Wall clock time and date at job start Sun Mar 7 2021 08:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36773 * 125.79846 * 2 1 4 4 C 1.47262 * 126.94459 * 359.97438 * 3 2 1 5 5 O 1.21626 * 119.99853 * 359.71231 * 4 3 2 6 6 N 1.34774 * 119.99946 * 179.71006 * 4 3 2 7 7 C 1.46501 * 119.99738 * 179.97438 * 6 4 3 8 8 H 1.08998 * 112.84817 * 23.80487 * 7 6 4 9 9 C 1.53779 * 113.61277 * 155.00334 * 7 6 4 10 10 C 1.53777 * 87.08226 * 139.98111 * 9 7 6 11 11 H 1.08997 * 113.61707 * 89.20066 * 10 9 7 12 12 C 1.50706 * 113.61530 * 220.02125 * 10 9 7 13 13 C 1.38237 * 119.99744 * 238.47350 * 12 10 9 14 14 C 1.38235 * 119.99712 * 180.02562 * 13 12 10 15 15 C 1.38234 * 120.00220 * 359.94731 * 14 13 12 16 16 C 1.38233 * 120.00037 * 0.28719 * 15 14 13 17 17 C 1.38234 * 120.00223 * 58.48561 * 12 10 9 18 18 C 1.53783 * 87.17401 * 334.60942 * 10 9 7 19 19 C 1.46686 * 106.11299 * 179.72246 * 3 2 1 20 20 C 1.34488 * 106.33474 * 0.23426 * 19 3 2 21 21 C 1.50699 * 125.57426 * 179.97438 * 20 19 3 22 22 O 1.42900 * 109.47127 * 300.00622 * 21 20 19 23 23 Si 1.86299 * 109.47183 * 180.02562 * 21 20 19 24 24 N 1.34660 * 125.80447 * 180.12756 * 2 1 3 25 25 H 1.09001 * 109.47517 * 90.00280 * 1 2 3 26 26 H 1.09004 * 109.47511 * 210.00355 * 1 2 3 27 27 H 1.08998 * 109.47344 * 330.00398 * 1 2 3 28 28 H 0.97002 * 120.00149 * 0.02562 * 6 4 3 29 29 H 1.09003 * 113.61448 * 25.43061 * 9 7 6 30 30 H 1.09002 * 113.69074 * 254.54133 * 9 7 6 31 31 H 1.08005 * 120.00088 * 359.97438 * 13 12 10 32 32 H 1.07999 * 119.99770 * 179.97438 * 14 13 12 33 33 H 1.08002 * 119.99744 * 180.02562 * 15 14 13 34 34 H 1.07998 * 120.00391 * 179.72199 * 16 15 14 35 35 H 1.07998 * 119.99975 * 0.02562 * 17 12 10 36 36 H 1.08998 * 113.61446 * 139.94208 * 18 10 9 37 37 H 1.09011 * 113.61246 * 270.84197 * 18 10 9 38 38 H 1.08000 * 126.83615 * 180.26525 * 19 3 2 39 39 H 1.08998 * 109.46663 * 60.00632 * 21 20 19 40 40 H 0.96704 * 113.99729 * 179.97438 * 22 21 20 41 41 H 1.48509 * 109.99851 * 60.00218 * 23 21 20 42 42 H 1.48498 * 110.00002 * 181.31976 * 23 21 20 43 43 H 0.97006 * 124.84787 * 0.06539 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5157 -0.0005 5 8 0.6839 2.7839 -0.0063 6 7 2.7849 3.5054 0.0055 7 6 2.3502 4.9045 0.0044 8 1 1.3448 5.0356 0.4044 9 6 3.3837 5.8711 0.6064 10 6 3.0082 6.8492 -0.5192 11 1 2.1833 7.5140 -0.2629 12 6 4.1897 7.5806 -1.1026 13 6 4.2287 8.9622 -1.0769 14 6 5.3121 9.6330 -1.6125 15 6 6.3571 8.9224 -2.1728 16 6 6.3159 7.5410 -2.2028 17 6 5.2343 6.8700 -1.6636 18 6 2.5778 5.6213 -1.3390 19 6 3.6881 0.6152 0.0068 20 6 3.6096 -0.7274 0.0050 21 6 4.7819 -1.6742 0.0098 22 8 5.5815 -1.4481 -1.1528 23 14 4.1615 -3.4308 0.0041 24 7 2.2948 -1.0921 -0.0024 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 3.7310 3.2915 0.0097 29 1 4.4094 5.5074 0.5447 30 1 3.1207 6.2291 1.6018 31 1 3.4122 9.5174 -0.6392 32 1 5.3424 10.7124 -1.5929 33 1 7.2038 9.4466 -2.5909 34 1 7.1302 6.9859 -2.6446 35 1 5.2035 5.7906 -1.6842 36 1 1.6639 5.7774 -1.9121 37 1 3.3829 5.1892 -1.9336 38 1 4.5889 1.2110 0.0127 39 1 5.3830 -1.5037 0.9029 40 1 6.3560 -2.0238 -1.2156 41 1 3.3407 -3.6757 -1.2091 42 1 5.3076 -4.3744 0.0408 43 1 1.9734 -2.0074 -0.0054 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16147626_9865296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:59:04 Heat of formation + Delta-G solvation = 29.029911 kcal Electronic energy + Delta-G solvation = -24970.636432 eV Core-core repulsion = 21369.598500 eV Total energy + Delta-G solvation = -3601.037932 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.47062 -41.28524 -39.95795 -38.55861 -37.85763 -34.69414 -32.88963 -32.32457 -31.79349 -31.36520 -28.99826 -26.68488 -26.49729 -25.18450 -23.68047 -23.38411 -22.04474 -21.36697 -21.01630 -19.96469 -18.69769 -18.24435 -18.02536 -17.12912 -16.92539 -16.39762 -16.28647 -15.89875 -15.81535 -15.42828 -15.12945 -15.02702 -14.69313 -14.54144 -14.25772 -14.14066 -14.07029 -13.89312 -13.66754 -13.44098 -13.42354 -13.07475 -12.92117 -12.56507 -12.47591 -12.28179 -12.13107 -11.76989 -11.64142 -11.41600 -10.88787 -10.55688 -10.09859 -9.81120 -9.79038 -9.53244 -9.13765 -5.07949 0.44176 0.51235 0.69680 1.08937 1.28477 1.46368 1.80503 2.02135 2.42752 2.52224 2.85090 3.40721 3.50182 3.69242 3.73246 3.76591 3.89203 3.95333 4.05098 4.09008 4.16420 4.22392 4.23376 4.30797 4.44625 4.52511 4.58437 4.63550 4.71459 4.72813 4.75609 4.78451 4.84639 4.99589 5.03519 5.04999 5.12360 5.18453 5.22137 5.32960 5.59835 5.62987 5.65441 5.70197 5.76083 5.87088 6.13709 6.39738 6.57303 6.67360 7.35826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.118 3.882 3 C -0.266 4.266 4 C 0.588 3.412 5 O -0.586 6.586 6 N -0.706 5.706 7 C 0.123 3.877 8 H 0.101 0.899 9 C -0.123 4.123 10 C -0.066 4.066 11 H 0.107 0.893 12 C -0.077 4.077 13 C -0.129 4.129 14 C -0.130 4.130 15 C -0.138 4.138 16 C -0.130 4.130 17 C -0.126 4.126 18 C -0.142 4.142 19 C -0.138 4.138 20 C 0.013 3.987 21 C -0.051 4.051 22 O -0.554 6.554 23 Si 0.751 3.249 24 N -0.536 5.536 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.410 0.590 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.157 0.843 39 H 0.112 0.888 40 H 0.399 0.601 41 H -0.294 1.294 42 H -0.275 1.275 43 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 -3.443 3.243 5.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.002 4.002 3 C -0.276 4.276 4 C 0.379 3.621 5 O -0.468 6.468 6 N -0.356 5.356 7 C 0.018 3.982 8 H 0.119 0.881 9 C -0.161 4.161 10 C -0.085 4.085 11 H 0.125 0.875 12 C -0.077 4.077 13 C -0.147 4.147 14 C -0.148 4.148 15 C -0.156 4.156 16 C -0.147 4.147 17 C -0.144 4.144 18 C -0.181 4.181 19 C -0.162 4.162 20 C -0.095 4.095 21 C -0.160 4.160 22 O -0.364 6.364 23 Si 0.654 3.346 24 N -0.136 5.136 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.247 0.753 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.175 0.825 39 H 0.129 0.871 40 H 0.251 0.749 41 H -0.221 1.221 42 H -0.201 1.201 43 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.196 -3.724 2.727 5.112 hybrid contribution 1.425 -0.195 -0.931 1.713 sum 3.621 -3.919 1.796 5.630 Atomic orbital electron populations 1.20619 0.85872 1.04935 1.03875 1.20587 0.94376 0.85479 0.99762 1.20219 0.94102 0.91874 1.21392 1.17619 0.85099 0.84948 0.74469 1.90716 1.18056 1.84982 1.53069 1.45667 1.09909 1.05217 1.74800 1.22492 0.99556 0.79087 0.97111 0.88111 1.23382 0.99523 0.94498 0.98700 1.21310 0.95866 0.94819 0.96488 0.87491 1.19813 0.95678 0.93690 0.98484 1.21331 0.99072 0.94101 1.00231 1.21435 0.94138 1.00859 0.98340 1.21450 0.99341 0.94717 1.00064 1.21425 0.98789 0.94874 0.99657 1.21196 0.93840 1.00505 0.98829 1.23618 1.01986 0.95522 0.96982 1.21945 0.95460 0.93153 1.05633 1.19464 0.83955 0.94652 1.11466 1.24246 0.92345 1.07937 0.91488 1.86557 1.42386 1.63515 1.43961 0.94694 0.82758 0.71884 0.85258 1.41640 1.05129 1.08835 1.58014 0.90202 0.88690 0.89728 0.75306 0.88516 0.89759 0.84977 0.84809 0.84907 0.84800 0.85106 0.91654 0.89138 0.82493 0.87057 0.74935 1.22087 1.20078 0.73340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.14 9.88 71.24 0.70 0.56 16 2 C 0.12 0.46 7.17 41.78 0.30 0.76 16 3 C -0.27 -1.73 6.29 -19.04 -0.12 -1.85 16 4 C 0.59 5.37 7.81 86.62 0.68 6.05 16 5 O -0.59 -9.03 14.41 -4.11 -0.06 -9.09 16 6 N -0.71 -2.15 5.35 -443.17 -2.37 -4.52 16 7 C 0.12 0.27 4.24 45.58 0.19 0.46 16 8 H 0.10 0.59 7.46 -2.39 -0.02 0.58 16 9 C -0.12 0.20 7.30 31.12 0.23 0.43 16 10 C -0.07 0.02 3.98 -11.01 -0.04 -0.03 16 11 H 0.11 -0.14 8.09 -2.39 -0.02 -0.16 16 12 C -0.08 -0.15 5.29 -19.86 -0.11 -0.26 16 13 C -0.13 -0.30 9.71 22.27 0.22 -0.08 16 14 C -0.13 -0.28 10.05 22.27 0.22 -0.06 16 15 C -0.14 -0.29 10.05 22.27 0.22 -0.06 16 16 C -0.13 -0.24 10.05 22.27 0.22 -0.02 16 17 C -0.13 -0.21 8.54 22.27 0.19 -0.02 16 18 C -0.14 -0.22 7.27 31.18 0.23 0.00 16 19 C -0.14 -0.40 10.43 23.62 0.25 -0.15 16 20 C 0.01 0.01 6.14 40.98 0.25 0.26 16 21 C -0.05 0.20 2.97 71.24 0.21 0.41 16 22 O -0.55 0.55 12.84 -148.98 -1.91 -1.37 16 23 Si 0.75 -4.32 30.94 68.60 2.12 -2.20 16 24 N -0.54 0.23 5.41 -171.07 -0.93 -0.69 16 25 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 26 H 0.09 -0.43 8.14 -2.38 -0.02 -0.45 16 27 H 0.08 0.52 6.47 -2.39 -0.02 0.50 16 28 H 0.41 -0.63 7.85 -92.71 -0.73 -1.36 16 29 H 0.10 -0.30 7.62 -2.39 -0.02 -0.32 16 30 H 0.08 -0.20 8.14 -2.39 -0.02 -0.21 16 31 H 0.13 -0.10 8.05 -2.91 -0.02 -0.13 16 32 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 33 H 0.13 -0.17 8.06 -2.91 -0.02 -0.20 16 34 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 35 H 0.13 -0.16 6.73 -2.91 -0.02 -0.18 16 36 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.09 0.10 6.39 -2.38 -0.02 0.09 16 38 H 0.16 -0.12 7.70 -2.91 -0.02 -0.14 16 39 H 0.11 -0.94 7.96 -2.39 -0.02 -0.96 16 40 H 0.40 -3.70 8.74 -74.05 -0.65 -4.35 16 41 H -0.29 -0.46 7.11 99.48 0.71 0.25 16 42 H -0.28 0.40 7.11 99.48 0.71 1.11 16 43 H 0.43 -2.55 6.70 -92.70 -0.62 -3.17 16 Total: 0.00 -20.47 356.84 -0.20 -20.67 By element: Atomic # 1 Polarization: -8.31 SS G_CDS: -0.90 Total: -9.21 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 3.85 Total: 6.41 kcal Atomic # 7 Polarization: -1.92 SS G_CDS: -3.30 Total: -5.21 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -1.97 Total: -10.46 kcal Atomic # 14 Polarization: -4.32 SS G_CDS: 2.12 Total: -2.20 kcal Total: -20.47 -0.20 -20.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16147626_9865296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.700 kcal (2) G-P(sol) polarization free energy of solvation -20.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds