Wall clock time and date at job start Sun Mar 7 2021 07:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47074 * 2 1 4 4 C 1.34229 * 117.00168 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00149 * 179.97438 * 4 3 2 7 7 H 1.08996 * 112.84997 * 309.67377 * 6 4 3 8 8 C 1.53782 * 113.61178 * 80.86927 * 6 4 3 9 9 C 1.53953 * 87.01933 * 139.95231 * 8 6 4 10 10 O 1.42900 * 113.53635 * 89.18754 * 9 8 6 11 11 C 1.52995 * 113.74338 * 220.05536 * 9 8 6 12 12 N 1.46506 * 109.47290 * 282.59797 * 11 9 8 13 13 C 1.34767 * 120.00181 * 179.97438 * 12 11 9 14 14 O 1.21578 * 120.00251 * 359.97438 * 13 12 11 15 15 C 1.47672 * 120.00218 * 179.97438 * 13 12 11 16 16 C 1.40006 * 120.45072 * 353.98915 * 15 13 12 17 17 N 1.31303 * 121.37723 * 179.97438 * 16 15 13 18 18 C 1.32818 * 121.89104 * 0.02562 * 17 16 15 19 19 N 1.37158 * 132.96782 * 179.97438 * 18 17 16 20 20 C 1.36948 * 110.11384 * 180.02562 * 19 18 17 21 21 C 1.34178 * 109.95312 * 0.02562 * 20 19 18 22 22 C 1.50698 * 126.59765 * 179.97438 * 21 20 19 23 23 O 1.42902 * 109.47143 * 105.02503 * 22 21 20 24 24 Si 1.86304 * 109.47168 * 345.02464 * 22 21 20 25 25 C 1.41018 * 120.08316 * 0.02562 * 18 17 16 26 26 C 1.39282 * 119.61730 * 359.71970 * 25 18 17 27 27 C 1.50703 * 121.03136 * 180.29829 * 26 25 18 28 28 C 1.53774 * 113.61420 * 178.47612 * 6 4 3 29 29 H 1.08998 * 109.46751 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47004 * 299.99630 * 1 2 3 31 31 H 1.08999 * 109.46808 * 59.99934 * 1 2 3 32 32 H 1.09004 * 109.47480 * 240.00445 * 2 1 3 33 33 H 1.09000 * 109.47325 * 120.00067 * 2 1 3 34 34 H 1.09000 * 113.61074 * 254.53076 * 8 6 4 35 35 H 1.08995 * 113.61421 * 25.42829 * 8 6 4 36 36 H 0.96697 * 114.00152 * 82.50395 * 10 9 8 37 37 H 1.09004 * 109.47361 * 42.59664 * 11 9 8 38 38 H 1.08993 * 109.47501 * 162.59910 * 11 9 8 39 39 H 0.97002 * 119.99676 * 0.02562 * 12 11 9 40 40 H 1.08004 * 119.30990 * 359.96879 * 16 15 13 41 41 H 0.97000 * 124.94398 * 359.96827 * 19 18 17 42 42 H 1.08004 * 125.02257 * 180.02562 * 20 19 18 43 43 H 1.09002 * 109.46849 * 225.02372 * 22 21 20 44 44 H 0.96704 * 113.99637 * 299.99736 * 23 22 21 45 45 H 1.48497 * 109.99739 * 180.02562 * 24 22 21 46 46 H 1.48500 * 109.99807 * 301.32047 * 24 22 21 47 47 H 1.08999 * 109.47122 * 263.92102 * 27 26 25 48 48 H 1.08996 * 109.47131 * 23.92674 * 27 26 25 49 49 H 1.09001 * 109.47010 * 143.92866 * 27 26 25 50 50 H 1.09002 * 113.61871 * 334.56525 * 28 6 4 51 51 H 1.09003 * 113.61604 * 105.38894 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.4903 3.5733 -0.7737 8 6 3.9488 3.5930 1.3908 9 6 5.3314 4.1533 1.0103 10 8 5.2726 5.4241 0.3593 11 6 6.3465 4.1183 2.1544 12 7 6.0704 5.2148 3.0860 13 6 6.8422 5.3817 4.1781 14 8 7.7673 4.6220 4.3906 15 6 6.5642 6.4873 5.1168 16 6 5.5835 7.4411 4.8192 17 7 5.3212 8.4312 5.6408 18 6 5.9692 8.5792 6.7907 19 7 5.8847 9.5054 7.7989 20 6 6.7872 9.2107 8.7859 21 6 7.4764 8.1062 8.4613 22 6 8.5609 7.4516 9.2776 23 8 8.0475 6.2661 9.8883 24 14 9.1405 8.6300 10.5991 25 6 6.9719 7.6593 7.1606 26 6 7.2734 6.5934 6.3163 27 6 8.3343 5.5878 6.6830 28 6 5.4577 2.9684 0.0382 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.1877 4.3612 1.5269 35 1 3.9790 2.8757 2.2110 36 1 5.1931 6.1732 0.9654 37 1 6.2687 3.1666 2.6802 38 1 7.3528 4.2292 1.7509 39 1 5.3316 5.8203 2.9171 40 1 5.0314 7.3610 3.8945 41 1 5.2751 10.2598 7.8107 42 1 6.9239 9.7829 9.6917 43 1 9.3979 7.1929 8.6289 44 1 7.2989 6.4213 10.4805 45 1 10.2105 7.9964 11.4107 46 1 9.6474 9.8801 9.9781 47 1 9.2760 5.8636 6.2083 48 1 8.4633 5.5741 7.7652 49 1 8.0310 4.5984 6.3406 50 1 5.9013 2.0801 0.4879 51 1 5.9130 3.2318 -0.9165 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_12890568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:03:24 Heat of formation + Delta-G solvation = -99.707656 kcal Electronic energy + Delta-G solvation = -36164.762516 eV Core-core repulsion = 31225.594380 eV Total energy + Delta-G solvation = -4939.168137 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.172 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.85455 -42.13144 -41.13304 -40.21439 -38.73361 -37.78578 -37.70911 -36.09316 -35.57318 -34.89011 -32.69108 -31.99218 -31.48704 -29.49924 -28.77576 -27.01121 -26.62121 -26.11106 -24.61088 -24.00023 -23.59874 -21.97584 -21.91749 -20.77789 -20.64887 -19.46891 -19.23274 -18.73740 -17.96332 -17.77790 -17.55425 -17.37210 -17.23965 -17.01309 -16.77042 -16.38387 -16.32993 -16.03772 -15.63419 -15.50700 -15.26814 -15.14565 -14.80343 -14.67967 -14.54499 -14.21339 -14.07172 -13.97989 -13.80984 -13.77950 -13.62590 -13.50961 -13.29739 -13.20244 -13.12808 -12.97728 -12.76507 -12.57123 -12.31454 -12.26515 -12.04161 -11.73427 -11.58379 -11.46449 -11.19198 -11.15880 -10.90544 -10.59287 -10.29443 -10.20798 -9.62837 -9.11279 -4.98593 -0.36707 -0.07553 1.04434 1.35691 1.44222 1.59841 1.66472 1.74924 1.76878 1.92669 2.06339 2.74521 2.86643 3.11104 3.27971 3.39828 3.44753 3.45713 3.50008 3.59376 3.64237 3.73169 3.74706 3.90490 3.94979 4.02569 4.15374 4.20909 4.28430 4.30003 4.31392 4.33825 4.46036 4.57808 4.59048 4.64038 4.66682 4.70218 4.76069 4.80095 4.87075 4.87757 4.91616 4.98099 5.10320 5.12373 5.14685 5.22489 5.29499 5.39153 5.41085 5.73804 6.24181 6.33281 6.63098 6.64481 6.82999 6.88988 7.08453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.539 6.539 6 C -0.101 4.101 7 H 0.145 0.855 8 C -0.137 4.137 9 C 0.115 3.885 10 O -0.538 6.538 11 C 0.109 3.891 12 N -0.711 5.711 13 C 0.572 3.428 14 O -0.565 6.565 15 C -0.241 4.241 16 C 0.181 3.819 17 N -0.513 5.513 18 C 0.288 3.712 19 N -0.559 5.559 20 C 0.097 3.903 21 C -0.207 4.207 22 C -0.049 4.049 23 O -0.558 6.558 24 Si 0.804 3.196 25 C -0.167 4.167 26 C 0.060 3.940 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.394 0.606 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.412 0.588 40 H 0.199 0.801 41 H 0.440 0.560 42 H 0.231 0.769 43 H 0.093 0.907 44 H 0.395 0.605 45 H -0.306 1.306 46 H -0.281 1.281 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.103 0.897 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 6.972 4.136 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.314 3.686 5 O -0.429 6.429 6 C -0.120 4.120 7 H 0.163 0.837 8 C -0.174 4.174 9 C 0.073 3.927 10 O -0.346 6.346 11 C -0.015 4.015 12 N -0.365 5.365 13 C 0.361 3.639 14 O -0.445 6.445 15 C -0.249 4.249 16 C 0.012 3.988 17 N -0.226 5.226 18 C 0.055 3.945 19 N -0.166 5.166 20 C -0.030 4.030 21 C -0.215 4.215 22 C -0.158 4.158 23 O -0.366 6.366 24 Si 0.709 3.291 25 C -0.174 4.174 26 C 0.051 3.949 27 C -0.179 4.179 28 C -0.145 4.145 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.245 0.755 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.251 0.749 40 H 0.215 0.785 41 H 0.281 0.719 42 H 0.247 0.753 43 H 0.111 0.889 44 H 0.245 0.755 45 H -0.235 1.235 46 H -0.208 1.208 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.122 0.878 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.068 6.698 3.605 9.731 hybrid contribution 0.391 -0.594 -0.371 0.802 sum -5.678 6.104 3.235 8.942 Atomic orbital electron populations 1.21823 0.90618 1.04263 1.03785 1.23260 0.96997 0.79415 1.02424 1.86527 1.24273 1.33415 1.83390 1.24102 0.80538 0.93010 0.70962 1.90670 1.61168 1.44259 1.46819 1.22537 0.96896 0.89554 1.02965 0.83697 1.23688 0.98417 1.01085 0.94225 1.22119 0.93549 0.85523 0.91510 1.86579 1.96120 1.14761 1.37190 1.21864 0.99503 0.90805 0.89308 1.45550 1.34128 1.32985 1.23832 1.17986 0.81501 0.83493 0.80919 1.90770 1.31783 1.47301 1.74624 1.20467 1.05055 1.01319 0.98029 1.23001 0.92015 0.86418 0.97346 1.66521 1.28756 1.24385 1.02949 1.18781 0.94347 0.91166 0.90230 1.41629 1.34857 1.25148 1.14977 1.22397 0.89755 0.96744 0.94098 1.20799 1.04715 1.00078 0.95867 1.24716 0.95857 0.94007 1.01235 1.86476 1.54090 1.31334 1.64692 0.94084 0.83752 0.74195 0.77098 1.19773 1.01646 0.97805 0.98225 1.20052 0.92414 0.92072 0.90352 1.21088 0.96033 0.98033 1.02699 1.23059 0.93447 0.96823 1.01209 0.88597 0.91148 0.91229 0.91517 0.91443 0.86802 0.88707 0.75515 0.90481 0.91002 0.74917 0.78461 0.71899 0.75266 0.88910 0.75519 1.23461 1.20789 0.91148 0.89781 0.90103 0.87844 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.48 10.29 71.98 0.74 1.22 16 2 C 0.05 0.09 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.42 10.22 -51.40 -0.53 -1.95 16 4 C 0.47 2.28 7.48 71.24 0.53 2.82 16 5 O -0.54 -6.09 15.66 21.98 0.34 -5.74 16 6 C -0.10 0.16 4.19 -11.01 -0.05 0.11 16 7 H 0.15 -0.58 8.14 -2.39 -0.02 -0.60 16 8 C -0.14 0.75 7.03 31.18 0.22 0.97 16 9 C 0.11 -0.52 1.41 -10.21 -0.01 -0.53 16 10 O -0.54 2.86 13.41 -148.98 -2.00 0.87 16 11 C 0.11 -0.18 5.27 86.38 0.45 0.28 16 12 N -0.71 2.39 5.27 -466.14 -2.46 -0.06 16 13 C 0.57 2.78 7.72 86.74 0.67 3.45 16 14 O -0.56 -7.25 13.50 -3.96 -0.05 -7.30 16 15 C -0.24 -1.01 5.89 -19.99 -0.12 -1.13 16 16 C 0.18 -0.08 10.67 85.20 0.91 0.83 16 17 N -0.51 -1.45 10.37 -191.75 -1.99 -3.44 16 18 C 0.29 0.79 8.42 134.02 1.13 1.92 16 19 N -0.56 2.73 6.04 -192.25 -1.16 1.57 16 20 C 0.10 -0.72 10.44 82.97 0.87 0.14 16 21 C -0.21 0.18 5.57 -18.64 -0.10 0.07 16 22 C -0.05 0.05 1.88 71.24 0.13 0.19 16 23 O -0.56 0.08 11.64 -148.98 -1.73 -1.65 16 24 Si 0.80 -4.52 30.77 68.60 2.11 -2.41 16 25 C -0.17 -0.81 6.16 -20.19 -0.12 -0.94 16 26 C 0.06 0.44 5.98 -19.25 -0.12 0.33 16 27 C -0.12 -1.10 8.45 71.24 0.60 -0.50 16 28 C -0.11 0.09 6.79 31.12 0.21 0.30 16 29 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 33 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 34 H 0.11 -1.08 8.14 -2.39 -0.02 -1.10 16 35 H 0.09 -0.39 8.00 -2.39 -0.02 -0.41 16 36 H 0.39 -5.00 7.60 -74.06 -0.56 -5.56 16 37 H 0.08 0.05 8.06 -2.39 -0.02 0.03 16 38 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.41 -4.45 5.41 -92.71 -0.50 -4.95 16 40 H 0.20 -1.98 6.43 -2.91 -0.02 -2.00 16 41 H 0.44 -4.63 8.96 -92.71 -0.83 -5.46 16 42 H 0.23 -4.00 6.36 -2.91 -0.02 -4.01 16 43 H 0.09 0.25 7.15 -2.39 -0.02 0.23 16 44 H 0.39 -3.56 8.70 -74.05 -0.64 -4.20 16 45 H -0.31 -1.04 7.11 99.48 0.71 -0.34 16 46 H -0.28 0.34 7.11 99.48 0.71 1.04 16 47 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.08 0.70 4.80 -2.39 -0.01 0.69 16 49 H 0.08 0.99 5.96 -2.39 -0.01 0.97 16 50 H 0.10 0.15 7.41 -2.39 -0.02 0.14 16 51 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -33.25 417.14 -2.53 -35.78 By element: Atomic # 1 Polarization: -24.25 SS G_CDS: -1.46 Total: -25.71 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 6.39 Total: 10.06 kcal Atomic # 7 Polarization: 3.67 SS G_CDS: -5.60 Total: -1.94 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -3.97 Total: -15.78 kcal Atomic # 14 Polarization: -4.52 SS G_CDS: 2.11 Total: -2.41 kcal Total: -33.25 -2.53 -35.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_12890568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.928 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds