.47 16 17 C -0.13 0.18 10.05 22.27 0.22 0.40 16 18 C -0.14 0.01 10.05 22.27 0.22 0.23 16 19 C -0.13 -0.08 10.05 22.27 0.22 0.14 16 20 C -0.13 -0.08 9.71 22.27 0.22 0.14 16 21 C -0.12 0.68 7.30 31.12 0.23 0.91 16 22 C -0.16 0.45 9.04 22.35 0.20 0.65 16 23 C -0.11 0.38 8.66 22.28 0.19 0.58 16 24 C -0.12 -0.01 5.39 -19.86 -0.11 -0.12 16 25 C -0.08 0.09 2.82 71.24 0.20 0.29 16 26 O -0.56 0.10 12.77 -148.98 -1.90 -1.80 16 27 Si 0.79 -3.39 29.78 68.60 2.04 -1.35 16 28 C -0.15 -0.62 8.60 22.35 0.19 -0.43 16 29 H 0.06 0.05 7.66 -2.39 -0.02 0.03 16 30 H 0.06 0.04 7.66 -2.39 -0.02 0.02 16 31 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.13 -1.33 7.66 -2.39 -0.02 -1.35 16 33 H 0.13 -1.22 7.66 -2.39 -0.02 -1.23 16 34 H 0.42 -5.36 8.71 -92.71 -0.81 -6.17 16 35 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.10 -0.48 6.31 -2.39 -0.02 -0.50 16 37 H 0.14 -0.96 6.65 -2.91 -0.02 -0.97 16 38 H 0.14 -0.72 8.06 -2.91 -0.02 -0.74 16 39 H 0.13 -0.41 8.06 -2.91 -0.02 -0.43 16 40 H 0.13 -0.28 8.06 -2.91 -0.02 -0.31 16 41 H 0.13 -0.22 8.05 -2.91 -0.02 -0.25 16 42 H 0.11 -0.93 7.70 -2.39 -0.02 -0.95 16 43 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.18 -1.99 6.30 -2.91 -0.02 -2.01 16 45 H 0.16 -1.48 4.87 -2.91 -0.01 -1.49 16 46 H 0.10 0.04 7.96 -2.39 -0.02 0.02 16 47 H 0.40 -3.27 8.70 -74.05 -0.64 -3.91 16 48 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 49 H -0.28 0.20 7.11 99.48 0.71 0.90 16 50 H 0.14 0.40 6.30 -2.91 -0.02 0.38 16 Total: 0.00 -30.92 411.75 0.90 -30.02 By element: Atomic # 1 Polarization: -19.37 SS G_CDS: -0.42 Total: -19.79 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 4.74 Total: 9.21 kcal Atomic # 7 Polarization: 3.10 SS G_CDS: -2.36 Total: 0.74 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -3.10 Total: -18.83 kcal Atomic # 14 Polarization: -3.39 SS G_CDS: 2.04 Total: -1.35 kcal Total: -30.92 0.90 -30.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.678 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds