Wall clock time and date at job start Sun Mar 7 2021 07:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.47183 * 2 1 4 4 C 1.34218 * 117.00604 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99813 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00516 * 179.97438 * 4 3 2 7 7 H 1.08993 * 112.85036 * 48.80074 * 6 4 3 8 8 C 1.53781 * 113.61439 * 180.02562 * 6 4 3 9 9 C 1.53787 * 87.07955 * 140.06644 * 8 6 4 10 10 O 1.42895 * 113.61802 * 89.19952 * 9 8 6 11 11 C 1.53006 * 113.61055 * 220.01695 * 9 8 6 12 12 N 1.46500 * 109.46998 * 178.46922 * 11 9 8 13 13 C 1.34769 * 120.00237 * 180.02562 * 12 11 9 14 14 O 1.21573 * 120.00109 * 359.97438 * 13 12 11 15 15 C 1.47728 * 120.00444 * 180.02562 * 13 12 11 16 16 C 1.39626 * 120.12200 * 179.72243 * 15 13 12 17 17 C 1.37855 * 119.88208 * 179.67314 * 16 15 13 18 18 C 1.50700 * 119.94366 * 180.34045 * 17 16 15 19 19 O 1.42900 * 109.47143 * 255.28182 * 18 17 16 20 20 Si 1.86308 * 109.46744 * 135.28337 * 18 17 16 21 21 C 1.38641 * 120.11570 * 0.62492 * 17 16 15 22 22 F 1.35094 * 119.88078 * 179.69553 * 21 17 16 23 23 C 1.38677 * 120.23592 * 359.67182 * 21 17 16 24 24 C 1.37812 * 120.12226 * 0.02562 * 23 21 17 25 25 C 1.53780 * 87.17190 * 334.60431 * 9 8 6 26 26 H 1.08997 * 109.47261 * 60.00223 * 1 2 3 27 27 H 1.09009 * 109.46571 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47586 * 299.99819 * 1 2 3 29 29 H 1.08992 * 109.47362 * 239.99984 * 2 1 3 30 30 H 1.09000 * 109.46814 * 119.99565 * 2 1 3 31 31 H 1.08991 * 113.61661 * 25.51822 * 8 6 4 32 32 H 1.09001 * 113.61116 * 254.61089 * 8 6 4 33 33 H 0.96694 * 114.00383 * 181.52650 * 10 9 8 34 34 H 1.08993 * 109.46955 * 298.47147 * 11 9 8 35 35 H 1.09000 * 109.47050 * 58.46976 * 11 9 8 36 36 H 0.97010 * 119.99909 * 359.97438 * 12 11 9 37 37 H 1.08004 * 120.05988 * 359.97438 * 16 15 13 38 38 H 1.08996 * 109.46988 * 15.28346 * 18 17 16 39 39 H 0.96702 * 113.99692 * 180.02562 * 19 18 17 40 40 H 1.48498 * 110.00160 * 60.00253 * 20 18 17 41 41 H 1.48503 * 109.99301 * 181.32129 * 20 18 17 42 42 H 1.08006 * 119.93707 * 180.02562 * 23 21 17 43 43 H 1.08005 * 120.05960 * 179.97438 * 24 23 21 44 44 H 1.09006 * 113.61092 * 139.93608 * 25 9 8 45 45 H 1.08997 * 113.61844 * 270.84293 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.4707 3.5819 0.7551 8 6 5.4581 2.9682 0.0001 9 6 5.3563 4.1437 -0.9863 10 8 5.2834 5.4208 -0.3494 11 6 6.3986 4.0966 -2.1054 12 7 6.1971 5.2324 -3.0085 13 6 7.0041 5.3965 -4.0753 14 8 7.8997 4.6023 -4.2880 15 6 6.8013 6.5421 -4.9857 16 6 7.6396 6.7178 -6.0884 17 6 7.4416 7.7848 -6.9386 18 6 8.3408 7.9714 -8.1334 19 8 9.2587 9.0363 -7.8772 20 14 7.3090 8.3871 -9.6280 21 6 6.4205 8.6899 -6.6929 22 9 6.2347 9.7372 -7.5257 23 6 5.5889 8.5235 -5.5957 24 6 5.7741 7.4569 -4.7429 25 6 3.9855 3.5809 -1.3972 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9127 2.0757 -0.4297 32 1 5.8892 3.2423 0.9629 33 1 5.1957 6.1623 -0.9638 34 1 7.3980 4.1486 -1.6735 35 1 6.2916 3.1659 -2.6626 36 1 5.4823 5.8659 -2.8391 37 1 8.4386 6.0163 -6.2778 38 1 8.8945 7.0511 -8.3187 39 1 9.8695 9.2129 -8.6058 40 1 6.5490 9.6401 -9.3881 41 1 8.1812 8.5422 -10.8199 42 1 4.7947 9.2313 -5.4091 43 1 5.1261 7.3285 -3.8884 44 1 3.2294 4.3489 -1.5607 45 1 4.0367 2.8562 -2.2097 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16466198_12496548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:03:02 Heat of formation + Delta-G solvation = -174.275252 kcal Electronic energy + Delta-G solvation = -30853.213380 eV Core-core repulsion = 26139.737115 eV Total energy + Delta-G solvation = -4713.476265 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.34120 -42.17702 -41.40621 -40.47800 -39.47380 -37.78963 -37.65866 -36.11590 -35.54342 -33.19228 -32.72887 -32.16108 -29.69401 -27.19651 -27.06014 -26.47607 -24.66032 -23.73142 -23.44046 -21.96106 -21.57124 -20.89213 -19.52501 -18.94513 -18.73419 -18.62401 -18.20374 -17.71416 -17.49105 -17.35556 -17.08481 -16.81429 -16.58459 -16.21343 -16.14148 -15.51057 -15.34090 -15.15353 -15.06252 -14.84931 -14.66813 -14.52809 -14.27924 -14.14385 -13.94204 -13.81833 -13.65417 -13.53134 -13.28371 -13.00112 -12.92100 -12.80965 -12.64236 -12.40155 -12.36144 -11.82076 -11.53816 -11.48100 -11.35183 -11.15090 -11.02603 -10.81453 -10.38675 -10.20055 -9.86023 -4.98558 -0.55848 -0.09017 1.14337 1.18155 1.52925 1.57974 1.59989 1.81172 1.98332 2.46350 2.62747 2.95496 2.98177 3.08961 3.21421 3.29918 3.33389 3.45649 3.47996 3.57890 3.78905 3.83419 3.92672 3.98014 4.03545 4.05286 4.14751 4.23230 4.26918 4.42651 4.44706 4.50248 4.59326 4.66211 4.67210 4.70439 4.76628 4.77475 4.79119 4.90540 4.96546 4.98288 4.99518 5.08157 5.45035 5.50096 6.13639 6.26016 6.32067 6.73371 6.98085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.470 3.530 5 O -0.504 6.504 6 C -0.103 4.103 7 H 0.132 0.868 8 C -0.100 4.100 9 C 0.097 3.903 10 O -0.529 6.529 11 C 0.104 3.896 12 N -0.728 5.728 13 C 0.565 3.435 14 O -0.525 6.525 15 C -0.149 4.149 16 C -0.009 4.009 17 C -0.114 4.114 18 C -0.075 4.075 19 O -0.533 6.533 20 Si 0.672 3.328 21 C 0.137 3.863 22 F -0.117 7.117 23 C -0.157 4.157 24 C -0.053 4.053 25 C -0.145 4.145 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.377 0.623 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.396 0.604 37 H 0.150 0.850 38 H 0.082 0.918 39 H 0.383 0.617 40 H -0.227 1.227 41 H -0.264 1.264 42 H 0.148 0.852 43 H 0.137 0.863 44 H 0.091 0.909 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 0.287 -0.618 5.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.273 6.273 4 C 0.313 3.687 5 O -0.392 6.392 6 C -0.122 4.122 7 H 0.150 0.850 8 C -0.138 4.138 9 C 0.055 3.945 10 O -0.335 6.335 11 C -0.020 4.020 12 N -0.382 5.382 13 C 0.353 3.647 14 O -0.401 6.401 15 C -0.152 4.152 16 C -0.027 4.027 17 C -0.115 4.115 18 C -0.184 4.184 19 O -0.341 6.341 20 Si 0.572 3.428 21 C 0.117 3.883 22 F -0.095 7.095 23 C -0.176 4.176 24 C -0.072 4.072 25 C -0.183 4.183 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.225 0.775 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.232 0.768 37 H 0.168 0.832 38 H 0.100 0.900 39 H 0.232 0.768 40 H -0.151 1.151 41 H -0.189 1.189 42 H 0.166 0.834 43 H 0.155 0.845 44 H 0.110 0.890 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.972 -0.352 -0.313 4.994 hybrid contribution 0.659 1.159 -0.435 1.403 sum -4.312 0.807 -0.749 4.451 Atomic orbital electron populations 1.21823 0.92311 1.03285 1.03655 1.23095 0.95631 0.79837 1.02781 1.86514 1.24359 1.32772 1.83656 1.23509 0.80711 0.92285 0.72182 1.90692 1.60512 1.42909 1.45061 1.22444 0.97269 0.91056 1.01395 0.85026 1.23050 0.93248 0.96570 1.00892 1.22393 0.93684 0.85531 0.92899 1.86615 1.96052 1.14463 1.36352 1.21984 1.00033 0.90010 0.89935 1.45761 1.35222 1.29651 1.27610 1.18066 0.81446 0.84795 0.80393 1.90841 1.31751 1.44651 1.72892 1.19879 0.99470 0.97535 0.98311 1.21010 0.96549 0.95202 0.89984 1.19227 0.96861 0.96635 0.98787 1.24668 0.96415 0.93667 1.03643 1.86599 1.49081 1.53897 1.44496 0.95506 0.85255 0.87640 0.74435 1.17900 0.95606 0.85071 0.89719 1.91573 1.94341 1.55127 1.68506 1.21108 1.01314 1.00508 0.94622 1.21134 0.95598 0.92334 0.98088 1.23715 0.98174 1.01020 0.95398 0.91380 0.89986 0.91347 0.91087 0.91055 0.86654 0.88680 0.77473 0.89664 0.89482 0.76814 0.83233 0.89965 0.76826 1.15052 1.18917 0.83436 0.84511 0.89021 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.29 10.29 37.16 0.38 0.68 16 2 C 0.06 0.00 6.19 37.16 0.23 0.23 16 3 O -0.36 -0.44 10.22 -39.23 -0.40 -0.85 16 4 C 0.47 0.68 7.49 36.01 0.27 0.95 16 5 O -0.50 -2.14 15.65 -18.75 -0.29 -2.43 16 6 C -0.10 0.14 4.19 -90.87 -0.38 -0.24 16 7 H 0.13 -0.28 8.14 -51.93 -0.42 -0.70 16 8 C -0.10 0.14 6.80 -25.92 -0.18 -0.03 16 9 C 0.10 -0.27 1.46 -89.80 -0.13 -0.40 16 10 O -0.53 1.43 13.40 -35.23 -0.47 0.96 16 11 C 0.10 -0.20 5.30 -4.04 -0.02 -0.22 16 12 N -0.73 1.99 5.29 -61.29 -0.32 1.67 16 13 C 0.57 0.30 7.77 -12.39 -0.10 0.20 16 14 O -0.52 -2.39 16.34 5.30 0.09 -2.31 16 15 C -0.15 0.09 5.87 -104.97 -0.62 -0.52 16 16 C -0.01 0.00 9.21 -39.20 -0.36 -0.36 16 17 C -0.11 -0.07 4.80 -104.61 -0.50 -0.57 16 18 C -0.08 0.00 2.79 36.01 0.10 0.10 16 19 O -0.53 -0.73 12.86 -35.23 -0.45 -1.18 16 20 Si 0.67 -0.32 30.77 -169.99 -5.23 -5.55 16 21 C 0.14 0.09 6.67 -39.27 -0.26 -0.17 16 22 F -0.12 -0.28 12.84 2.25 0.03 -0.26 16 23 C -0.16 0.28 10.01 -39.57 -0.40 -0.11 16 24 C -0.05 0.16 9.54 -39.20 -0.37 -0.22 16 25 C -0.15 0.46 7.03 -25.83 -0.18 0.28 16 26 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 27 H 0.08 -0.25 8.14 -51.92 -0.42 -0.68 16 28 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 29 H 0.07 0.00 8.13 -51.93 -0.42 -0.43 16 30 H 0.07 0.01 8.13 -51.93 -0.42 -0.41 16 31 H 0.12 -0.10 7.39 -51.93 -0.38 -0.48 16 32 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 33 H 0.38 -2.34 7.42 45.56 0.34 -2.00 16 34 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 35 H 0.09 -0.11 7.98 -51.93 -0.41 -0.53 16 36 H 0.40 -2.36 5.15 -40.82 -0.21 -2.57 16 37 H 0.15 0.04 7.59 -52.48 -0.40 -0.36 16 38 H 0.08 -0.16 7.77 -51.93 -0.40 -0.56 16 39 H 0.38 -0.98 8.74 45.56 0.40 -0.59 16 40 H -0.23 -0.56 5.33 56.52 0.30 -0.26 16 41 H -0.26 -0.41 7.11 56.52 0.40 -0.01 16 42 H 0.15 -0.56 8.06 -52.48 -0.42 -0.99 16 43 H 0.14 -0.92 6.40 -52.48 -0.34 -1.26 16 44 H 0.09 -0.41 8.14 -51.93 -0.42 -0.83 16 45 H 0.10 -0.28 7.94 -51.93 -0.41 -0.70 16 LS Contribution 382.92 15.07 5.77 5.77 Total: 0.00 -10.90 382.92 -9.15 -20.06 By element: Atomic # 1 Polarization: -10.11 SS G_CDS: -5.35 Total: -15.46 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -2.52 Total: -0.42 kcal Atomic # 7 Polarization: 1.99 SS G_CDS: -0.32 Total: 1.67 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -1.53 Total: -5.81 kcal Atomic # 9 Polarization: -0.28 SS G_CDS: 0.03 Total: -0.26 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: -5.23 Total: -5.55 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -10.90 -9.15 -20.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_12496548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.220 kcal (2) G-P(sol) polarization free energy of solvation -10.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds