Wall clock time and date at job start Sun Mar 7 2021 08:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86299 * 109.47250 * 2 1 4 4 C 1.50694 * 109.47068 * 239.99874 * 2 1 3 5 5 C 1.34235 * 126.50112 * 104.96010 * 4 2 1 6 6 N 1.36831 * 109.93961 * 180.02562 * 5 4 2 7 7 C 1.46509 * 125.06402 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.46989 * 265.02723 * 7 6 5 9 9 O 1.21283 * 120.00134 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99625 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99809 * 180.02562 * 10 8 7 12 12 H 1.08998 * 112.85109 * 25.32754 * 11 10 8 13 13 C 1.53785 * 113.61615 * 156.52917 * 11 10 8 14 14 C 1.53781 * 87.08060 * 139.97867 * 13 11 10 15 15 H 1.08993 * 113.61690 * 89.20313 * 14 13 11 16 16 C 1.50708 * 113.61225 * 220.01837 * 14 13 11 17 17 C 1.38235 * 119.99576 * 59.72782 * 16 14 13 18 18 C 1.38241 * 119.99606 * 179.81315 * 17 16 14 19 19 C 1.38237 * 119.99841 * 0.41475 * 18 17 16 20 20 C 1.38237 * 120.00036 * 359.81753 * 19 18 17 21 21 C 1.38228 * 119.99942 * 240.00092 * 16 14 13 22 22 C 1.53787 * 113.61260 * 254.13206 * 11 10 8 23 23 C 1.37692 * 109.87595 * 0.02562 * 6 5 4 24 24 C 1.39079 * 133.51038 * 179.97438 * 23 6 5 25 25 C 1.37789 * 119.77774 * 180.02562 * 24 23 6 26 26 C 1.38795 * 120.66223 * 359.97438 * 25 24 23 27 27 C 1.36656 * 120.53345 * 359.97438 * 26 25 24 28 28 C 1.39595 * 119.76071 * 0.02562 * 27 26 25 29 29 H 0.96702 * 114.00361 * 59.99897 * 1 2 3 30 30 H 1.08996 * 109.47199 * 119.99915 * 2 1 3 31 31 H 1.48499 * 110.00185 * 60.00014 * 3 2 1 32 32 H 1.48502 * 110.00348 * 181.31988 * 3 2 1 33 33 H 1.08002 * 125.03146 * 0.03462 * 5 4 2 34 34 H 1.09001 * 109.46763 * 25.02457 * 7 6 5 35 35 H 1.08996 * 109.46577 * 145.02970 * 7 6 5 36 36 H 0.97001 * 120.00461 * 359.97438 * 10 8 7 37 37 H 1.09001 * 113.61237 * 254.52575 * 13 11 10 38 38 H 1.09002 * 113.61217 * 25.34635 * 13 11 10 39 39 H 1.07997 * 120.00314 * 359.97438 * 17 16 14 40 40 H 1.07997 * 120.00235 * 180.20880 * 18 17 16 41 41 H 1.07997 * 120.00110 * 179.79181 * 19 18 17 42 42 H 1.08000 * 119.99721 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.00339 * 359.97438 * 21 16 14 44 44 H 1.09004 * 113.61163 * 334.56991 * 22 11 10 45 45 H 1.09001 * 113.61383 * 105.46475 * 22 11 10 46 46 H 1.08003 * 120.11315 * 359.97438 * 24 23 6 47 47 H 1.08006 * 119.67010 * 180.02562 * 25 24 23 48 48 H 1.08000 * 119.72991 * 179.72896 * 26 25 24 49 49 H 1.07995 * 120.12118 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.4600 -0.1376 -2.3232 6 7 2.8018 -1.0990 -3.2350 7 6 3.4053 -0.8403 -4.5446 8 6 2.3247 -0.7840 -5.5934 9 8 1.1646 -0.9445 -5.2781 10 7 2.6475 -0.5561 -6.8820 11 6 1.5969 -0.5008 -7.9015 12 1 0.6259 -0.2193 -7.4939 13 6 1.9948 0.2989 -9.1534 14 6 1.2778 -0.7841 -9.9768 15 1 0.2194 -0.5803 -10.1387 16 6 2.0025 -1.1572 -11.2445 17 6 3.2876 -1.6627 -11.1826 18 6 3.9509 -2.0086 -12.3452 19 6 3.3323 -1.8408 -13.5699 20 6 2.0490 -1.3307 -13.6320 21 6 1.3843 -0.9885 -12.4692 22 6 1.5488 -1.7446 -8.8046 23 6 2.4928 -2.3457 -2.7387 24 6 2.6273 -3.6360 -3.2399 25 6 2.2132 -4.7106 -2.4834 26 6 1.6628 -4.5192 -1.2237 27 6 1.5224 -3.2601 -0.7114 28 6 1.9352 -2.1571 -1.4608 29 1 -0.3934 0.4417 -0.7650 30 1 1.7923 -0.5138 0.8900 31 1 1.5615 2.4679 1.2085 32 1 3.5346 1.7703 -0.0321 33 1 2.5958 0.9248 -2.4622 34 1 3.9362 0.1113 -4.5184 35 1 4.1050 -1.6403 -4.7865 36 1 3.5753 -0.4280 -7.1342 37 1 1.5212 1.2788 -9.2143 38 1 3.0708 0.3375 -9.3231 39 1 3.7724 -1.7900 -10.2260 40 1 4.9537 -2.4067 -12.2968 41 1 3.8517 -2.1078 -14.4784 42 1 1.5659 -1.1992 -14.5889 43 1 0.3817 -0.5897 -12.5178 44 1 2.5026 -2.2669 -8.8795 45 1 0.7157 -2.4122 -8.5844 46 1 3.0540 -3.7952 -4.2192 47 1 2.3188 -5.7120 -2.8741 48 1 1.3393 -5.3720 -0.6454 49 1 1.0928 -3.1189 0.2694 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:59:01 Heat of formation + Delta-G solvation = 59.266340 kcal Electronic energy + Delta-G solvation = -31204.321203 eV Core-core repulsion = 27064.378381 eV Total energy + Delta-G solvation = -4139.942822 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.162 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.52745 -41.39733 -40.23680 -38.71121 -38.08353 -37.57186 -34.80784 -33.99391 -31.92974 -31.72456 -31.27747 -30.23467 -28.97415 -26.69899 -26.31866 -25.34858 -23.78737 -23.56482 -22.90673 -22.24418 -21.60863 -20.69624 -20.31995 -18.59483 -18.37343 -18.12576 -17.65834 -17.26088 -16.84763 -16.43694 -16.40870 -16.25349 -16.00088 -15.80361 -15.47011 -15.35422 -15.19277 -14.85977 -14.70850 -14.43152 -14.29809 -14.17323 -14.05948 -13.92299 -13.66487 -13.44289 -13.30728 -12.98579 -12.73473 -12.57015 -12.53670 -12.29698 -12.23511 -12.11437 -11.81482 -11.79989 -11.65673 -11.45346 -11.04227 -10.54253 -10.29907 -10.08436 -9.80461 -9.53753 -9.16016 -8.62451 -4.99318 0.13789 0.44331 0.51397 0.62740 1.37308 1.42790 1.49594 1.69615 1.72034 2.00646 2.26485 2.84983 2.93824 3.46670 3.57830 3.64432 3.67849 3.71266 3.74168 3.79300 3.89326 3.94805 4.05243 4.07075 4.15458 4.17813 4.20092 4.21115 4.29912 4.30664 4.47726 4.55694 4.56631 4.63552 4.70666 4.71392 4.75143 4.78369 4.84579 4.88080 4.97957 5.03299 5.11674 5.12677 5.18411 5.23067 5.49598 5.54511 5.60144 5.65048 5.65984 5.72719 5.74862 5.75094 6.13829 6.20415 6.24542 6.52734 6.82656 7.18930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.047 4.047 3 Si 0.795 3.205 4 C -0.226 4.226 5 C 0.080 3.920 6 N -0.466 5.466 7 C 0.086 3.914 8 C 0.493 3.507 9 O -0.570 6.570 10 N -0.701 5.701 11 C 0.124 3.876 12 H 0.094 0.906 13 C -0.119 4.119 14 C -0.070 4.070 15 H 0.100 0.900 16 C -0.077 4.077 17 C -0.123 4.123 18 C -0.129 4.129 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.142 4.142 23 C 0.090 3.910 24 C -0.133 4.133 25 C -0.109 4.109 26 C -0.154 4.154 27 C -0.091 4.091 28 C -0.118 4.118 29 H 0.390 0.610 30 H 0.091 0.909 31 H -0.302 1.302 32 H -0.274 1.274 33 H 0.209 0.791 34 H 0.166 0.834 35 H 0.141 0.859 36 H 0.420 0.580 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.098 0.902 45 H 0.058 0.942 46 H 0.133 0.867 47 H 0.145 0.855 48 H 0.135 0.865 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 3.722 -7.205 10.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.156 4.156 3 Si 0.699 3.301 4 C -0.233 4.233 5 C -0.045 4.045 6 N -0.148 5.148 7 C -0.038 4.038 8 C 0.279 3.721 9 O -0.448 6.448 10 N -0.354 5.354 11 C 0.019 3.981 12 H 0.112 0.888 13 C -0.157 4.157 14 C -0.089 4.089 15 H 0.118 0.882 16 C -0.077 4.077 17 C -0.141 4.141 18 C -0.146 4.146 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.181 4.181 23 C -0.015 4.015 24 C -0.153 4.153 25 C -0.128 4.128 26 C -0.173 4.173 27 C -0.110 4.110 28 C -0.122 4.122 29 H 0.240 0.760 30 H 0.109 0.891 31 H -0.229 1.229 32 H -0.200 1.200 33 H 0.226 0.774 34 H 0.184 0.816 35 H 0.159 0.841 36 H 0.258 0.742 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.117 0.883 45 H 0.077 0.923 46 H 0.151 0.849 47 H 0.163 0.837 48 H 0.153 0.847 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.071 3.969 -6.314 9.617 hybrid contribution -0.049 -1.007 0.079 1.011 sum 6.022 2.962 -6.235 9.161 Atomic orbital electron populations 1.86440 1.18327 1.82432 1.49996 1.24701 0.84375 1.11040 0.95492 0.93979 0.77462 0.73503 0.85140 1.20799 1.11611 0.91854 0.99085 1.22083 0.99014 0.95295 0.88100 1.43456 1.53226 1.03729 1.14435 1.22015 0.93897 1.09155 0.78747 1.21424 0.90403 0.75859 0.84448 1.90805 1.22339 1.49934 1.81722 1.45808 1.11535 1.72098 1.05924 1.22396 0.92427 0.96971 0.86296 0.88778 1.23370 1.02234 0.97975 0.92155 1.21340 0.99742 0.97387 0.90456 0.88164 1.19803 0.94724 0.98807 0.94327 1.21216 0.94462 0.99309 0.99082 1.21449 1.00774 0.99804 0.92621 1.21452 0.95621 0.99876 0.98738 1.21420 0.95451 0.99083 0.98987 1.21317 1.00618 1.00669 0.92397 1.23622 1.02947 0.96913 0.94605 1.18385 1.01784 0.87122 0.94187 1.20248 1.04931 0.89160 1.00983 1.21125 0.98355 0.99073 0.94281 1.20906 1.02387 0.96984 0.97054 1.20439 0.99199 0.91862 0.99505 1.19384 1.03786 0.93975 0.95080 0.76023 0.89127 1.22949 1.20034 0.77424 0.81644 0.84130 0.74155 0.89898 0.87736 0.84360 0.84601 0.85105 0.85147 0.85345 0.88339 0.92321 0.84882 0.83734 0.84718 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.76 12.88 -148.98 -1.92 -5.68 16 2 C -0.05 -0.21 3.06 71.23 0.22 0.00 16 3 Si 0.80 -1.01 30.75 68.60 2.11 1.10 16 4 C -0.23 -1.33 5.57 -18.63 -0.10 -1.44 16 5 C 0.08 0.02 9.89 83.00 0.82 0.84 16 6 N -0.47 -0.54 2.27 -519.99 -1.18 -1.72 16 7 C 0.09 -0.70 6.48 85.63 0.56 -0.15 16 8 C 0.49 -1.17 7.90 87.66 0.69 -0.48 16 9 O -0.57 -5.36 16.04 -3.04 -0.05 -5.41 16 10 N -0.70 5.77 5.36 -440.02 -2.36 3.41 16 11 C 0.12 -0.59 4.21 45.52 0.19 -0.40 16 12 H 0.09 0.06 7.50 -2.39 -0.02 0.04 16 13 C -0.12 0.91 7.29 31.12 0.23 1.14 16 14 C -0.07 0.31 3.98 -10.95 -0.04 0.26 16 15 H 0.10 -0.40 8.09 -2.39 -0.02 -0.42 16 16 C -0.08 0.12 5.29 -19.86 -0.11 0.02 16 17 C -0.12 0.34 8.60 22.27 0.19 0.53 16 18 C -0.13 0.21 10.05 22.27 0.22 0.44 16 19 C -0.14 0.04 10.05 22.27 0.22 0.27 16 20 C -0.13 -0.03 10.05 22.27 0.22 0.20 16 21 C -0.13 0.01 9.71 22.27 0.22 0.22 16 22 C -0.14 0.55 7.27 31.18 0.23 0.77 16 23 C 0.09 0.68 6.80 39.03 0.27 0.95 16 24 C -0.13 -0.76 10.00 22.37 0.22 -0.53 16 25 C -0.11 -0.62 10.01 22.30 0.22 -0.40 16 26 C -0.15 -1.19 9.97 22.03 0.22 -0.97 16 27 C -0.09 -0.99 10.05 22.23 0.22 -0.76 16 28 C -0.12 -1.26 6.35 -20.20 -0.13 -1.38 16 29 H 0.39 -0.34 8.70 -74.06 -0.64 -0.98 16 30 H 0.09 0.64 7.96 -2.39 -0.02 0.62 16 31 H -0.30 -1.95 7.11 99.48 0.71 -1.24 16 32 H -0.27 -0.49 7.11 99.48 0.71 0.22 16 33 H 0.21 -1.83 6.35 -2.91 -0.02 -1.85 16 34 H 0.17 -2.76 8.12 -2.39 -0.02 -2.78 16 35 H 0.14 -1.78 8.14 -2.39 -0.02 -1.80 16 36 H 0.42 -6.53 8.71 -92.71 -0.81 -7.34 16 37 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 38 H 0.10 -1.08 7.69 -2.39 -0.02 -1.09 16 39 H 0.14 -1.02 6.68 -2.91 -0.02 -1.04 16 40 H 0.14 -0.72 8.06 -2.91 -0.02 -0.74 16 41 H 0.13 -0.42 8.06 -2.91 -0.02 -0.45 16 42 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 43 H 0.13 -0.32 8.05 -2.91 -0.02 -0.34 16 44 H 0.10 -0.57 6.34 -2.39 -0.02 -0.58 16 45 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 47 H 0.14 0.07 8.06 -2.91 -0.02 0.05 16 48 H 0.13 0.50 8.06 -2.91 -0.02 0.47 16 49 H 0.12 1.17 8.06 -2.91 -0.02 1.15 16 Total: 0.00 -29.18 409.12 0.96 -28.22 By element: Atomic # 1 Polarization: -18.63 SS G_CDS: -0.43 Total: -19.06 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 4.78 Total: -0.86 kcal Atomic # 7 Polarization: 5.23 SS G_CDS: -3.54 Total: 1.69 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -1.97 Total: -11.09 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: 2.11 Total: 1.10 kcal Total: -29.18 0.96 -28.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.486 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds