Wall clock time and date at job start Sun Mar 7 2021 07:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.46947 * 2 1 4 4 C 1.34232 * 116.99383 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00561 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99505 * 180.02562 * 4 3 2 7 7 H 1.08997 * 112.85256 * 48.80376 * 6 4 3 8 8 C 1.53782 * 113.61339 * 180.02562 * 6 4 3 9 9 C 1.53783 * 87.08086 * 140.06651 * 8 6 4 10 10 O 1.42894 * 113.61608 * 89.20057 * 9 8 6 11 11 C 1.53005 * 113.61057 * 220.01857 * 9 8 6 12 12 N 1.46501 * 109.46954 * 180.02562 * 11 9 8 13 13 C 1.34773 * 119.99976 * 179.97438 * 12 11 9 14 14 O 1.21693 * 119.99855 * 5.12287 * 13 12 11 15 15 C 1.46680 * 119.99781 * 185.11979 * 13 12 11 16 16 C 1.37873 * 126.23632 * 354.28674 * 15 13 12 17 17 C 1.39830 * 107.08767 * 179.97438 * 16 15 13 18 18 C 1.50699 * 126.07164 * 180.02562 * 17 16 15 19 19 O 1.42897 * 109.47027 * 245.02241 * 18 17 16 20 20 Si 1.86301 * 109.46578 * 5.01904 * 18 17 16 21 21 C 1.35459 * 107.86488 * 0.25965 * 17 16 15 22 22 N 1.35540 * 108.86952 * 359.57434 * 21 17 16 23 23 C 1.46498 * 125.67548 * 180.16865 * 22 21 17 24 24 C 1.53776 * 87.08153 * 334.56695 * 9 8 6 25 25 H 1.09001 * 109.47307 * 299.99954 * 1 2 3 26 26 H 1.08997 * 109.46948 * 60.00200 * 1 2 3 27 27 H 1.08997 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47167 * 239.99626 * 2 1 3 29 29 H 1.09006 * 109.46639 * 120.00320 * 2 1 3 30 30 H 1.09003 * 113.61531 * 25.51351 * 8 6 4 31 31 H 1.09008 * 113.68889 * 254.62628 * 8 6 4 32 32 H 0.96700 * 114.00164 * 181.52985 * 10 9 8 33 33 H 1.08998 * 109.47241 * 59.99929 * 11 9 8 34 34 H 1.09000 * 109.46979 * 299.99642 * 11 9 8 35 35 H 0.97000 * 119.99895 * 359.97438 * 12 11 9 36 36 H 1.07994 * 126.45331 * 359.94437 * 16 15 13 37 37 H 1.08998 * 109.47338 * 125.02159 * 18 17 16 38 38 H 0.96708 * 114.00205 * 59.99546 * 19 18 17 39 39 H 1.48494 * 109.99965 * 58.68776 * 20 18 17 40 40 H 1.48505 * 109.99650 * 180.02562 * 20 18 17 41 41 H 1.08003 * 125.56468 * 179.73560 * 21 17 16 42 42 H 1.09000 * 109.47476 * 274.22060 * 23 22 21 43 43 H 1.09000 * 109.47245 * 34.22195 * 23 22 21 44 44 H 1.09001 * 109.46787 * 154.22287 * 23 22 21 45 45 H 1.08997 * 113.61729 * 139.98581 * 24 9 8 46 46 H 1.09005 * 113.61382 * 270.88673 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.4709 3.5811 0.7570 8 6 5.4583 2.9680 0.0011 9 6 5.3564 4.1443 -0.9842 10 8 5.2836 5.4208 -0.3462 11 6 6.3986 4.0981 -2.1035 12 7 6.2205 5.2550 -2.9845 13 6 7.0323 5.4242 -4.0469 14 8 7.8517 4.5698 -4.3288 15 6 6.9280 6.6383 -4.8635 16 6 5.9806 7.6310 -4.7305 17 6 6.2540 8.5933 -5.7075 18 6 5.4789 9.8642 -5.9426 19 8 4.8566 9.8117 -7.2278 20 14 4.1725 10.0469 -4.6270 21 6 7.3360 8.1780 -6.4086 22 7 7.7587 6.9941 -5.9019 23 6 8.9050 6.2192 -6.3832 24 6 3.9862 3.5796 -1.3946 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 5.9128 2.0757 -0.4295 31 1 5.8909 3.2409 0.9637 32 1 5.1959 6.1629 -0.9599 33 1 6.2739 3.1805 -2.6784 34 1 7.3984 4.1224 -1.6702 35 1 5.5183 5.8992 -2.8032 36 1 5.1783 7.6598 -4.0082 37 1 6.1573 10.7163 -5.9019 38 1 4.2381 9.0761 -7.3357 39 1 4.8044 10.0708 -3.2835 40 1 3.4006 11.2962 -4.8479 41 1 7.7896 8.7055 -7.2347 42 1 8.5912 5.5812 -7.2095 43 1 9.6853 6.8990 -6.7252 44 1 9.2913 5.6007 -5.5731 45 1 3.2292 4.3464 -1.5584 46 1 4.0383 2.8545 -2.2069 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_10803934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:01:34 Heat of formation + Delta-G solvation = -122.123039 kcal Electronic energy + Delta-G solvation = -29537.039397 eV Core-core repulsion = 25202.541208 eV Total energy + Delta-G solvation = -4334.498189 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.57698 -42.07334 -40.77516 -39.79814 -37.75719 -37.63827 -36.05611 -35.46074 -33.91292 -32.66489 -31.30607 -29.28799 -28.41173 -26.97601 -26.35294 -25.59708 -23.95976 -23.31488 -21.92571 -21.17523 -20.82063 -20.73995 -19.37664 -18.76957 -17.76216 -17.70512 -17.39644 -17.34501 -17.15172 -16.89048 -16.48882 -16.09494 -15.96359 -15.64237 -15.28048 -15.19614 -15.02611 -14.82073 -14.59051 -14.34435 -14.15822 -13.98433 -13.78419 -13.67229 -13.49744 -13.27460 -13.20610 -13.09812 -12.95721 -12.73268 -12.54908 -12.25564 -12.15015 -11.94437 -11.71487 -11.55968 -11.44529 -11.14208 -10.89409 -10.34406 -10.30050 -9.73299 -9.24390 -4.87170 0.38621 1.06867 1.47831 1.49207 1.56976 1.65983 1.81639 2.10282 2.24283 2.26266 2.87442 3.13868 3.38053 3.45944 3.49589 3.65893 3.70304 3.92125 3.92700 3.97316 4.04809 4.05927 4.21336 4.24547 4.31731 4.32352 4.35275 4.41524 4.61814 4.64485 4.66621 4.68879 4.70989 4.74257 4.82217 4.90038 4.90456 4.93035 5.12540 5.13744 5.15692 5.19940 5.43650 5.67184 5.92436 6.14020 6.34668 6.65236 6.66076 6.92091 7.05158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.470 3.530 5 O -0.540 6.540 6 C -0.101 4.101 7 H 0.145 0.855 8 C -0.108 4.108 9 C 0.114 3.886 10 O -0.538 6.538 11 C 0.111 3.889 12 N -0.703 5.703 13 C 0.590 3.410 14 O -0.582 6.582 15 C -0.075 4.075 16 C -0.121 4.121 17 C -0.217 4.217 18 C -0.043 4.043 19 O -0.563 6.563 20 Si 0.787 3.213 21 C 0.045 3.955 22 N -0.416 5.416 23 C 0.063 3.937 24 C -0.135 4.135 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.393 0.607 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.415 0.585 36 H 0.180 0.820 37 H 0.100 0.900 38 H 0.393 0.607 39 H -0.276 1.276 40 H -0.310 1.310 41 H 0.183 0.817 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.007 1.429 -0.496 5.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.314 3.686 5 O -0.430 6.430 6 C -0.120 4.120 7 H 0.163 0.837 8 C -0.146 4.146 9 C 0.072 3.928 10 O -0.346 6.346 11 C -0.013 4.013 12 N -0.357 5.357 13 C 0.379 3.621 14 O -0.464 6.464 15 C -0.188 4.188 16 C -0.147 4.147 17 C -0.223 4.223 18 C -0.154 4.154 19 O -0.371 6.371 20 Si 0.693 3.307 21 C -0.092 4.092 22 N -0.088 5.088 23 C -0.078 4.078 24 C -0.173 4.173 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.245 0.755 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.254 0.746 36 H 0.197 0.803 37 H 0.117 0.883 38 H 0.243 0.757 39 H -0.203 1.203 40 H -0.239 1.239 41 H 0.200 0.800 42 H 0.100 0.900 43 H 0.122 0.878 44 H 0.105 0.895 45 H 0.135 0.865 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.813 0.897 0.329 3.931 hybrid contribution 0.674 0.306 -0.696 1.016 sum -3.139 1.203 -0.367 3.382 Atomic orbital electron populations 1.21823 0.90650 1.04219 1.03817 1.23251 0.96971 0.79445 1.02405 1.86530 1.24265 1.33358 1.83376 1.24099 0.80532 0.93006 0.70939 1.90670 1.61182 1.44281 1.46860 1.22536 0.96823 0.89619 1.03042 0.83723 1.23072 0.93465 0.96929 1.01148 1.22089 0.93546 0.85406 0.91716 1.86590 1.96005 1.14833 1.37219 1.21888 0.99797 0.89275 0.90352 1.45303 1.35470 1.28004 1.26935 1.17127 0.80422 0.84384 0.80122 1.90808 1.38871 1.45209 1.71477 1.19993 1.00044 0.99756 0.98970 1.21503 0.99616 0.92570 1.01015 1.19887 1.00885 0.99970 1.01539 1.24566 1.01374 0.95163 0.94256 1.86447 1.62532 1.55022 1.33088 0.93795 0.79262 0.83642 0.74026 1.22266 0.98139 0.87502 1.01317 1.44089 1.23049 1.17444 1.24250 1.22371 0.86706 0.96932 1.01796 1.23679 0.98335 1.01200 0.94065 0.91258 0.91063 0.88689 0.91396 0.91600 0.87805 0.88958 0.75534 0.90245 0.91172 0.74603 0.80312 0.88296 0.75705 1.20269 1.23886 0.79956 0.89959 0.87773 0.89508 0.86512 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.61 10.29 71.98 0.74 1.35 16 2 C 0.05 0.03 6.19 71.98 0.45 0.48 16 3 O -0.36 -1.00 10.22 -51.44 -0.53 -1.53 16 4 C 0.47 1.71 7.49 71.24 0.53 2.24 16 5 O -0.54 -5.48 15.65 21.98 0.34 -5.13 16 6 C -0.10 0.29 4.19 -11.01 -0.05 0.25 16 7 H 0.15 -0.76 8.14 -2.39 -0.02 -0.78 16 8 C -0.11 0.23 6.79 31.12 0.21 0.44 16 9 C 0.11 -0.67 1.48 -10.27 -0.02 -0.69 16 10 O -0.54 3.49 13.40 -148.98 -2.00 1.49 16 11 C 0.11 -0.35 5.33 86.38 0.46 0.11 16 12 N -0.70 3.37 5.33 -467.07 -2.49 0.88 16 13 C 0.59 1.62 7.77 86.45 0.67 2.29 16 14 O -0.58 -6.12 14.67 -4.33 -0.06 -6.19 16 15 C -0.07 -0.07 6.88 40.35 0.28 0.21 16 16 C -0.12 0.49 8.84 22.57 0.20 0.69 16 17 C -0.22 0.43 5.40 -20.12 -0.11 0.33 16 18 C -0.04 0.11 3.00 71.24 0.21 0.32 16 19 O -0.56 0.68 12.88 -148.98 -1.92 -1.24 16 20 Si 0.79 -4.07 30.65 68.60 2.10 -1.97 16 21 C 0.04 -0.03 11.29 83.48 0.94 0.91 16 22 N -0.42 -0.54 3.16 -534.30 -1.69 -2.23 16 23 C 0.06 -0.04 10.64 127.77 1.36 1.32 16 24 C -0.14 0.97 7.02 31.12 0.22 1.18 16 25 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 28 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 29 H 0.07 0.10 8.13 -2.38 -0.02 0.08 16 30 H 0.10 0.02 7.40 -2.39 -0.02 0.00 16 31 H 0.09 -0.16 8.14 -2.38 -0.02 -0.18 16 32 H 0.39 -5.44 7.33 -74.06 -0.54 -5.98 16 33 H 0.08 -0.09 7.94 -2.39 -0.02 -0.10 16 34 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.42 -5.00 5.94 -92.71 -0.55 -5.55 16 36 H 0.18 -2.13 5.79 -2.91 -0.02 -2.15 16 37 H 0.10 -0.09 7.96 -2.39 -0.02 -0.11 16 38 H 0.39 -3.51 8.70 -74.05 -0.64 -4.16 16 39 H -0.28 0.47 7.11 99.48 0.71 1.18 16 40 H -0.31 -1.13 7.11 99.48 0.71 -0.42 16 41 H 0.18 -0.70 8.06 -2.91 -0.02 -0.73 16 42 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.09 0.30 6.23 -2.39 -0.01 0.29 16 45 H 0.12 -1.34 8.14 -2.39 -0.02 -1.36 16 46 H 0.10 -0.57 7.92 -2.38 -0.02 -0.59 16 Total: 0.00 -26.20 385.59 -0.80 -27.00 By element: Atomic # 1 Polarization: -21.86 SS G_CDS: -0.67 Total: -22.53 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 6.10 Total: 11.45 kcal Atomic # 7 Polarization: 2.83 SS G_CDS: -4.18 Total: -1.35 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -4.16 Total: -12.60 kcal Atomic # 14 Polarization: -4.07 SS G_CDS: 2.10 Total: -1.97 kcal Total: -26.20 -0.80 -27.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_10803934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.120 kcal (2) G-P(sol) polarization free energy of solvation -26.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds