Wall clock time and date at job start Sun Mar 7 2021 08:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86295 * 109.47189 * 2 1 4 4 C 1.50706 * 109.46915 * 120.00010 * 2 1 3 5 5 C 1.32769 * 124.71242 * 65.00076 * 4 2 1 6 6 C 1.44424 * 113.08220 * 179.97438 * 5 4 2 7 7 C 1.47188 * 123.45920 * 179.97438 * 6 5 4 8 8 O 1.21637 * 120.00112 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99993 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99911 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.84471 * 336.19008 * 10 9 7 12 12 C 1.53771 * 113.61536 * 107.49865 * 10 9 7 13 13 C 1.53778 * 87.08409 * 139.97828 * 12 10 9 14 14 H 1.09000 * 113.69094 * 89.12206 * 13 12 10 15 15 C 1.50693 * 113.61778 * 220.01795 * 13 12 10 16 16 C 1.38233 * 120.00207 * 217.49163 * 15 13 12 17 17 C 1.38234 * 120.00037 * 179.72405 * 16 15 13 18 18 C 1.38235 * 120.00220 * 0.28719 * 17 16 15 19 19 C 1.38238 * 119.99712 * 359.97124 * 18 17 16 20 20 C 1.38234 * 120.00028 * 359.97438 * 19 18 17 21 21 C 1.53774 * 113.61217 * 204.99671 * 10 9 7 22 22 C 1.36006 * 113.07855 * 0.27121 * 6 5 4 23 23 S 1.70449 * 110.81596 * 359.58990 * 22 6 5 24 24 H 0.96699 * 113.99904 * 300.00157 * 1 2 3 25 25 H 1.09005 * 109.47066 * 239.99824 * 2 1 3 26 26 H 1.48500 * 110.00219 * 299.99819 * 3 2 1 27 27 H 1.48497 * 110.00276 * 61.31988 * 3 2 1 28 28 H 1.08003 * 123.45477 * 0.02562 * 5 4 2 29 29 H 0.96995 * 119.99959 * 359.97438 * 9 7 6 30 30 H 1.09007 * 113.61480 * 25.43197 * 12 10 9 31 31 H 1.09001 * 113.61774 * 254.52832 * 12 10 9 32 32 H 1.08002 * 120.00157 * 0.02562 * 16 15 13 33 33 H 1.07999 * 120.00009 * 180.25939 * 17 16 15 34 34 H 1.07996 * 120.00490 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.99691 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.99968 * 179.97438 * 20 19 18 37 37 H 1.08998 * 113.61604 * 105.46729 * 21 10 9 38 38 H 1.09005 * 113.69041 * 334.57927 * 21 10 9 39 39 H 1.08000 * 124.59326 * 179.70901 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7485 -2.0003 1.4864 6 6 2.3365 -2.4183 2.7376 7 6 2.2695 -3.7984 3.2448 8 8 1.6965 -4.6561 2.6002 9 7 2.8431 -4.1118 4.4235 10 6 2.7769 -5.4856 4.9280 11 1 1.9357 -6.0461 4.5202 12 6 4.1165 -6.2364 4.8482 13 6 3.7761 -6.8299 6.2254 14 1 3.2090 -7.7594 6.1736 15 6 4.9594 -6.9173 7.1543 16 6 5.0945 -8.0012 8.0015 17 6 6.1830 -8.0842 8.8496 18 6 7.1333 -7.0803 8.8548 19 6 6.9954 -5.9938 8.0113 20 6 5.9076 -5.9114 7.1625 21 6 2.9012 -5.5868 6.4574 22 6 2.9529 -1.4043 3.4020 23 16 2.8398 0.0523 2.5240 24 1 -0.3933 0.4417 0.7650 25 1 1.7924 -0.5139 -0.8900 26 1 1.5616 2.4679 -1.2085 27 1 1.5880 2.4585 1.2242 28 1 1.2155 -2.6686 0.8262 29 1 3.3004 -3.4279 4.9373 30 1 4.9865 -5.5796 4.8588 31 1 4.1546 -6.9781 4.0504 32 1 4.3522 -8.7857 7.9974 33 1 6.2907 -8.9331 9.5085 34 1 7.9835 -7.1449 9.5176 35 1 7.7377 -5.2093 8.0156 36 1 5.7997 -5.0623 6.5038 37 1 1.9580 -5.8040 6.9587 38 1 3.4384 -4.7529 6.9092 39 1 3.4487 -1.5082 4.3559 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:51 Heat of formation + Delta-G solvation = 20.051404 kcal Electronic energy + Delta-G solvation = -22541.245447 eV Core-core repulsion = 19121.707814 eV Total energy + Delta-G solvation = -3419.537633 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.57357 -40.50799 -39.07488 -38.53588 -37.17661 -34.85018 -32.14436 -31.77401 -31.28103 -26.99389 -26.75204 -26.68558 -24.98860 -23.57015 -22.56589 -21.89022 -20.87110 -20.09349 -18.96470 -18.27667 -18.00517 -17.62569 -16.90416 -16.47297 -16.38164 -16.04140 -15.94851 -15.61266 -15.31995 -15.17646 -14.49647 -14.30973 -14.20718 -14.07684 -13.91530 -13.67635 -13.59526 -13.46438 -13.10391 -12.68524 -12.52974 -12.43583 -12.30115 -11.87611 -11.79420 -11.64396 -11.46095 -11.00182 -10.73935 -10.19569 -9.98896 -9.80318 -9.54658 -9.44601 -5.03352 -0.34177 0.39500 0.44201 0.51607 0.69762 0.81466 1.22557 1.55681 1.91211 2.10980 2.24293 2.84891 3.30651 3.44245 3.59312 3.67964 3.71925 3.88073 3.93465 3.97864 4.06380 4.15671 4.19534 4.28635 4.30869 4.49834 4.55857 4.63209 4.69418 4.71086 4.72786 4.82751 4.96045 4.99448 5.00991 5.11158 5.16563 5.17992 5.22101 5.51812 5.60138 5.65977 5.74870 6.13873 6.40713 6.46600 7.14175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.048 4.048 3 Si 0.730 3.270 4 C -0.246 4.246 5 C -0.076 4.076 6 C -0.183 4.183 7 C 0.575 3.425 8 O -0.585 6.585 9 N -0.699 5.699 10 C 0.119 3.881 11 H 0.097 0.903 12 C -0.141 4.141 13 C -0.067 4.067 14 H 0.103 0.897 15 C -0.077 4.077 16 C -0.131 4.131 17 C -0.131 4.131 18 C -0.138 4.138 19 C -0.128 4.128 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.189 4.189 23 S 0.251 5.749 24 H 0.388 0.612 25 H 0.128 0.872 26 H -0.277 1.277 27 H -0.248 1.248 28 H 0.131 0.869 29 H 0.415 0.585 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.366 4.561 4.881 8.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.158 4.158 3 Si 0.630 3.370 4 C -0.362 4.362 5 C -0.105 4.105 6 C -0.201 4.201 7 C 0.362 3.638 8 O -0.467 6.467 9 N -0.350 5.350 10 C 0.014 3.986 11 H 0.115 0.885 12 C -0.179 4.179 13 C -0.086 4.086 14 H 0.122 0.878 15 C -0.077 4.077 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.156 4.156 19 C -0.146 4.146 20 C -0.142 4.142 21 C -0.160 4.160 22 C -0.328 4.328 23 S 0.517 5.483 24 H 0.238 0.762 25 H 0.146 0.854 26 H -0.203 1.203 27 H -0.173 1.173 28 H 0.149 0.851 29 H 0.253 0.747 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.346 5.954 4.155 9.017 hybrid contribution -1.541 -1.918 0.310 2.480 sum 3.805 4.036 4.466 7.121 Atomic orbital electron populations 1.86615 1.18222 1.80429 1.50088 1.24745 0.83287 1.11509 0.96303 0.94394 0.90460 0.72042 0.80067 1.24819 1.09589 0.98135 1.03695 1.20997 0.98844 0.95024 0.95684 1.20107 1.08039 0.93969 0.97964 1.17976 0.77471 0.87253 0.81093 1.90790 1.45678 1.51252 1.58963 1.45697 1.56444 1.11925 1.20946 1.22516 0.98731 0.82344 0.95016 0.88520 1.23597 0.97980 0.99697 0.96640 1.21293 0.94456 0.99125 0.93752 0.87841 1.19783 0.96142 0.94856 0.96910 1.21315 0.98612 0.98471 0.96506 1.21423 0.94676 0.99480 0.99315 1.21458 0.99732 0.94660 0.99748 1.21446 0.98393 0.98654 0.96086 1.21219 0.94302 0.99164 0.99495 1.23401 1.00744 0.97985 0.93863 1.26179 1.02977 0.97830 1.05765 1.82994 1.48491 1.07771 1.09036 0.76227 0.85414 1.20300 1.17336 0.85098 0.74715 0.88288 0.91743 0.85280 0.85053 0.84988 0.84525 0.84524 0.89958 0.87848 0.77801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.68 12.88 -148.98 -1.92 -3.60 16 2 C -0.05 0.03 2.94 71.24 0.21 0.24 16 3 Si 0.73 -2.67 30.92 68.60 2.12 -0.55 16 4 C -0.25 0.04 5.65 24.51 0.14 0.18 16 5 C -0.08 -0.37 9.95 22.67 0.23 -0.14 16 6 C -0.18 -0.46 5.98 -19.87 -0.12 -0.58 16 7 C 0.57 3.73 7.79 86.59 0.67 4.40 16 8 O -0.59 -9.52 16.39 -4.15 -0.07 -9.58 16 9 N -0.70 0.87 5.32 -443.54 -2.36 -1.49 16 10 C 0.12 -0.05 4.24 45.51 0.19 0.14 16 11 H 0.10 0.44 7.46 -2.39 -0.02 0.42 16 12 C -0.14 0.19 7.25 31.12 0.23 0.42 16 13 C -0.07 0.16 3.98 -11.02 -0.04 0.12 16 14 H 0.10 -0.27 8.09 -2.39 -0.02 -0.29 16 15 C -0.08 0.02 5.29 -19.87 -0.11 -0.08 16 16 C -0.13 -0.11 9.71 22.27 0.22 0.11 16 17 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 18 C -0.14 -0.04 10.05 22.27 0.22 0.18 16 19 C -0.13 0.10 10.05 22.27 0.22 0.33 16 20 C -0.12 0.18 8.60 22.27 0.19 0.37 16 21 C -0.12 0.54 7.30 31.12 0.23 0.76 16 22 C -0.19 0.98 10.38 67.30 0.70 1.68 16 23 S 0.25 -1.43 20.20 -56.49 -1.14 -2.57 16 24 H 0.39 -1.26 8.70 -74.06 -0.64 -1.91 16 25 H 0.13 -0.18 7.96 -2.38 -0.02 -0.20 16 26 H -0.28 -0.98 7.11 99.48 0.71 -0.27 16 27 H -0.25 0.48 7.11 99.48 0.71 1.19 16 28 H 0.13 1.18 8.06 -2.91 -0.02 1.16 16 29 H 0.41 -3.48 7.23 -92.71 -0.67 -4.15 16 30 H 0.10 -0.33 6.32 -2.38 -0.02 -0.34 16 31 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.13 -0.22 8.05 -2.91 -0.02 -0.24 16 33 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 34 H 0.13 -0.38 8.06 -2.91 -0.02 -0.40 16 35 H 0.14 -0.63 8.06 -2.91 -0.02 -0.65 16 36 H 0.14 -0.78 6.67 -2.91 -0.02 -0.79 16 37 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.10 -0.73 7.69 -2.38 -0.02 -0.75 16 39 H 0.21 -2.63 7.01 -2.91 -0.02 -2.65 16 Total: 0.00 -19.87 342.85 -0.15 -20.02 By element: Atomic # 1 Polarization: -10.28 SS G_CDS: -0.19 Total: -10.47 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 3.40 Total: 8.24 kcal Atomic # 7 Polarization: 0.87 SS G_CDS: -2.36 Total: -1.49 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -1.99 Total: -13.18 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.12 Total: -0.55 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -1.14 Total: -2.57 kcal Total: -19.87 -0.15 -20.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.068 kcal (2) G-P(sol) polarization free energy of solvation -19.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds