Wall clock time and date at job start Sun Mar 7 2021 07:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45199 * 109.47331 * 2 1 4 4 C 1.34227 * 117.00337 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99560 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00204 * 180.27492 * 4 3 2 7 7 H 1.09007 * 112.84502 * 310.91601 * 6 4 3 8 8 C 1.53780 * 113.61508 * 82.22038 * 6 4 3 9 9 C 1.53780 * 87.07997 * 139.98397 * 8 6 4 10 10 O 1.42903 * 113.61540 * 89.11524 * 9 8 6 11 11 C 1.53000 * 113.61345 * 220.01871 * 9 8 6 12 12 N 1.46495 * 109.47054 * 282.49248 * 11 9 8 13 13 C 1.34776 * 119.99724 * 179.97438 * 12 11 9 14 14 O 1.21696 * 120.00360 * 354.94466 * 13 12 11 15 15 C 1.46687 * 119.99916 * 174.94153 * 13 12 11 16 16 C 1.37868 * 126.23160 * 4.96296 * 15 13 12 17 17 C 1.39836 * 107.08462 * 179.97438 * 16 15 13 18 18 C 1.35453 * 107.86238 * 0.02562 * 17 16 15 19 19 C 1.50703 * 125.55995 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.46818 * 149.97163 * 19 18 17 21 21 Si 1.86303 * 109.47290 * 29.97302 * 19 18 17 22 22 N 1.35528 * 108.87178 * 359.73054 * 18 17 16 23 23 C 1.46502 * 125.67582 * 180.30701 * 22 18 17 24 24 C 1.53780 * 87.08301 * 334.56681 * 9 8 6 25 25 H 1.08995 * 109.47552 * 300.00431 * 1 2 3 26 26 H 1.08999 * 109.47060 * 60.00376 * 1 2 3 27 27 H 1.09006 * 109.47100 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47552 * 239.99569 * 2 1 3 29 29 H 1.09007 * 109.46900 * 119.99355 * 2 1 3 30 30 H 1.09000 * 113.61453 * 254.52947 * 8 6 4 31 31 H 1.08996 * 113.61654 * 25.43405 * 8 6 4 32 32 H 0.96694 * 114.00208 * 82.50397 * 10 9 8 33 33 H 1.08999 * 109.47224 * 42.50034 * 11 9 8 34 34 H 1.09007 * 109.46932 * 162.49639 * 11 9 8 35 35 H 0.96994 * 120.00409 * 0.02562 * 12 11 9 36 36 H 1.08005 * 126.45893 * 359.96075 * 16 15 13 37 37 H 1.07996 * 126.06490 * 179.97438 * 17 16 15 38 38 H 1.09001 * 109.47295 * 269.97260 * 19 18 17 39 39 H 0.96698 * 114.00041 * 299.99926 * 20 19 18 40 40 H 1.48504 * 109.99829 * 58.68044 * 21 19 18 41 41 H 1.48494 * 110.00099 * 179.97438 * 21 19 18 42 42 H 1.09002 * 109.46982 * 275.95433 * 23 22 18 43 43 H 1.08994 * 109.47598 * 35.95507 * 23 22 18 44 44 H 1.09003 * 109.47061 * 155.95698 * 23 22 18 45 45 H 1.09000 * 113.61712 * 270.88816 * 24 9 8 46 46 H 1.09002 * 113.69819 * 139.99047 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.4737 3.5836 -0.7498 8 6 3.9814 3.5727 1.4048 9 6 5.3530 4.1394 1.0019 10 8 5.2804 5.4190 0.3698 11 6 6.3913 4.0878 2.1245 12 7 6.1355 5.1715 3.0764 13 6 6.9297 5.3226 4.1547 14 8 7.8015 4.5061 4.3877 15 6 6.7434 6.4715 5.0476 16 6 5.7428 7.4160 4.9622 17 6 5.9447 8.3239 6.0064 18 6 7.0412 7.9272 6.6958 19 6 7.6164 8.6222 7.9029 20 8 8.2517 7.6609 8.7482 21 14 6.2485 9.4682 8.8431 22 7 7.5325 6.7996 6.1266 23 6 8.7092 6.0553 6.5825 24 6 5.4583 2.9681 0.0111 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.2238 4.3388 1.5697 31 1 4.0307 2.8437 2.2136 32 1 5.2141 6.1598 0.9877 33 1 6.3233 3.1290 2.6384 34 1 7.3894 4.2035 1.7018 35 1 5.3941 5.7799 2.9311 36 1 4.9521 7.4488 4.2272 37 1 5.3352 9.1884 6.2240 38 1 8.3484 9.3631 7.5812 39 1 7.6585 6.9696 9.0727 40 1 5.2279 8.4732 9.2599 41 1 6.8028 10.1568 10.0362 42 1 9.6091 6.5074 6.1655 43 1 8.7586 6.0849 7.6709 44 1 8.6353 5.0198 6.2502 45 1 5.9113 2.0737 0.4389 46 1 5.8928 3.2445 -0.9496 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_10803936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:01:39 Heat of formation + Delta-G solvation = -120.708659 kcal Electronic energy + Delta-G solvation = -29521.143947 eV Core-core repulsion = 25186.707090 eV Total energy + Delta-G solvation = -4334.436857 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62454 -42.10859 -40.81489 -39.85134 -37.95329 -37.77132 -36.04795 -35.50573 -33.76557 -32.69138 -31.71651 -29.65289 -27.55273 -27.16834 -26.88755 -25.75613 -23.82419 -23.12467 -21.97141 -21.46881 -20.78529 -20.68849 -19.25914 -18.78280 -18.38265 -17.79001 -17.49053 -17.36883 -17.18702 -16.98657 -16.44982 -16.11943 -16.04425 -15.67636 -15.36402 -15.17005 -14.91395 -14.83161 -14.52441 -14.40330 -14.25447 -14.17598 -13.81107 -13.79236 -13.51711 -13.29307 -13.19213 -12.98392 -12.93912 -12.78236 -12.57319 -12.36753 -12.27486 -11.94361 -11.75943 -11.58792 -11.49004 -11.26279 -10.92348 -10.82655 -10.35689 -9.73460 -9.10001 -4.86542 0.34121 1.03719 1.18422 1.48368 1.61814 1.74039 1.77150 2.01101 2.27589 2.30364 2.85724 3.10870 3.14580 3.35539 3.43110 3.46667 3.57688 3.72206 3.89617 3.94668 3.97889 4.02282 4.20445 4.27668 4.29647 4.30428 4.35945 4.49352 4.56060 4.57837 4.61941 4.67922 4.69175 4.79674 4.86718 4.87617 4.90316 5.09990 5.11364 5.12759 5.18003 5.20320 5.40798 5.71725 6.00239 6.12752 6.27866 6.37257 6.62683 6.64893 7.04355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.540 6.540 6 C -0.100 4.100 7 H 0.146 0.854 8 C -0.136 4.136 9 C 0.117 3.883 10 O -0.537 6.537 11 C 0.111 3.889 12 N -0.701 5.701 13 C 0.588 3.412 14 O -0.587 6.587 15 C -0.087 4.087 16 C -0.121 4.121 17 C -0.200 4.200 18 C 0.006 3.994 19 C -0.069 4.069 20 O -0.548 6.548 21 Si 0.820 3.180 22 N -0.408 5.408 23 C 0.055 3.945 24 C -0.108 4.108 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.395 0.605 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.417 0.583 36 H 0.182 0.818 37 H 0.186 0.814 38 H 0.131 0.869 39 H 0.386 0.614 40 H -0.290 1.290 41 H -0.300 1.300 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.952 5.977 -0.352 9.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.314 3.686 5 O -0.430 6.430 6 C -0.119 4.119 7 H 0.164 0.836 8 C -0.173 4.173 9 C 0.075 3.925 10 O -0.345 6.345 11 C -0.013 4.013 12 N -0.355 5.355 13 C 0.377 3.623 14 O -0.470 6.470 15 C -0.200 4.200 16 C -0.147 4.147 17 C -0.224 4.224 18 C -0.112 4.112 19 C -0.176 4.176 20 O -0.356 6.356 21 Si 0.722 3.278 22 N -0.081 5.081 23 C -0.085 4.085 24 C -0.146 4.146 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.246 0.754 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.256 0.744 36 H 0.199 0.801 37 H 0.203 0.797 38 H 0.148 0.852 39 H 0.236 0.764 40 H -0.217 1.217 41 H -0.227 1.227 42 H 0.086 0.914 43 H 0.128 0.872 44 H 0.104 0.896 45 H 0.121 0.879 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.698 4.910 -0.042 7.522 hybrid contribution 0.512 -1.336 0.692 1.589 sum -5.186 3.574 0.650 6.332 Atomic orbital electron populations 1.21824 0.90598 1.04256 1.03815 1.23258 0.97010 0.79419 1.02405 1.86526 1.24254 1.33402 1.83371 1.24108 0.80543 0.93019 0.70941 1.90673 1.61194 1.44273 1.46862 1.22538 0.96846 0.89637 1.02888 0.83587 1.23650 0.98443 1.01180 0.94061 1.22047 0.93355 0.85452 0.91660 1.86578 1.96169 1.14619 1.37179 1.21866 0.99503 0.90992 0.88968 1.45268 1.33038 1.33551 1.23636 1.17234 0.80823 0.83564 0.80631 1.90786 1.36194 1.45830 1.74150 1.20163 1.00675 1.02377 0.96776 1.21771 0.98371 0.93566 1.00977 1.21039 0.98919 1.03804 0.98601 1.21478 0.98685 0.90939 1.00097 1.25296 1.08130 0.94495 0.89704 1.86566 1.40278 1.41695 1.67081 0.93307 0.73693 0.81812 0.78966 1.43907 1.22176 1.20628 1.21434 1.22506 0.85568 0.97413 1.03053 1.23070 0.93466 0.96949 1.01145 0.91132 0.91189 0.88626 0.91521 0.91478 0.86655 0.88862 0.75406 0.90679 0.91161 0.74430 0.80058 0.79695 0.85160 0.76433 1.21674 1.22741 0.91375 0.87166 0.89593 0.87935 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.53 10.29 71.98 0.74 1.28 16 2 C 0.05 0.07 6.19 71.98 0.45 0.51 16 3 O -0.36 -1.26 10.22 -51.39 -0.53 -1.79 16 4 C 0.47 2.08 7.48 71.24 0.53 2.61 16 5 O -0.54 -5.91 15.65 21.95 0.34 -5.57 16 6 C -0.10 0.21 4.19 -11.01 -0.05 0.16 16 7 H 0.15 -0.68 8.14 -2.38 -0.02 -0.70 16 8 C -0.14 0.81 7.01 31.12 0.22 1.03 16 9 C 0.12 -0.58 1.42 -10.27 -0.01 -0.59 16 10 O -0.54 3.19 13.41 -148.98 -2.00 1.19 16 11 C 0.11 -0.19 5.26 86.38 0.45 0.26 16 12 N -0.70 2.46 5.30 -467.07 -2.48 -0.02 16 13 C 0.59 2.80 7.77 86.45 0.67 3.47 16 14 O -0.59 -7.71 14.55 -4.34 -0.06 -7.78 16 15 C -0.09 -0.23 6.89 40.35 0.28 0.05 16 16 C -0.12 0.49 10.35 22.57 0.23 0.72 16 17 C -0.20 0.87 9.37 22.01 0.21 1.08 16 18 C 0.01 0.00 6.15 41.35 0.25 0.25 16 19 C -0.07 0.19 2.99 71.24 0.21 0.40 16 20 O -0.55 -0.02 10.11 -148.98 -1.51 -1.53 16 21 Si 0.82 -4.33 31.10 68.60 2.13 -2.19 16 22 N -0.41 -1.55 3.16 -519.70 -1.64 -3.19 16 23 C 0.06 0.24 10.30 127.77 1.32 1.55 16 24 C -0.11 0.14 6.80 31.12 0.21 0.35 16 25 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.10 -0.61 8.14 -2.38 -0.02 -0.63 16 28 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 29 H 0.07 0.12 8.14 -2.38 -0.02 0.10 16 30 H 0.12 -1.18 8.14 -2.39 -0.02 -1.20 16 31 H 0.09 -0.41 7.99 -2.39 -0.02 -0.43 16 32 H 0.39 -5.22 7.60 -74.06 -0.56 -5.79 16 33 H 0.07 0.07 8.05 -2.39 -0.02 0.05 16 34 H 0.07 0.10 8.14 -2.38 -0.02 0.08 16 35 H 0.42 -4.59 6.23 -92.71 -0.58 -5.17 16 36 H 0.18 -2.23 7.45 -2.91 -0.02 -2.26 16 37 H 0.19 -2.12 6.85 -2.91 -0.02 -2.14 16 38 H 0.13 -0.56 7.96 -2.39 -0.02 -0.58 16 39 H 0.39 -1.71 8.29 -74.06 -0.61 -2.32 16 40 H -0.29 -0.08 7.11 99.48 0.71 0.63 16 41 H -0.30 -0.66 7.11 99.48 0.71 0.05 16 42 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.11 0.13 5.24 -2.39 -0.01 0.12 16 44 H 0.09 0.70 5.92 -2.39 -0.01 0.68 16 45 H 0.10 0.13 7.39 -2.39 -0.02 0.11 16 46 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: 0.00 -26.70 380.58 -0.70 -27.40 By element: Atomic # 1 Polarization: -19.00 SS G_CDS: -0.68 Total: -19.67 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 5.72 Total: 13.14 kcal Atomic # 7 Polarization: 0.91 SS G_CDS: -4.12 Total: -3.21 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -3.75 Total: -15.47 kcal Atomic # 14 Polarization: -4.33 SS G_CDS: 2.13 Total: -2.19 kcal Total: -26.70 -0.70 -27.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_10803936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.306 kcal (2) G-P(sol) polarization free energy of solvation -26.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds