Wall clock time and date at job start Sun Mar 7 2021 08:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86304 * 109.47247 * 2 1 4 4 C 1.50697 * 109.46978 * 119.99635 * 2 1 3 5 5 C 1.35450 * 125.56807 * 245.02435 * 4 2 1 6 6 C 1.39836 * 107.87149 * 179.97438 * 5 4 2 7 7 C 1.37875 * 107.07910 * 0.02562 * 6 5 4 8 8 C 1.46683 * 126.22816 * 180.02562 * 7 6 5 9 9 O 1.21687 * 120.00100 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99469 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99857 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.90463 * 336.25812 * 11 10 8 13 13 C 1.53780 * 113.61288 * 107.50417 * 11 10 8 14 14 C 1.53776 * 87.08140 * 139.98574 * 13 11 10 15 15 H 1.08999 * 113.69502 * 89.13028 * 14 13 11 16 16 C 1.50706 * 113.61107 * 220.02213 * 14 13 11 17 17 C 1.38233 * 120.00109 * 37.21915 * 16 14 13 18 18 C 1.38238 * 119.99754 * 179.76611 * 17 16 14 19 19 C 1.38234 * 120.00038 * 0.48818 * 18 17 16 20 20 C 1.38238 * 120.00047 * 359.78460 * 19 18 17 21 21 C 1.38235 * 120.00108 * 359.96171 * 20 19 18 22 22 C 1.53775 * 113.61822 * 205.00369 * 11 10 8 23 23 N 1.35535 * 125.56643 * 65.29764 * 4 2 1 24 24 H 0.96701 * 114.00481 * 300.00387 * 1 2 3 25 25 H 1.09002 * 109.47399 * 239.99923 * 2 1 3 26 26 H 1.48498 * 109.99893 * 299.99763 * 3 2 1 27 27 H 1.48502 * 110.00075 * 61.31495 * 3 2 1 28 28 H 1.08008 * 126.06511 * 0.02562 * 5 4 2 29 29 H 1.07999 * 126.46097 * 179.97438 * 6 5 4 30 30 H 0.97000 * 120.00138 * 0.02562 * 10 8 7 31 31 H 1.08996 * 113.61438 * 25.43396 * 13 11 10 32 32 H 1.09006 * 113.61530 * 254.53398 * 13 11 10 33 33 H 1.08004 * 119.99934 * 0.02562 * 17 16 14 34 34 H 1.07999 * 119.99931 * 180.25459 * 18 17 16 35 35 H 1.08001 * 120.00294 * 179.76932 * 19 18 17 36 36 H 1.08000 * 120.00559 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.00165 * 179.97438 * 21 20 19 38 38 H 1.08999 * 113.61967 * 105.46923 * 22 11 10 39 39 H 1.09003 * 113.68863 * 334.58029 * 22 11 10 40 40 H 0.97001 * 125.67537 * 0.06783 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6325 -0.1392 2.2388 6 6 2.9068 -1.1306 3.1861 7 6 2.3532 -2.3030 2.7171 8 6 2.3935 -3.6085 3.3846 9 8 2.9555 -3.7263 4.4574 10 7 1.8079 -4.6777 2.8095 11 6 1.8486 -5.9817 3.4759 12 1 2.6818 -6.0765 4.1722 13 6 0.4972 -6.4122 4.0702 14 6 0.8199 -7.8313 3.5737 15 1 1.3718 -8.4331 4.2958 16 6 -0.3701 -8.5544 2.9972 17 6 -1.3067 -7.8608 2.2538 18 6 -2.3957 -8.5250 1.7210 19 6 -2.5533 -9.8808 1.9400 20 6 -1.6196 -10.5732 2.6881 21 6 -0.5279 -9.9101 3.2165 22 6 1.7139 -7.1712 2.5107 23 7 1.7596 -2.0261 1.5064 24 1 -0.3934 0.4417 0.7650 25 1 1.7924 -0.5138 -0.8900 26 1 1.5616 2.4679 -1.2085 27 1 1.5879 2.4586 1.2242 28 1 2.9268 0.8982 2.3007 29 1 3.4506 -1.0024 4.1103 30 1 1.3603 -4.5838 1.9541 31 1 -0.3618 -5.9607 3.5737 32 1 0.4514 -6.3294 5.1561 33 1 -1.1855 -6.8008 2.0858 34 1 -3.1253 -7.9840 1.1368 35 1 -3.4061 -10.3990 1.5268 36 1 -1.7429 -11.6324 2.8596 37 1 0.2014 -10.4510 3.8013 38 1 2.6505 -7.7013 2.3375 39 1 1.1880 -6.9286 1.5873 40 1 1.2946 -2.6659 0.9449 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:43 Heat of formation + Delta-G solvation = 31.024724 kcal Electronic energy + Delta-G solvation = -22989.771342 eV Core-core repulsion = 19544.357530 eV Total energy + Delta-G solvation = -3445.413811 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.55059 -41.36583 -40.09527 -38.67961 -37.81389 -34.94085 -32.30265 -31.88999 -31.73666 -31.16173 -27.30578 -26.75816 -25.74976 -23.70421 -23.43467 -22.22542 -21.47534 -21.29472 -20.55637 -19.62532 -18.23546 -18.17249 -17.11403 -16.69928 -16.50791 -16.35734 -16.06760 -15.79862 -15.39720 -15.26574 -15.12475 -14.60816 -14.40457 -14.29575 -14.16859 -14.01967 -13.95321 -13.64752 -13.50947 -13.17234 -12.59125 -12.36210 -12.33702 -11.91152 -11.85655 -11.72394 -11.51964 -11.25458 -10.82547 -10.25501 -10.08084 -9.84243 -9.58200 -9.29560 -4.82500 0.28029 0.40755 0.47698 1.22866 1.53850 1.70073 1.89333 2.00734 2.21581 2.24997 2.81061 3.35503 3.40414 3.59160 3.62962 3.67896 3.77997 3.89456 4.01968 4.11538 4.15452 4.25051 4.26724 4.31513 4.50318 4.53085 4.59131 4.65199 4.68742 4.78927 4.91145 4.95895 4.97445 5.05596 5.10664 5.13110 5.17317 5.43282 5.56305 5.58403 5.62264 5.71060 5.78662 6.10034 6.26973 6.40280 6.44825 7.01807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.063 4.063 3 Si 0.794 3.206 4 C 0.033 3.967 5 C -0.206 4.206 6 C -0.118 4.118 7 C -0.064 4.064 8 C 0.589 3.411 9 O -0.571 6.571 10 N -0.706 5.706 11 C 0.120 3.880 12 H 0.104 0.896 13 C -0.142 4.142 14 C -0.067 4.067 15 H 0.107 0.893 16 C -0.077 4.077 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.138 4.138 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.123 4.123 23 N -0.511 5.511 24 H 0.390 0.610 25 H 0.135 0.865 26 H -0.299 1.299 27 H -0.282 1.282 28 H 0.166 0.834 29 H 0.145 0.855 30 H 0.409 0.591 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 -0.463 -4.481 4.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.171 4.171 3 Si 0.697 3.303 4 C -0.086 4.086 5 C -0.229 4.229 6 C -0.145 4.145 7 C -0.177 4.177 8 C 0.378 3.622 9 O -0.450 6.450 10 N -0.356 5.356 11 C 0.016 3.984 12 H 0.122 0.878 13 C -0.181 4.181 14 C -0.085 4.085 15 H 0.125 0.875 16 C -0.077 4.077 17 C -0.143 4.143 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.161 4.161 23 N -0.109 5.109 24 H 0.239 0.761 25 H 0.153 0.847 26 H -0.227 1.227 27 H -0.209 1.209 28 H 0.183 0.817 29 H 0.163 0.837 30 H 0.245 0.755 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -0.120 -0.212 -4.337 4.344 hybrid contribution -1.587 -0.606 0.170 1.707 sum -1.707 -0.818 -4.167 4.577 Atomic orbital electron populations 1.86578 1.18115 1.80520 1.50442 1.25060 0.83595 1.12168 0.96310 0.93280 0.90225 0.70180 0.76583 1.21256 1.03806 0.84108 0.99450 1.20945 1.06107 1.00845 0.95052 1.21493 1.01341 0.91042 1.00615 1.20314 1.10893 0.95424 0.91115 1.17286 0.77770 0.83058 0.84121 1.90841 1.46215 1.85083 1.22846 1.45760 1.56740 1.08411 1.24703 1.22557 0.98783 0.80838 0.96250 0.87850 1.23601 0.97797 0.95161 1.01531 1.21306 0.94264 0.94685 0.98279 0.87464 1.19797 0.96110 0.93866 0.97934 1.21194 0.94518 1.00460 0.98173 1.21430 0.98349 0.94971 0.99993 1.21458 0.99861 0.95041 0.99220 1.21440 0.94697 1.00841 0.97812 1.21334 0.98524 0.94406 1.00464 1.23398 1.00679 0.94539 0.97454 1.41890 1.42823 1.09518 1.16651 0.76064 0.84707 1.22679 1.20853 0.81677 0.83709 0.75456 0.88766 0.91472 0.84903 0.84774 0.84973 0.84883 0.85010 0.89646 0.88258 0.73264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.30 12.88 -148.98 -1.92 -0.62 16 2 C -0.06 0.33 3.08 71.23 0.22 0.55 16 3 Si 0.79 -4.18 30.56 68.60 2.10 -2.09 16 4 C 0.03 -0.09 6.46 41.34 0.27 0.18 16 5 C -0.21 0.13 9.32 22.01 0.21 0.34 16 6 C -0.12 -0.46 10.65 22.57 0.24 -0.22 16 7 C -0.06 -0.19 7.06 40.35 0.28 0.10 16 8 C 0.59 3.38 7.79 86.45 0.67 4.05 16 9 O -0.57 -8.25 16.48 -4.31 -0.07 -8.32 16 10 N -0.71 1.04 5.35 -444.00 -2.38 -1.33 16 11 C 0.12 -0.12 4.24 45.52 0.19 0.07 16 12 H 0.10 0.32 7.46 -2.39 -0.02 0.31 16 13 C -0.14 0.21 7.25 31.12 0.23 0.43 16 14 C -0.07 0.18 3.98 -11.01 -0.04 0.13 16 15 H 0.11 -0.35 8.09 -2.39 -0.02 -0.37 16 16 C -0.08 0.01 5.29 -19.86 -0.11 -0.10 16 17 C -0.13 0.08 8.62 22.27 0.19 0.27 16 18 C -0.13 -0.01 10.05 22.27 0.22 0.21 16 19 C -0.14 -0.11 10.05 22.27 0.22 0.12 16 20 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 21 C -0.13 -0.10 9.71 22.27 0.22 0.11 16 22 C -0.12 0.56 7.30 31.12 0.23 0.79 16 23 N -0.51 1.57 5.99 -171.93 -1.03 0.54 16 24 H 0.39 -2.67 8.70 -74.06 -0.64 -3.31 16 25 H 0.14 -1.09 7.96 -2.39 -0.02 -1.11 16 26 H -0.30 -0.65 7.11 99.48 0.71 0.06 16 27 H -0.28 0.17 7.11 99.48 0.71 0.88 16 28 H 0.17 -0.74 6.19 -2.91 -0.02 -0.76 16 29 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 30 H 0.41 -3.12 7.86 -92.71 -0.73 -3.85 16 31 H 0.09 -0.25 6.30 -2.39 -0.02 -0.26 16 32 H 0.07 0.07 8.14 -2.38 -0.02 0.05 16 33 H 0.13 -0.57 6.64 -2.91 -0.02 -0.59 16 34 H 0.13 -0.45 8.06 -2.91 -0.02 -0.47 16 35 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 36 H 0.13 -0.29 8.06 -2.91 -0.02 -0.32 16 37 H 0.13 -0.28 8.05 -2.91 -0.02 -0.30 16 38 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H 0.10 -0.65 7.71 -2.39 -0.02 -0.67 16 40 H 0.43 -3.57 8.19 -92.71 -0.76 -4.33 16 Total: 0.00 -19.02 338.05 -0.83 -19.86 By element: Atomic # 1 Polarization: -14.17 SS G_CDS: -1.00 Total: -15.17 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 3.47 Total: 7.13 kcal Atomic # 7 Polarization: 2.61 SS G_CDS: -3.41 Total: -0.79 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -1.99 Total: -8.93 kcal Atomic # 14 Polarization: -4.18 SS G_CDS: 2.10 Total: -2.09 kcal Total: -19.02 -0.83 -19.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.882 kcal (2) G-P(sol) polarization free energy of solvation -19.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds