Wall clock time and date at job start Sun Mar 7 2021 08:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86295 * 109.47189 * 2 1 4 4 C 1.50706 * 109.46915 * 120.00010 * 2 1 3 5 5 C 1.32769 * 124.71242 * 65.00076 * 4 2 1 6 6 C 1.44424 * 113.08220 * 179.97438 * 5 4 2 7 7 C 1.47188 * 123.45920 * 179.97438 * 6 5 4 8 8 O 1.21637 * 120.00112 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99993 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99911 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.84471 * 336.19008 * 10 9 7 12 12 C 1.53771 * 113.61536 * 107.49865 * 10 9 7 13 13 C 1.53778 * 87.08409 * 139.97828 * 12 10 9 14 14 H 1.09000 * 113.69094 * 89.12206 * 13 12 10 15 15 C 1.50693 * 113.61778 * 220.01795 * 13 12 10 16 16 C 1.38233 * 120.00207 * 217.49163 * 15 13 12 17 17 C 1.38234 * 120.00037 * 179.72405 * 16 15 13 18 18 C 1.38235 * 120.00220 * 0.28719 * 17 16 15 19 19 C 1.38238 * 119.99712 * 359.97124 * 18 17 16 20 20 C 1.38234 * 120.00028 * 359.97438 * 19 18 17 21 21 C 1.53774 * 113.61217 * 204.99671 * 10 9 7 22 22 C 1.36006 * 113.07855 * 0.27121 * 6 5 4 23 23 S 1.70449 * 110.81596 * 359.58990 * 22 6 5 24 24 H 0.96699 * 113.99904 * 300.00157 * 1 2 3 25 25 H 1.09005 * 109.47066 * 239.99824 * 2 1 3 26 26 H 1.48500 * 110.00219 * 299.99819 * 3 2 1 27 27 H 1.48497 * 110.00276 * 61.31988 * 3 2 1 28 28 H 1.08003 * 123.45477 * 0.02562 * 5 4 2 29 29 H 0.96995 * 119.99959 * 359.97438 * 9 7 6 30 30 H 1.09007 * 113.61480 * 25.43197 * 12 10 9 31 31 H 1.09001 * 113.61774 * 254.52832 * 12 10 9 32 32 H 1.08002 * 120.00157 * 0.02562 * 16 15 13 33 33 H 1.07999 * 120.00009 * 180.25939 * 17 16 15 34 34 H 1.07996 * 120.00490 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.99691 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.99968 * 179.97438 * 20 19 18 37 37 H 1.08998 * 113.61604 * 105.46729 * 21 10 9 38 38 H 1.09005 * 113.69041 * 334.57927 * 21 10 9 39 39 H 1.08000 * 124.59326 * 179.70901 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7485 -2.0003 1.4864 6 6 2.3365 -2.4183 2.7376 7 6 2.2695 -3.7984 3.2448 8 8 1.6965 -4.6561 2.6002 9 7 2.8431 -4.1118 4.4235 10 6 2.7769 -5.4856 4.9280 11 1 1.9357 -6.0461 4.5202 12 6 4.1165 -6.2364 4.8482 13 6 3.7761 -6.8299 6.2254 14 1 3.2090 -7.7594 6.1736 15 6 4.9594 -6.9173 7.1543 16 6 5.0945 -8.0012 8.0015 17 6 6.1830 -8.0842 8.8496 18 6 7.1333 -7.0803 8.8548 19 6 6.9954 -5.9938 8.0113 20 6 5.9076 -5.9114 7.1625 21 6 2.9012 -5.5868 6.4574 22 6 2.9529 -1.4043 3.4020 23 16 2.8398 0.0523 2.5240 24 1 -0.3933 0.4417 0.7650 25 1 1.7924 -0.5139 -0.8900 26 1 1.5616 2.4679 -1.2085 27 1 1.5880 2.4585 1.2242 28 1 1.2155 -2.6686 0.8262 29 1 3.3004 -3.4279 4.9373 30 1 4.9865 -5.5796 4.8588 31 1 4.1546 -6.9781 4.0504 32 1 4.3522 -8.7857 7.9974 33 1 6.2907 -8.9331 9.5085 34 1 7.9835 -7.1449 9.5176 35 1 7.7377 -5.2093 8.0156 36 1 5.7997 -5.0623 6.5038 37 1 1.9580 -5.8040 6.9587 38 1 3.4384 -4.7529 6.9092 39 1 3.4487 -1.5082 4.3559 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16147626_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:52 Heat of formation + Delta-G solvation = 16.250416 kcal Electronic energy + Delta-G solvation = -22541.410270 eV Core-core repulsion = 19121.707814 eV Total energy + Delta-G solvation = -3419.702456 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56068 -40.47760 -39.10323 -38.50597 -37.12634 -34.76694 -32.17413 -31.83298 -31.31960 -27.01909 -26.80854 -26.71059 -25.01259 -23.62707 -22.59173 -21.85180 -20.86520 -20.12625 -19.01587 -18.26573 -18.02076 -17.63267 -16.92732 -16.49150 -16.40102 -16.00319 -15.88112 -15.63402 -15.33070 -15.20072 -14.48280 -14.36246 -14.25774 -14.09942 -13.93317 -13.68325 -13.59728 -13.57376 -13.09330 -12.72051 -12.58700 -12.41986 -12.36249 -11.88044 -11.82251 -11.71887 -11.49622 -10.90294 -10.72496 -10.13310 -10.02324 -9.84567 -9.59130 -9.52936 -5.13607 -0.39380 0.31066 0.40150 0.47424 0.65575 0.88938 1.15550 1.48225 1.84487 2.11532 2.34470 2.80464 3.22689 3.37766 3.51287 3.61591 3.65631 3.80312 3.84146 3.92950 3.98621 4.07474 4.12389 4.21456 4.25688 4.43776 4.50484 4.55680 4.59791 4.66525 4.68469 4.73479 4.88974 4.95066 5.00620 5.05505 5.10962 5.18101 5.19698 5.49944 5.54937 5.61345 5.69715 6.07271 6.27617 6.44805 7.20850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.522 6.522 2 C -0.033 4.033 3 Si 0.650 3.350 4 C -0.242 4.242 5 C -0.053 4.053 6 C -0.155 4.155 7 C 0.579 3.421 8 O -0.531 6.531 9 N -0.716 5.716 10 C 0.124 3.876 11 H 0.119 0.881 12 C -0.144 4.144 13 C -0.071 4.071 14 H 0.103 0.897 15 C -0.070 4.070 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.136 4.136 22 C -0.207 4.207 23 S 0.197 5.803 24 H 0.378 0.622 25 H 0.128 0.872 26 H -0.234 1.234 27 H -0.238 1.238 28 H 0.157 0.843 29 H 0.399 0.601 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 2.890 3.382 5.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.329 6.329 2 C -0.145 4.145 3 Si 0.548 3.452 4 C -0.358 4.358 5 C -0.082 4.082 6 C -0.173 4.173 7 C 0.364 3.636 8 O -0.408 6.408 9 N -0.367 5.367 10 C 0.019 3.981 11 H 0.137 0.863 12 C -0.183 4.183 13 C -0.090 4.090 14 H 0.121 0.879 15 C -0.070 4.070 16 C -0.134 4.134 17 C -0.135 4.135 18 C -0.142 4.142 19 C -0.136 4.136 20 C -0.136 4.136 21 C -0.174 4.174 22 C -0.345 4.345 23 S 0.463 5.537 24 H 0.225 0.775 25 H 0.146 0.854 26 H -0.157 1.157 27 H -0.162 1.162 28 H 0.174 0.826 29 H 0.234 0.766 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.958 4.286 2.609 6.391 hybrid contribution -1.124 -1.437 0.786 1.987 sum 2.834 2.849 3.395 5.261 Atomic orbital electron populations 1.86651 1.17155 1.79877 1.49196 1.24412 0.83883 1.10084 0.96155 0.95262 0.91834 0.74952 0.83145 1.24743 1.09607 0.98513 1.02944 1.21067 0.97660 0.94429 0.95033 1.20275 1.05654 0.94060 0.97352 1.17657 0.78086 0.86994 0.80817 1.90824 1.43034 1.49680 1.57273 1.45825 1.57461 1.11517 1.21879 1.22566 0.99207 0.82427 0.93917 0.86285 1.23619 0.97995 0.99909 0.96786 1.21328 0.94603 0.98717 0.94306 0.87858 1.19636 0.95735 0.94755 0.96845 1.21092 0.98199 0.97914 0.96160 1.21197 0.94482 0.98906 0.98940 1.21203 0.99286 0.94452 0.99276 1.21167 0.97908 0.98307 0.96213 1.20978 0.94542 0.98728 0.99351 1.23457 1.00655 0.97972 0.95302 1.25789 1.05051 0.98564 1.05090 1.83158 1.50400 1.09134 1.10966 0.77456 0.85432 1.15693 1.16234 0.82590 0.76627 0.89228 0.90419 0.86006 0.85975 0.86063 0.86042 0.86228 0.90188 0.89304 0.81191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.50 12.88 -35.23 -0.45 -0.96 16 2 C -0.03 0.02 2.94 36.01 0.11 0.13 16 3 Si 0.65 -1.03 30.92 -169.99 -5.26 -6.29 16 4 C -0.24 0.05 5.65 -36.18 -0.20 -0.16 16 5 C -0.05 -0.08 9.95 -39.02 -0.39 -0.47 16 6 C -0.16 -0.16 5.98 -104.63 -0.63 -0.79 16 7 C 0.58 1.50 7.79 -12.62 -0.10 1.41 16 8 O -0.53 -3.52 16.39 5.24 0.09 -3.43 16 9 N -0.72 0.40 5.32 -54.17 -0.29 0.11 16 10 C 0.12 -0.06 4.24 -67.12 -0.28 -0.34 16 11 H 0.12 0.14 7.46 -51.93 -0.39 -0.24 16 12 C -0.14 0.12 7.25 -25.93 -0.19 -0.07 16 13 C -0.07 0.08 3.98 -90.96 -0.36 -0.28 16 14 H 0.10 -0.16 8.09 -51.93 -0.42 -0.58 16 15 C -0.07 0.00 5.29 -104.63 -0.55 -0.56 16 16 C -0.12 -0.04 9.71 -39.58 -0.38 -0.43 16 17 C -0.12 -0.05 10.05 -39.58 -0.40 -0.44 16 18 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 19 C -0.12 -0.01 10.05 -39.58 -0.40 -0.40 16 20 C -0.12 0.02 8.60 -39.58 -0.34 -0.32 16 21 C -0.14 0.25 7.30 -25.92 -0.19 0.06 16 22 C -0.21 0.34 10.38 29.93 0.31 0.65 16 23 S 0.20 -0.37 20.20 -107.50 -2.17 -2.54 16 24 H 0.38 -0.75 8.70 45.56 0.40 -0.36 16 25 H 0.13 -0.17 7.96 -51.93 -0.41 -0.58 16 26 H -0.23 -0.31 7.11 56.52 0.40 0.09 16 27 H -0.24 0.04 7.11 56.52 0.40 0.44 16 28 H 0.16 0.40 8.06 -52.48 -0.42 -0.02 16 29 H 0.40 -1.32 7.23 -40.82 -0.30 -1.61 16 30 H 0.09 -0.11 6.32 -51.92 -0.33 -0.44 16 31 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 32 H 0.12 -0.13 8.05 -52.49 -0.42 -0.55 16 33 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 34 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 35 H 0.12 -0.20 8.06 -52.49 -0.42 -0.62 16 36 H 0.12 -0.22 6.67 -52.49 -0.35 -0.57 16 37 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 38 H 0.09 -0.22 7.69 -51.93 -0.40 -0.62 16 39 H 0.17 -0.78 7.01 -52.49 -0.37 -1.15 16 LS Contribution 342.85 15.07 5.17 5.17 Total: 0.00 -7.29 342.85 -12.04 -19.33 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: -4.72 Total: -8.95 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -4.40 Total: -2.44 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -0.29 Total: 0.11 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.37 Total: -4.39 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: -5.26 Total: -6.29 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -2.17 Total: -2.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -7.29 -12.04 -19.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.577 kcal (2) G-P(sol) polarization free energy of solvation -7.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds