Wall clock time and date at job start Sun Mar 7 2021 07:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45198 * 109.47092 * 2 1 4 4 C 1.34226 * 116.99972 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00243 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00120 * 180.02562 * 4 3 2 7 7 H 1.09002 * 112.85047 * 50.33376 * 6 4 3 8 8 C 1.53781 * 113.61772 * 181.53091 * 6 4 3 9 9 C 1.53777 * 87.08336 * 140.06093 * 8 6 4 10 10 O 1.42898 * 113.61048 * 89.11543 * 9 8 6 11 11 C 1.52998 * 113.61649 * 219.93585 * 9 8 6 12 12 N 1.46495 * 109.47363 * 180.02562 * 11 9 8 13 13 C 1.34777 * 120.00422 * 179.97438 * 12 11 9 14 14 O 1.21689 * 119.99629 * 359.97438 * 13 12 11 15 15 C 1.46677 * 120.00242 * 179.97438 * 13 12 11 16 16 C 1.37870 * 126.23190 * 180.02562 * 15 13 12 17 17 C 1.39838 * 107.08168 * 180.02562 * 16 15 13 18 18 C 1.50708 * 126.06419 * 180.02562 * 17 16 15 19 19 O 1.42897 * 109.47254 * 300.00071 * 18 17 16 20 20 Si 1.86300 * 109.46771 * 179.97438 * 18 17 16 21 21 C 1.35447 * 107.86956 * 359.97438 * 17 16 15 22 22 N 1.35534 * 108.86754 * 359.73103 * 21 17 16 23 23 C 1.53775 * 87.07992 * 334.56762 * 9 8 6 24 24 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46948 * 299.99504 * 1 2 3 26 26 H 1.08998 * 109.47257 * 59.99725 * 1 2 3 27 27 H 1.08997 * 109.46999 * 239.99949 * 2 1 3 28 28 H 1.09000 * 109.47000 * 119.99798 * 2 1 3 29 29 H 1.08997 * 113.61673 * 254.61641 * 8 6 4 30 30 H 1.09009 * 113.61202 * 25.42872 * 8 6 4 31 31 H 0.96702 * 114.00290 * 179.97438 * 10 9 8 32 32 H 1.09004 * 109.46784 * 300.00166 * 11 9 8 33 33 H 1.09000 * 109.47349 * 60.00231 * 11 9 8 34 34 H 0.97001 * 120.00011 * 359.97438 * 12 11 9 35 35 H 1.08001 * 126.45798 * 0.02918 * 16 15 13 36 36 H 1.08995 * 109.46824 * 60.00341 * 18 17 16 37 37 H 0.96701 * 113.99953 * 300.00198 * 19 18 17 38 38 H 1.48499 * 109.99660 * 179.97438 * 20 18 17 39 39 H 1.48499 * 110.00127 * 301.32048 * 20 18 17 40 40 H 1.08002 * 125.56649 * 180.02562 * 21 17 16 41 41 H 0.97005 * 125.67810 * 180.30478 * 22 21 17 42 42 H 1.08993 * 113.61636 * 270.87622 * 23 9 8 43 43 H 1.09008 * 113.61006 * 139.97865 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 1 3.4898 3.5734 0.7744 8 6 5.4578 2.9683 -0.0359 9 6 5.3322 4.1543 -1.0067 10 8 5.2731 5.4242 -0.3541 11 6 6.3482 4.1206 -2.1502 12 7 6.1488 5.2861 -3.0151 13 6 6.9356 5.4669 -4.0943 14 8 7.8119 4.6623 -4.3500 15 6 6.7355 6.6336 -4.9606 16 6 7.4613 6.9430 -6.0912 17 6 6.9363 8.1337 -6.6032 18 6 7.4143 8.8562 -7.8364 19 8 8.7862 9.2212 -7.6729 20 14 6.3892 10.3903 -8.0938 21 6 5.9212 8.5219 -5.7948 22 7 5.7849 7.6154 -4.7964 23 6 3.9525 3.5935 -1.3893 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.9124 3.2319 0.9190 30 1 5.9017 2.0798 -0.4851 31 1 5.1945 6.1743 -0.9595 32 1 7.3578 4.1416 -1.7399 33 1 6.2110 3.2088 -2.7314 34 1 5.4504 5.9277 -2.8111 35 1 8.2808 6.3732 -6.5037 36 1 7.3130 8.2024 -8.7026 37 1 8.9510 9.8038 -6.9190 38 1 6.8511 11.1122 -9.3066 39 1 4.9564 10.0263 -8.2336 40 1 5.3159 9.4065 -5.9271 41 1 5.1283 7.6536 -4.0834 42 1 3.9847 2.8767 -2.2098 43 1 3.1917 4.3620 -1.5269 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_10543058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:01:30 Heat of formation + Delta-G solvation = -129.955892 kcal Electronic energy + Delta-G solvation = -27116.594261 eV Core-core repulsion = 22937.294032 eV Total energy + Delta-G solvation = -4179.300228 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.52315 -42.11326 -40.83331 -39.87720 -37.80014 -37.63031 -36.11213 -35.47677 -32.72705 -32.58233 -31.09640 -29.54693 -27.09142 -26.78485 -26.01161 -24.12586 -23.51633 -21.98959 -21.35936 -20.85903 -20.77390 -20.25048 -18.89689 -18.06325 -17.80918 -17.41017 -17.32900 -17.30880 -16.75820 -16.49054 -16.17635 -15.98396 -15.57076 -15.31860 -15.01160 -14.87286 -14.76597 -14.39453 -14.32899 -14.16073 -13.92281 -13.82852 -13.55658 -13.45688 -13.30218 -13.00189 -12.81503 -12.59450 -12.31683 -12.25486 -11.95989 -11.81603 -11.60687 -11.55385 -11.33929 -10.97206 -10.44481 -10.35623 -9.92328 -9.28654 -4.90885 0.33495 1.01898 1.41508 1.54456 1.57092 1.73950 1.82034 2.10234 2.12072 2.22258 2.80368 3.06672 3.31725 3.39029 3.43285 3.68746 3.77991 3.87079 3.93144 3.98608 4.00638 4.17487 4.19058 4.27903 4.28403 4.39060 4.55132 4.59586 4.64539 4.67269 4.76967 4.82146 4.85914 4.87528 4.89814 5.01033 5.07162 5.09748 5.10858 5.39024 5.57354 5.71508 6.23859 6.51358 6.57971 6.60833 6.91827 6.97287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.540 6.540 6 C -0.100 4.100 7 H 0.147 0.853 8 C -0.109 4.109 9 C 0.116 3.884 10 O -0.535 6.535 11 C 0.107 3.893 12 N -0.711 5.711 13 C 0.591 3.409 14 O -0.574 6.574 15 C -0.069 4.069 16 C -0.104 4.104 17 C -0.229 4.229 18 C -0.054 4.054 19 O -0.567 6.567 20 Si 0.802 3.198 21 C 0.064 3.936 22 N -0.512 5.512 23 C -0.136 4.136 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.392 0.608 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.411 0.589 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.393 0.607 38 H -0.313 1.313 39 H -0.270 1.270 40 H 0.217 0.783 41 H 0.439 0.561 42 H 0.093 0.907 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.639 7.447 3.741 12.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.313 3.687 5 O -0.429 6.429 6 C -0.119 4.119 7 H 0.165 0.835 8 C -0.147 4.147 9 C 0.074 3.926 10 O -0.343 6.343 11 C -0.017 4.017 12 N -0.365 5.365 13 C 0.380 3.620 14 O -0.453 6.453 15 C -0.182 4.182 16 C -0.131 4.131 17 C -0.235 4.235 18 C -0.163 4.163 19 O -0.375 6.375 20 Si 0.707 3.293 21 C -0.075 4.075 22 N -0.110 5.110 23 C -0.173 4.173 24 H 0.114 0.886 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.243 0.757 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.248 0.752 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.243 0.757 38 H -0.241 1.241 39 H -0.196 1.196 40 H 0.233 0.767 41 H 0.281 0.719 42 H 0.112 0.888 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.385 6.165 3.251 10.903 hybrid contribution 0.023 -0.855 -0.426 0.956 sum -8.362 5.310 2.825 10.301 Atomic orbital electron populations 1.21825 0.90595 1.04269 1.03798 1.23260 0.97005 0.79407 1.02425 1.86522 1.24251 1.33411 1.83384 1.24109 0.80551 0.93030 0.70985 1.90678 1.61186 1.44288 1.46795 1.22533 0.96847 0.89563 1.02961 0.83547 1.23078 0.93527 0.96810 1.01285 1.22066 0.93467 0.85606 0.91414 1.86611 1.96131 1.14626 1.36939 1.21900 1.00056 0.89077 0.90670 1.45487 1.36718 1.27609 1.26732 1.17224 0.80863 0.83810 0.80089 1.90876 1.35098 1.46163 1.73171 1.19989 1.00311 0.95477 1.02420 1.21217 0.99846 0.97226 0.94853 1.19956 1.02515 0.99225 1.01831 1.24757 0.88943 1.06940 0.95674 1.86456 1.24972 1.71502 1.54533 0.93902 0.74738 0.76422 0.84213 1.22384 0.99754 0.96336 0.88977 1.41811 1.26921 1.18140 1.24128 1.23666 0.98351 1.01064 0.94252 0.88627 0.91187 0.91142 0.91474 0.91509 0.88768 0.87910 0.75699 0.91029 0.90516 0.75190 0.86113 0.89256 0.75688 1.24118 1.19633 0.76655 0.71950 0.88805 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.60 10.29 71.98 0.74 1.34 16 2 C 0.05 0.04 6.19 71.98 0.45 0.49 16 3 O -0.36 -1.04 10.22 -51.38 -0.53 -1.56 16 4 C 0.47 1.77 7.49 71.24 0.53 2.31 16 5 O -0.54 -5.65 15.66 21.95 0.34 -5.31 16 6 C -0.10 0.30 4.19 -11.01 -0.05 0.26 16 7 H 0.15 -0.84 8.14 -2.39 -0.02 -0.86 16 8 C -0.11 0.23 6.78 31.12 0.21 0.45 16 9 C 0.12 -0.73 1.49 -10.27 -0.02 -0.74 16 10 O -0.54 4.20 13.41 -148.98 -2.00 2.21 16 11 C 0.11 -0.30 5.33 86.38 0.46 0.16 16 12 N -0.71 3.96 5.33 -467.09 -2.49 1.47 16 13 C 0.59 2.13 7.79 86.45 0.67 2.80 16 14 O -0.57 -8.30 16.88 -4.31 -0.07 -8.37 16 15 C -0.07 -0.02 7.06 40.35 0.28 0.26 16 16 C -0.10 -0.52 10.59 22.57 0.24 -0.29 16 17 C -0.23 0.23 5.44 -20.12 -0.11 0.12 16 18 C -0.05 0.01 3.02 71.24 0.22 0.23 16 19 O -0.57 -1.32 12.88 -148.98 -1.92 -3.24 16 20 Si 0.80 -4.50 30.59 68.60 2.10 -2.41 16 21 C 0.06 -0.55 10.45 83.48 0.87 0.32 16 22 N -0.51 4.93 5.99 -183.63 -1.10 3.83 16 23 C -0.14 0.98 7.02 31.12 0.22 1.20 16 24 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 25 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 28 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 29 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.10 0.06 7.41 -2.38 -0.02 0.04 16 31 H 0.39 -6.29 7.30 -74.06 -0.54 -6.83 16 32 H 0.07 0.06 8.14 -2.38 -0.02 0.04 16 33 H 0.08 -0.01 7.95 -2.39 -0.02 -0.03 16 34 H 0.41 -5.93 6.16 -92.71 -0.57 -6.50 16 35 H 0.12 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.09 0.27 7.96 -2.39 -0.02 0.25 16 37 H 0.39 -2.55 8.70 -74.06 -0.64 -3.19 16 38 H -0.31 -1.24 7.11 99.48 0.71 -0.53 16 39 H -0.27 0.91 7.11 99.48 0.71 1.61 16 40 H 0.22 -3.63 6.19 -2.91 -0.02 -3.65 16 41 H 0.44 -8.08 8.19 -92.70 -0.76 -8.84 16 42 H 0.09 -0.52 7.92 -2.39 -0.02 -0.54 16 43 H 0.11 -1.34 8.14 -2.38 -0.02 -1.36 16 Total: 0.00 -32.69 367.39 -2.33 -35.02 By element: Atomic # 1 Polarization: -29.14 SS G_CDS: -1.39 Total: -30.53 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 4.72 Total: 8.90 kcal Atomic # 7 Polarization: 8.89 SS G_CDS: -3.59 Total: 5.30 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -4.17 Total: -16.28 kcal Atomic # 14 Polarization: -4.50 SS G_CDS: 2.10 Total: -2.41 kcal Total: -32.69 -2.33 -35.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_10543058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.933 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds