Wall clock time and date at job start Sun Mar 7 2021 07:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.47171 * 2 1 4 4 C 1.34234 * 116.99977 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00016 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99739 * 180.02562 * 4 3 2 7 7 H 1.09003 * 112.84755 * 311.19911 * 6 4 3 8 8 C 1.53781 * 113.69317 * 82.46476 * 6 4 3 9 9 C 1.53777 * 87.08093 * 139.98717 * 8 6 4 10 10 O 1.42903 * 113.60728 * 89.12047 * 9 8 6 11 11 C 1.53000 * 113.69269 * 220.00844 * 9 8 6 12 12 N 1.46509 * 109.46687 * 284.06821 * 11 9 8 13 13 C 1.34779 * 119.99062 * 180.02562 * 12 11 9 14 14 O 1.21564 * 120.00861 * 359.97438 * 13 12 11 15 15 C 1.47701 * 119.99293 * 180.02562 * 13 12 11 16 16 C 1.39827 * 120.16443 * 179.97438 * 15 13 12 17 17 F 1.35099 * 120.10948 * 0.02755 * 16 15 13 18 18 C 1.38313 * 119.77852 * 179.97438 * 16 15 13 19 19 C 1.38207 * 120.11933 * 0.02562 * 18 16 15 20 20 C 1.38459 * 120.33898 * 359.97438 * 19 18 16 21 21 C 1.50697 * 119.89138 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.47339 * 120.00435 * 21 20 19 23 23 Si 1.86297 * 109.47182 * 359.97438 * 21 20 19 24 24 C 1.37863 * 120.21452 * 359.72551 * 20 19 18 25 25 C 1.53774 * 87.08184 * 334.56999 * 9 8 6 26 26 H 1.09000 * 109.47056 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46498 * 299.99762 * 1 2 3 28 28 H 1.08993 * 109.47201 * 59.99482 * 1 2 3 29 29 H 1.09000 * 109.47133 * 240.00471 * 2 1 3 30 30 H 1.08997 * 109.47643 * 119.99931 * 2 1 3 31 31 H 1.09007 * 113.61076 * 25.44374 * 8 6 4 32 32 H 1.08997 * 113.61328 * 254.54622 * 8 6 4 33 33 H 0.96700 * 114.00311 * 82.50322 * 10 9 8 34 34 H 1.08991 * 109.47106 * 44.06433 * 11 9 8 35 35 H 1.08994 * 109.46854 * 164.06937 * 11 9 8 36 36 H 0.96996 * 120.00320 * 359.97438 * 12 11 9 37 37 H 1.07999 * 119.94045 * 180.02562 * 18 16 15 38 38 H 1.07998 * 119.83455 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.47072 * 240.00273 * 21 20 19 40 40 H 0.96701 * 113.99401 * 299.99802 * 22 21 20 41 41 H 1.48492 * 110.00234 * 58.68187 * 23 21 20 42 42 H 1.48500 * 110.00240 * 180.02562 * 23 21 20 43 43 H 1.08003 * 120.05619 * 180.29940 * 24 20 19 44 44 H 1.09002 * 113.61399 * 139.97742 * 25 9 8 45 45 H 1.09001 * 113.61507 * 270.79534 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9208 2.9375 0.0000 7 1 3.4707 3.5819 -0.7552 8 6 3.9870 3.5782 1.3964 9 6 5.3570 4.1433 0.9859 10 8 5.2818 5.4205 0.3492 11 6 6.4010 4.0971 2.1034 12 7 6.1270 5.1619 3.0718 13 6 6.9234 5.3146 4.1484 14 8 7.8685 4.5687 4.3162 15 6 6.6469 6.3876 5.1250 16 6 7.4704 6.5489 6.2435 17 9 8.5229 5.7238 6.4349 18 6 7.2045 7.5567 7.1527 19 6 6.1282 8.4013 6.9567 20 6 5.3096 8.2460 5.8509 21 6 4.1391 9.1730 5.6469 22 8 4.2920 9.8677 4.4076 23 14 4.0699 10.4028 7.0446 24 6 5.5655 7.2500 4.9327 25 6 5.4582 2.9681 -0.0007 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.0395 2.8523 2.2079 32 1 3.2299 4.3449 1.5613 33 1 5.2179 6.1637 0.9646 34 1 6.3548 3.1301 2.6040 35 1 7.3945 4.2393 1.6784 36 1 5.3732 5.7573 2.9377 37 1 7.8391 7.6840 8.0172 38 1 5.9246 9.1865 7.6698 39 1 3.2160 8.5937 5.6272 40 1 5.0942 10.4051 4.3544 41 1 5.3355 11.1773 7.1028 42 1 2.9194 11.3224 6.8555 43 1 4.9281 7.1342 4.0685 44 1 5.8890 3.2424 -0.9637 45 1 5.9143 2.0759 0.4283 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_12335834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:01:58 Heat of formation + Delta-G solvation = -187.308059 kcal Electronic energy + Delta-G solvation = -31344.438709 eV Core-core repulsion = 26630.397299 eV Total energy + Delta-G solvation = -4714.041410 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.02342 -42.18754 -41.40327 -40.49238 -39.75639 -37.78632 -37.56116 -36.05479 -35.52556 -32.93791 -32.66155 -32.29202 -29.64020 -27.05531 -26.64414 -26.53263 -25.12225 -23.82413 -22.97947 -21.95915 -21.71690 -20.80045 -19.68238 -18.85852 -18.44158 -18.36482 -17.89481 -17.76483 -17.39313 -17.14941 -16.98475 -16.84612 -16.40704 -16.14332 -16.04402 -15.94550 -15.66852 -15.24878 -14.96956 -14.74881 -14.57255 -14.46965 -14.38656 -14.17684 -13.80456 -13.55830 -13.52909 -13.32833 -13.18378 -12.99125 -12.84145 -12.80136 -12.57880 -12.30447 -12.28533 -11.79854 -11.73354 -11.59070 -11.51694 -11.24640 -10.95080 -10.63490 -10.51315 -10.21183 -9.83001 -4.86452 -0.51042 -0.02779 1.02806 1.33002 1.57003 1.58135 1.64849 1.81343 2.03755 2.46167 2.82155 3.04364 3.08040 3.27681 3.33977 3.39898 3.44041 3.50635 3.53457 3.63542 3.87845 3.94665 4.00655 4.02159 4.10377 4.17643 4.27399 4.29727 4.47665 4.55995 4.58668 4.63943 4.66549 4.78277 4.79118 4.82553 4.85088 4.87285 4.88410 4.95551 5.07524 5.10934 5.11962 5.13872 5.40240 5.59339 6.21264 6.52601 6.58520 6.62112 6.95640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.470 3.530 5 O -0.539 6.539 6 C -0.100 4.100 7 H 0.145 0.855 8 C -0.136 4.136 9 C 0.114 3.886 10 O -0.538 6.538 11 C 0.107 3.893 12 N -0.707 5.707 13 C 0.557 3.443 14 O -0.570 6.570 15 C -0.188 4.188 16 C 0.133 3.867 17 F -0.138 7.138 18 C -0.153 4.153 19 C -0.051 4.051 20 C -0.130 4.130 21 C -0.071 4.071 22 O -0.542 6.542 23 Si 0.755 3.245 24 C -0.022 4.022 25 C -0.108 4.108 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.393 0.607 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.414 0.586 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.140 0.860 40 H 0.388 0.612 41 H -0.280 1.280 42 H -0.307 1.307 43 H 0.164 0.836 44 H 0.093 0.907 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.227 5.302 3.038 9.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.314 3.686 5 O -0.429 6.429 6 C -0.119 4.119 7 H 0.163 0.837 8 C -0.173 4.173 9 C 0.073 3.927 10 O -0.346 6.346 11 C -0.017 4.017 12 N -0.361 5.361 13 C 0.345 3.655 14 O -0.450 6.450 15 C -0.192 4.192 16 C 0.112 3.888 17 F -0.116 7.116 18 C -0.171 4.171 19 C -0.068 4.068 20 C -0.131 4.131 21 C -0.181 4.181 22 O -0.350 6.350 23 Si 0.661 3.339 24 C -0.041 4.041 25 C -0.146 4.146 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.133 0.867 33 H 0.244 0.756 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.253 0.747 37 H 0.183 0.817 38 H 0.183 0.817 39 H 0.158 0.842 40 H 0.238 0.762 41 H -0.207 1.207 42 H -0.235 1.235 43 H 0.181 0.819 44 H 0.112 0.888 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.837 4.584 2.693 8.660 hybrid contribution 0.897 0.207 -0.609 1.104 sum -5.940 4.791 2.084 7.911 Atomic orbital electron populations 1.21824 0.90599 1.04262 1.03804 1.23263 0.97005 0.79390 1.02436 1.86528 1.24214 1.33434 1.83374 1.24069 0.80564 0.92955 0.70984 1.90672 1.61185 1.44241 1.46804 1.22520 0.96806 0.89695 1.02870 0.83696 1.23652 0.98252 1.01183 0.94226 1.22085 0.93452 0.85456 0.91757 1.86584 1.96197 1.14668 1.37131 1.21901 0.99432 0.91520 0.88859 1.45552 1.31999 1.35008 1.23538 1.18318 0.81932 0.83644 0.81625 1.90866 1.31029 1.46730 1.76334 1.19994 1.00910 1.01079 0.97211 1.18238 0.84992 0.90277 0.95275 1.91561 1.54614 1.70738 1.94719 1.21374 1.00649 0.94705 1.00415 1.21391 0.91609 0.97434 0.96389 1.20403 0.98749 0.98210 0.95712 1.25097 0.98729 0.99098 0.95136 1.86595 1.48729 1.64893 1.34821 0.94197 0.77023 0.79243 0.83443 1.21205 0.93198 0.90747 0.98919 1.23067 0.93497 0.96880 1.01159 0.88611 0.91095 0.91245 0.91545 0.91400 0.88606 0.86695 0.75595 0.90442 0.91123 0.74651 0.81737 0.81690 0.84200 0.76215 1.20688 1.23492 0.81869 0.88840 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.54 10.29 71.98 0.74 1.28 16 2 C 0.05 0.07 6.19 71.98 0.45 0.51 16 3 O -0.36 -1.27 10.22 -51.45 -0.53 -1.79 16 4 C 0.47 2.12 7.49 71.24 0.53 2.66 16 5 O -0.54 -5.94 15.65 21.98 0.34 -5.59 16 6 C -0.10 0.18 4.19 -11.01 -0.05 0.13 16 7 H 0.15 -0.62 8.14 -2.39 -0.02 -0.63 16 8 C -0.14 0.80 7.02 31.12 0.22 1.01 16 9 C 0.11 -0.51 1.39 -10.27 -0.01 -0.52 16 10 O -0.54 2.76 13.41 -148.98 -2.00 0.77 16 11 C 0.11 -0.12 5.24 86.38 0.45 0.33 16 12 N -0.71 2.32 5.27 -466.11 -2.45 -0.13 16 13 C 0.56 2.81 7.77 86.74 0.67 3.48 16 14 O -0.57 -8.85 15.34 -3.92 -0.06 -8.92 16 15 C -0.19 -0.15 5.88 -20.05 -0.12 -0.27 16 16 C 0.13 0.47 7.29 22.67 0.17 0.63 16 17 F -0.14 -1.54 15.55 44.97 0.70 -0.84 16 18 C -0.15 0.56 10.01 22.28 0.22 0.78 16 19 C -0.05 0.41 8.66 22.32 0.19 0.60 16 20 C -0.13 1.07 5.39 -19.90 -0.11 0.96 16 21 C -0.07 0.68 2.82 71.23 0.20 0.88 16 22 O -0.54 3.62 12.76 -148.98 -1.90 1.72 16 23 Si 0.75 -6.43 29.78 68.60 2.04 -4.39 16 24 C -0.02 0.15 9.09 22.52 0.20 0.35 16 25 C -0.11 0.10 6.79 31.12 0.21 0.31 16 26 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 27 H 0.07 -0.28 8.14 -2.38 -0.02 -0.30 16 28 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 30 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 31 H 0.10 -0.44 8.02 -2.38 -0.02 -0.46 16 32 H 0.11 -1.16 8.14 -2.39 -0.02 -1.18 16 33 H 0.39 -4.80 7.70 -74.06 -0.57 -5.37 16 34 H 0.08 0.10 8.09 -2.39 -0.02 0.08 16 35 H 0.07 0.16 8.14 -2.39 -0.02 0.15 16 36 H 0.41 -4.54 5.45 -92.71 -0.51 -5.04 16 37 H 0.17 -1.20 8.06 -2.91 -0.02 -1.22 16 38 H 0.17 -2.15 4.86 -2.91 -0.01 -2.16 16 39 H 0.14 -1.72 7.96 -2.38 -0.02 -1.74 16 40 H 0.39 -4.39 8.70 -74.06 -0.64 -5.04 16 41 H -0.28 1.27 7.11 99.48 0.71 1.98 16 42 H -0.31 -0.21 7.11 99.48 0.71 0.49 16 43 H 0.16 -2.06 6.41 -2.91 -0.02 -2.08 16 44 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.10 0.16 7.40 -2.39 -0.02 0.14 16 Total: 0.00 -28.73 383.59 -0.49 -29.21 By element: Atomic # 1 Polarization: -22.57 SS G_CDS: -0.61 Total: -23.18 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 3.98 Total: 13.13 kcal Atomic # 7 Polarization: 2.32 SS G_CDS: -2.45 Total: -0.13 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -4.14 Total: -13.81 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.70 Total: -0.84 kcal Atomic # 14 Polarization: -6.43 SS G_CDS: 2.04 Total: -4.39 kcal Total: -28.73 -0.49 -29.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_12335834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.094 kcal (2) G-P(sol) polarization free energy of solvation -28.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds