Wall clock time and date at job start Sun Mar 7 2021 07:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.46939 * 2 1 4 4 C 1.34230 * 117.00115 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99696 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99951 * 179.97438 * 4 3 2 7 7 H 1.08993 * 112.91105 * 311.25397 * 6 4 3 8 8 C 1.53784 * 113.61504 * 82.50574 * 6 4 3 9 9 C 1.53787 * 87.08368 * 139.97573 * 8 6 4 10 10 O 1.42904 * 113.68377 * 89.12657 * 9 8 6 11 11 C 1.52994 * 113.61462 * 220.01946 * 9 8 6 12 12 N 1.46501 * 109.47145 * 282.49599 * 11 9 8 13 13 C 1.34776 * 119.99989 * 179.97438 * 12 11 9 14 14 O 1.21278 * 120.00006 * 0.02562 * 13 12 11 15 15 C 1.50694 * 119.99984 * 180.02562 * 13 12 11 16 16 N 1.46503 * 109.47346 * 180.02562 * 15 13 12 17 17 C 1.35030 * 125.93385 * 124.71733 * 16 15 13 18 18 C 1.35080 * 107.98192 * 179.83780 * 17 16 15 19 19 C 1.50709 * 126.07782 * 180.19698 * 18 17 16 20 20 O 1.42900 * 109.47051 * 105.25222 * 19 18 17 21 21 Si 1.86289 * 109.47040 * 345.25091 * 19 18 17 22 22 C 1.40852 * 107.84769 * 0.42397 * 18 17 16 23 23 C 1.48416 * 126.03643 * 179.77294 * 22 18 17 24 24 C 1.39325 * 120.12265 * 316.94351 * 23 22 18 25 25 C 1.38021 * 119.88195 * 179.72354 * 24 23 22 26 26 C 1.38320 * 120.11652 * 0.55461 * 25 24 23 27 27 C 1.38319 * 120.24258 * 359.72868 * 26 25 24 28 28 C 1.38023 * 120.11945 * 359.97438 * 27 26 25 29 29 N 1.31612 * 107.92080 * 359.73916 * 22 18 17 30 30 C 1.53782 * 87.08115 * 334.56738 * 9 8 6 31 31 H 1.09005 * 109.47102 * 299.99570 * 1 2 3 32 32 H 1.08993 * 109.47559 * 60.00245 * 1 2 3 33 33 H 1.08999 * 109.46784 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46703 * 240.00317 * 2 1 3 35 35 H 1.09001 * 109.46993 * 119.99961 * 2 1 3 36 36 H 1.08999 * 113.61202 * 25.43197 * 8 6 4 37 37 H 1.08995 * 113.61375 * 254.52897 * 8 6 4 38 38 H 0.96702 * 113.99890 * 80.94223 * 10 9 8 39 39 H 1.08999 * 109.46885 * 162.50068 * 11 9 8 40 40 H 1.09000 * 109.47573 * 42.49883 * 11 9 8 41 41 H 0.97002 * 120.00011 * 0.02562 * 12 11 9 42 42 H 1.09000 * 109.47558 * 300.00300 * 15 13 12 43 43 H 1.08999 * 109.47320 * 60.00743 * 15 13 12 44 44 H 1.08007 * 126.01151 * 359.97120 * 17 16 15 45 45 H 1.08998 * 109.47026 * 225.24707 * 19 18 17 46 46 H 0.96695 * 113.99896 * 180.02562 * 20 19 18 47 47 H 1.48505 * 110.00193 * 59.99878 * 21 19 18 48 48 H 1.48504 * 110.00137 * 181.31706 * 21 19 18 49 49 H 1.08003 * 120.05691 * 359.97438 * 24 23 22 50 50 H 1.07994 * 119.94386 * 180.28312 * 25 24 23 51 51 H 1.07998 * 119.87898 * 179.74171 * 26 25 24 52 52 H 1.08002 * 119.94357 * 180.02562 * 27 26 25 53 53 H 1.07999 * 120.06124 * 180.02562 * 28 27 26 54 54 H 1.09003 * 113.61149 * 139.97239 * 30 9 8 55 55 H 1.08991 * 113.61777 * 270.79663 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 -0.0012 7 1 3.4707 3.5823 -0.7559 8 6 3.9867 3.5774 1.3957 9 6 5.3568 4.1428 0.9856 10 8 5.2835 5.4205 0.3497 11 6 6.3993 4.0948 2.1044 12 7 6.1471 5.1817 3.0538 13 6 6.9455 5.3363 4.1286 14 8 7.8729 4.5760 4.3096 15 6 6.6857 6.4539 5.1056 16 7 7.6841 6.4080 6.1768 17 6 8.4964 7.4212 6.5468 18 6 9.2659 6.9869 7.5685 19 6 10.3138 7.7908 8.2944 20 8 9.8172 8.1707 9.5794 21 14 10.7178 9.3187 7.3082 22 6 8.9185 5.6474 7.8315 23 6 9.5200 4.7778 8.8729 24 6 10.8991 4.7751 9.0707 25 6 11.4527 3.9686 10.0444 26 6 10.6419 3.1555 10.8156 27 6 9.2727 3.1498 10.6196 28 6 8.7080 3.9568 9.6527 29 7 7.9659 5.3036 6.9910 30 6 5.4582 2.9682 -0.0017 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5137 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 4.0392 2.8510 2.2066 37 1 3.2297 4.3439 1.5610 38 1 5.1961 6.1615 0.9647 39 1 7.3957 4.2092 1.6775 40 1 6.3333 3.1377 2.6218 41 1 5.4052 5.7895 2.9093 42 1 6.7518 7.4112 4.5886 43 1 5.6892 6.3393 5.5322 44 1 8.5244 8.4064 6.1051 45 1 11.2140 7.1884 8.4164 46 1 10.4404 8.6924 10.1034 47 1 9.4985 10.1486 7.1349 48 1 11.7729 10.1041 7.9977 49 1 11.5335 5.4060 8.4658 50 1 12.5211 3.9692 10.2016 51 1 11.0795 2.5229 11.5736 52 1 8.6441 2.5132 11.2247 53 1 7.6388 3.9519 9.5007 54 1 5.8890 3.2431 -0.9645 55 1 5.9142 2.0758 0.4268 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_12622748.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:03:06 Heat of formation + Delta-G solvation = -57.935524 kcal Electronic energy + Delta-G solvation = -39083.059667 eV Core-core repulsion = 33861.939146 eV Total energy + Delta-G solvation = -5221.120520 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.187 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.49991 -42.14624 -40.99066 -40.11643 -39.72821 -37.80884 -37.76259 -36.00043 -35.40975 -34.83579 -32.70926 -32.43556 -32.01917 -31.51486 -30.12030 -28.41597 -27.01501 -26.37179 -25.75978 -24.16242 -23.70442 -23.43880 -22.02616 -21.91270 -21.54015 -20.89822 -20.78766 -19.20358 -18.66629 -18.52969 -18.35036 -17.81654 -17.71817 -17.40966 -17.36882 -16.85126 -16.66327 -16.35578 -16.08343 -16.03980 -15.73271 -15.62070 -15.23937 -15.16042 -14.89111 -14.78734 -14.60268 -14.47067 -14.33650 -14.18732 -14.15217 -13.82668 -13.77447 -13.58453 -13.52759 -13.42463 -13.22969 -13.00227 -12.78947 -12.67596 -12.59225 -12.34553 -12.29952 -12.18487 -11.98891 -11.77925 -11.60753 -11.57398 -11.50385 -11.27622 -10.93066 -10.64344 -10.29494 -10.24310 -9.88209 -9.79709 -9.31097 -4.85367 0.10703 0.45455 0.79143 1.01858 1.25251 1.39114 1.45398 1.58746 1.64173 1.66785 1.98171 2.00396 2.85131 2.87854 3.08334 3.26396 3.35380 3.41171 3.45563 3.59872 3.63043 3.78680 3.88854 3.91019 3.92964 3.95624 4.00592 4.05252 4.12432 4.14040 4.19134 4.25068 4.28050 4.30383 4.36336 4.52393 4.56133 4.56412 4.63065 4.67503 4.75669 4.78330 4.84695 4.86012 4.87865 4.89086 4.98087 5.08998 5.10343 5.11290 5.18915 5.28110 5.39061 5.55353 5.56366 5.59934 5.88502 6.02869 6.35140 6.57257 6.60841 6.67508 6.70627 7.10541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.468 3.532 5 O -0.540 6.540 6 C -0.101 4.101 7 H 0.147 0.853 8 C -0.136 4.136 9 C 0.120 3.880 10 O -0.537 6.537 11 C 0.111 3.889 12 N -0.709 5.709 13 C 0.499 3.501 14 O -0.561 6.561 15 C 0.110 3.890 16 N -0.360 5.360 17 C 0.075 3.925 18 C -0.226 4.226 19 C -0.054 4.054 20 O -0.558 6.558 21 Si 0.769 3.231 22 C 0.108 3.892 23 C -0.026 4.026 24 C -0.106 4.106 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.127 4.127 28 C -0.115 4.115 29 N -0.293 5.293 30 C -0.111 4.111 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.396 0.604 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.420 0.580 42 H 0.183 0.817 43 H 0.142 0.858 44 H 0.216 0.784 45 H 0.077 0.923 46 H 0.389 0.611 47 H -0.274 1.274 48 H -0.287 1.287 49 H 0.137 0.863 50 H 0.151 0.849 51 H 0.147 0.853 52 H 0.140 0.860 53 H 0.112 0.888 54 H 0.093 0.907 55 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 6.919 -2.688 8.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.313 3.687 5 O -0.430 6.430 6 C -0.120 4.120 7 H 0.165 0.835 8 C -0.173 4.173 9 C 0.078 3.922 10 O -0.345 6.345 11 C -0.013 4.013 12 N -0.365 5.365 13 C 0.284 3.716 14 O -0.438 6.438 15 C -0.014 4.014 16 N -0.142 5.142 17 C -0.071 4.071 18 C -0.237 4.237 19 C -0.163 4.163 20 O -0.367 6.367 21 Si 0.671 3.329 22 C -0.057 4.057 23 C -0.028 4.028 24 C -0.125 4.125 25 C -0.139 4.139 26 C -0.138 4.138 27 C -0.145 4.145 28 C -0.134 4.134 29 N -0.114 5.114 30 C -0.148 4.148 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.248 0.752 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.259 0.741 42 H 0.200 0.800 43 H 0.160 0.840 44 H 0.233 0.767 45 H 0.094 0.906 46 H 0.238 0.762 47 H -0.200 1.200 48 H -0.213 1.213 49 H 0.154 0.846 50 H 0.168 0.832 51 H 0.165 0.835 52 H 0.158 0.842 53 H 0.130 0.870 54 H 0.112 0.888 55 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.061 5.331 -3.864 7.736 hybrid contribution 0.151 0.489 1.852 1.921 sum -3.910 5.820 -2.013 7.294 Atomic orbital electron populations 1.21823 0.90562 1.04274 1.03813 1.23258 0.97033 0.79420 1.02390 1.86525 1.24266 1.33399 1.83383 1.24138 0.80542 0.93082 0.70955 1.90674 1.61204 1.44321 1.46841 1.22552 0.96838 0.89577 1.03010 0.83532 1.23648 0.98560 1.01145 0.93970 1.21998 0.93213 0.85428 0.91592 1.86596 1.95967 1.14698 1.37236 1.21761 0.99308 0.91024 0.89246 1.45550 1.33357 1.33338 1.24303 1.21045 0.82078 0.86227 0.82215 1.90847 1.32056 1.46152 1.74739 1.22030 0.92597 1.01375 0.85384 1.48114 1.30289 1.08401 1.27377 1.22762 0.91610 0.95418 0.97268 1.19617 1.06841 0.94154 1.03121 1.24485 0.96151 1.07129 0.88490 1.86596 1.46643 1.74986 1.28525 0.94260 0.78066 0.73487 0.87099 1.20873 0.95552 0.93917 0.95357 1.18001 0.93792 0.96385 0.94647 1.21346 0.93095 0.99444 0.98587 1.21421 1.01327 0.95953 0.95247 1.21581 0.93482 0.98934 0.99779 1.21350 0.96146 0.99061 0.97952 1.21261 0.99552 0.96325 0.96275 1.77686 1.18655 1.08725 1.06340 1.23066 0.93422 0.97049 1.01296 0.91147 0.91155 0.88620 0.91511 0.91538 0.89098 0.86542 0.75248 0.91367 0.91557 0.74103 0.79982 0.83997 0.76728 0.90553 0.76172 1.19978 1.21342 0.84561 0.83173 0.83532 0.84208 0.86985 0.88815 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.52 10.29 71.98 0.74 1.26 16 2 C 0.05 0.08 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.28 10.22 -51.42 -0.53 -1.81 16 4 C 0.47 2.11 7.48 71.23 0.53 2.64 16 5 O -0.54 -6.09 15.65 21.97 0.34 -5.74 16 6 C -0.10 0.25 4.20 -11.01 -0.05 0.20 16 7 H 0.15 -0.76 8.14 -2.39 -0.02 -0.78 16 8 C -0.14 0.93 7.02 31.12 0.22 1.15 16 9 C 0.12 -0.76 1.41 -10.27 -0.01 -0.77 16 10 O -0.54 4.34 13.41 -148.98 -2.00 2.35 16 11 C 0.11 -0.37 5.26 86.38 0.45 0.08 16 12 N -0.71 5.89 5.33 -463.08 -2.47 3.42 16 13 C 0.50 -0.35 7.86 87.66 0.69 0.34 16 14 O -0.56 -7.06 15.70 -3.02 -0.05 -7.11 16 15 C 0.11 -0.80 6.99 85.63 0.60 -0.20 16 16 N -0.36 -1.31 3.40 -351.92 -1.20 -2.51 16 17 C 0.07 0.09 9.96 83.47 0.83 0.92 16 18 C -0.23 -1.47 5.39 -19.95 -0.11 -1.57 16 19 C -0.05 -0.12 2.51 71.24 0.18 0.06 16 20 O -0.56 -2.90 12.86 -148.98 -1.92 -4.82 16 21 Si 0.77 -2.40 30.77 68.60 2.11 -0.29 16 22 C 0.11 1.33 6.66 42.53 0.28 1.61 16 23 C -0.03 -0.31 5.74 -20.04 -0.12 -0.42 16 24 C -0.11 -0.77 8.88 22.48 0.20 -0.57 16 25 C -0.12 -0.49 10.03 22.24 0.22 -0.27 16 26 C -0.12 -0.49 10.04 22.31 0.22 -0.27 16 27 C -0.13 -0.85 10.03 22.24 0.22 -0.63 16 28 C -0.11 -1.28 9.78 22.48 0.22 -1.06 16 29 N -0.29 -3.81 11.67 -48.16 -0.56 -4.38 16 30 C -0.11 0.18 6.79 31.12 0.21 0.39 16 31 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 32 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 34 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 35 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 36 H 0.09 -0.42 7.99 -2.39 -0.02 -0.44 16 37 H 0.12 -1.34 8.14 -2.39 -0.02 -1.36 16 38 H 0.40 -6.62 7.62 -74.06 -0.56 -7.19 16 39 H 0.07 0.02 8.14 -2.39 -0.02 0.01 16 40 H 0.07 0.07 8.05 -2.39 -0.02 0.05 16 41 H 0.42 -7.36 7.33 -92.71 -0.68 -8.04 16 42 H 0.18 -3.34 8.07 -2.39 -0.02 -3.36 16 43 H 0.14 -1.67 8.14 -2.39 -0.02 -1.69 16 44 H 0.22 -1.68 6.35 -2.91 -0.02 -1.70 16 45 H 0.08 0.03 5.57 -2.39 -0.01 0.02 16 46 H 0.39 -1.15 8.74 -74.06 -0.65 -1.80 16 47 H -0.27 -0.03 7.04 99.48 0.70 0.67 16 48 H -0.29 -0.40 7.11 99.48 0.71 0.30 16 49 H 0.14 0.51 6.24 -2.91 -0.02 0.49 16 50 H 0.15 -0.25 8.06 -2.91 -0.02 -0.27 16 51 H 0.15 -0.18 8.06 -2.91 -0.02 -0.20 16 52 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 53 H 0.11 1.31 8.06 -2.91 -0.02 1.28 16 54 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 55 H 0.10 0.16 7.40 -2.39 -0.02 0.14 16 Total: 0.00 -40.98 462.65 -1.17 -42.15 By element: Atomic # 1 Polarization: -23.77 SS G_CDS: -0.90 Total: -24.66 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.99 Total: 3.41 kcal Atomic # 7 Polarization: 0.76 SS G_CDS: -4.23 Total: -3.46 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -4.14 Total: -17.14 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: 2.11 Total: -0.29 kcal Total: -40.98 -1.17 -42.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_12622748.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.786 kcal (2) G-P(sol) polarization free energy of solvation -40.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds