Wall clock time and date at job start Sun Mar 7 2021 07:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47071 * 2 1 4 4 C 1.34234 * 116.99792 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00241 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99981 * 179.97438 * 4 3 2 7 7 H 1.09003 * 112.84565 * 311.19342 * 6 4 3 8 8 C 1.53951 * 113.66795 * 82.43583 * 6 4 3 9 9 C 1.53778 * 87.01983 * 139.93468 * 8 6 4 10 10 O 1.42900 * 113.61371 * 89.23051 * 9 8 6 11 11 C 1.53004 * 113.61431 * 220.04853 * 9 8 6 12 12 N 1.46499 * 109.47198 * 284.13666 * 11 9 8 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 9 14 14 O 1.21563 * 120.00283 * 359.72077 * 13 12 11 15 15 C 1.47716 * 119.99706 * 179.72381 * 13 12 11 16 16 C 1.39708 * 120.02590 * 359.72681 * 15 13 12 17 17 C 1.37665 * 119.97641 * 179.72057 * 16 15 13 18 18 C 1.39503 * 120.02463 * 0.54905 * 17 16 15 19 19 C 1.48280 * 119.98096 * 179.74658 * 18 17 16 20 20 C 1.39398 * 120.12888 * 179.70467 * 19 18 17 21 21 C 1.38005 * 119.86617 * 179.76776 * 20 19 18 22 22 C 1.38329 * 120.12794 * 0.50483 * 21 20 19 23 23 C 1.50707 * 119.87001 * 179.72363 * 22 21 20 24 24 O 1.42902 * 109.47044 * 245.02317 * 23 22 21 25 25 Si 1.86297 * 109.46991 * 5.02237 * 23 22 21 26 26 C 1.38329 * 120.25874 * 359.74760 * 22 21 20 27 27 C 1.38004 * 120.12669 * 359.97438 * 26 22 21 28 28 C 1.39506 * 120.04620 * 359.72525 * 18 17 16 29 29 C 1.37662 * 120.02766 * 359.97438 * 28 18 17 30 30 C 1.53778 * 87.17330 * 334.63813 * 9 8 6 31 31 H 1.09000 * 109.47072 * 60.00434 * 1 2 3 32 32 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47052 * 300.00238 * 1 2 3 34 34 H 1.08996 * 109.47694 * 239.99427 * 2 1 3 35 35 H 1.09000 * 109.47072 * 119.99566 * 2 1 3 36 36 H 1.09005 * 113.61244 * 25.41612 * 8 6 4 37 37 H 1.09002 * 113.67032 * 254.46470 * 8 6 4 38 38 H 0.96701 * 113.99761 * 80.86967 * 10 9 8 39 39 H 1.09009 * 109.46730 * 164.13453 * 11 9 8 40 40 H 1.08998 * 109.46846 * 44.13997 * 11 9 8 41 41 H 0.97001 * 119.99790 * 359.97438 * 12 11 9 42 42 H 1.08003 * 120.01062 * 359.97438 * 16 15 13 43 43 H 1.08000 * 119.99225 * 180.29742 * 17 16 15 44 44 H 1.08000 * 120.06437 * 0.02562 * 20 19 18 45 45 H 1.08003 * 119.93212 * 180.22977 * 21 20 19 46 46 H 1.08999 * 109.46937 * 125.02588 * 23 22 21 47 47 H 0.96700 * 114.00010 * 59.99456 * 24 23 22 48 48 H 1.48491 * 110.00226 * 58.68300 * 25 23 22 49 49 H 1.48500 * 110.00027 * 180.02562 * 25 23 22 50 50 H 1.08007 * 119.93505 * 179.97438 * 26 22 21 51 51 H 1.08004 * 120.06379 * 179.97438 * 27 26 22 52 52 H 1.08001 * 119.98498 * 179.97438 * 28 18 17 53 53 H 1.07993 * 120.01668 * 180.02562 * 29 28 18 54 54 H 1.09003 * 113.61364 * 139.93273 * 30 9 8 55 55 H 1.09000 * 113.62038 * 270.75811 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.4709 3.5811 -0.7571 8 6 3.9860 3.5798 1.3964 9 6 5.3568 4.1428 0.9855 10 8 5.2837 5.4203 0.3495 11 6 6.3993 4.0949 2.1044 12 7 6.1253 5.1591 3.0731 13 6 6.9234 5.3136 4.1482 14 8 7.8676 4.5667 4.3167 15 6 6.6507 6.3906 5.1217 16 6 5.5691 7.2528 4.9256 17 6 5.3124 8.2526 5.8366 18 6 6.1387 8.4120 6.9492 19 6 5.8647 9.4927 7.9268 20 6 6.6847 9.6510 9.0430 21 6 6.4276 10.6616 9.9469 22 6 5.3524 11.5100 9.7525 23 6 5.0733 12.6078 10.7466 24 8 3.8218 12.3604 11.3905 25 14 6.4303 12.6501 12.0223 26 6 4.5322 11.3544 8.6496 27 6 4.7829 10.3510 7.7359 28 6 7.2224 7.5552 7.1430 29 6 7.4773 6.5509 6.2366 30 6 5.4583 2.9681 -0.0016 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 4.0374 2.8544 2.2084 37 1 3.2301 4.3477 1.5607 38 1 5.1963 6.1614 0.9646 39 1 7.3937 4.2363 1.6807 40 1 6.3516 3.1274 2.6042 41 1 5.3721 5.7554 2.9384 42 1 4.9321 7.1326 4.0618 43 1 4.4735 8.9163 5.6878 44 1 7.5220 8.9867 9.1977 45 1 7.0644 10.7875 10.8100 46 1 5.0320 13.5656 10.2281 47 1 3.7863 11.5230 11.8727 48 1 7.7412 12.8750 11.3621 49 1 6.1665 13.7282 13.0089 50 1 3.6939 12.0196 8.5032 51 1 4.1416 10.2301 6.8754 52 1 7.8617 7.6798 8.0045 53 1 8.3160 5.8875 6.3870 54 1 5.8891 3.2428 -0.9645 55 1 5.9143 2.0756 0.4269 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_13158362.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:03:29 Heat of formation + Delta-G solvation = -117.486698 kcal Electronic energy + Delta-G solvation = -37200.288277 eV Core-core repulsion = 32134.748725 eV Total energy + Delta-G solvation = -5065.539553 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.181 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.16703 -41.45791 -40.81421 -40.23033 -39.16759 -37.77397 -37.50174 -36.01937 -35.49664 -34.01819 -32.69427 -32.58294 -31.59969 -31.11646 -29.48499 -27.19152 -26.93759 -26.14671 -24.64883 -24.34257 -23.70082 -22.59224 -22.32264 -21.93224 -21.34041 -20.78051 -19.69458 -18.84399 -18.51078 -17.83046 -17.79716 -17.61146 -17.38298 -17.14695 -16.78133 -16.58639 -16.33090 -16.12774 -15.97044 -15.79810 -15.40260 -15.26840 -15.05772 -14.97827 -14.88476 -14.77949 -14.57000 -14.35618 -14.16875 -14.15252 -14.01207 -13.79356 -13.58630 -13.50913 -13.30804 -13.14690 -12.98324 -12.78050 -12.72681 -12.57481 -12.53037 -12.29381 -12.11237 -11.93726 -11.76884 -11.59219 -11.58440 -11.49641 -11.15089 -10.92133 -10.76996 -10.41828 -10.30134 -10.04925 -9.94450 -9.06680 -5.01219 -0.68659 0.36492 0.41657 0.50517 1.03674 1.30713 1.59621 1.62349 1.76634 1.92398 1.95860 2.61100 2.84637 3.02302 3.10089 3.32942 3.40439 3.43872 3.46302 3.55319 3.64862 3.68351 3.80362 3.87996 3.90510 3.95119 4.02472 4.02678 4.06602 4.19682 4.27908 4.29921 4.30151 4.30689 4.38258 4.48310 4.57563 4.61841 4.65688 4.67292 4.70334 4.79687 4.85483 4.87889 4.89739 4.90488 4.93021 5.09689 5.09980 5.12336 5.14167 5.17344 5.22347 5.27505 5.40957 5.42544 5.51338 5.66675 5.80653 5.94424 6.32431 6.62401 6.63194 6.76082 7.04980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.539 6.539 6 C -0.100 4.100 7 H 0.146 0.854 8 C -0.136 4.136 9 C 0.115 3.885 10 O -0.538 6.538 11 C 0.106 3.894 12 N -0.709 5.709 13 C 0.559 3.441 14 O -0.579 6.579 15 C -0.152 4.152 16 C -0.072 4.072 17 C -0.120 4.120 18 C -0.022 4.022 19 C -0.060 4.060 20 C -0.107 4.107 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.073 4.073 24 O -0.555 6.555 25 Si 0.770 3.230 26 C -0.103 4.103 27 C -0.107 4.107 28 C -0.123 4.123 29 C -0.071 4.071 30 C -0.108 4.108 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.394 0.606 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.414 0.586 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.146 0.854 45 H 0.145 0.855 46 H 0.107 0.893 47 H 0.395 0.605 48 H -0.287 1.287 49 H -0.301 1.301 50 H 0.131 0.869 51 H 0.148 0.852 52 H 0.147 0.853 53 H 0.126 0.874 54 H 0.093 0.907 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 2.282 1.256 6.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.314 3.686 5 O -0.429 6.429 6 C -0.119 4.119 7 H 0.163 0.837 8 C -0.173 4.173 9 C 0.073 3.927 10 O -0.346 6.346 11 C -0.018 4.018 12 N -0.363 5.363 13 C 0.348 3.652 14 O -0.460 6.460 15 C -0.155 4.155 16 C -0.090 4.090 17 C -0.137 4.137 18 C -0.022 4.022 19 C -0.060 4.060 20 C -0.125 4.125 21 C -0.136 4.136 22 C -0.120 4.120 23 C -0.183 4.183 24 O -0.363 6.363 25 Si 0.677 3.323 26 C -0.121 4.121 27 C -0.124 4.124 28 C -0.141 4.141 29 C -0.090 4.090 30 C -0.146 4.146 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.134 0.866 38 H 0.245 0.755 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.253 0.747 42 H 0.180 0.820 43 H 0.175 0.825 44 H 0.164 0.836 45 H 0.162 0.838 46 H 0.124 0.876 47 H 0.245 0.755 48 H -0.214 1.214 49 H -0.230 1.230 50 H 0.149 0.851 51 H 0.165 0.835 52 H 0.165 0.835 53 H 0.144 0.856 54 H 0.111 0.889 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.560 2.096 0.909 5.100 hybrid contribution -0.199 0.358 -0.183 0.449 sum -4.759 2.454 0.726 5.404 Atomic orbital electron populations 1.21823 0.90614 1.04259 1.03797 1.23256 0.96992 0.79403 1.02421 1.86527 1.24241 1.33416 1.83382 1.24093 0.80553 0.93000 0.70982 1.90673 1.61178 1.44258 1.46805 1.22561 0.96819 0.89646 1.02896 0.83669 1.23685 0.98304 1.01191 0.94143 1.22076 0.93439 0.85427 0.91756 1.86584 1.95999 1.14794 1.37242 1.21882 0.99376 0.91606 0.88900 1.45590 1.32104 1.34884 1.23757 1.18550 0.81527 0.83727 0.81424 1.90796 1.31481 1.47203 1.76505 1.19941 0.99902 0.98441 0.97239 1.21484 0.95035 0.92902 0.99606 1.21487 1.00171 0.98776 0.93304 1.19160 0.94855 0.93905 0.94320 1.18943 0.96565 0.95567 0.94953 1.21493 0.99593 0.98063 0.93363 1.21132 0.97270 0.95258 0.99976 1.20523 0.96433 0.97803 0.97238 1.25138 0.95700 0.98162 0.99293 1.86475 1.33612 1.45601 1.70611 0.93790 0.73720 0.86727 0.78113 1.21112 0.99294 0.98177 0.93510 1.21526 0.96820 0.94248 0.99847 1.21380 0.97876 0.94680 1.00121 1.21259 0.98175 0.96911 0.92653 1.23060 0.93464 0.96927 1.01175 0.91231 0.88624 0.91117 0.91545 0.91429 0.88708 0.86638 0.75509 0.91186 0.90583 0.74672 0.82003 0.82521 0.83610 0.83752 0.87589 0.75479 1.21415 1.22964 0.85091 0.83463 0.83516 0.85566 0.88859 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.58 10.29 71.98 0.74 1.32 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.14 10.22 -51.46 -0.53 -1.66 16 4 C 0.47 1.92 7.49 71.24 0.53 2.45 16 5 O -0.54 -5.71 15.65 21.97 0.34 -5.37 16 6 C -0.10 0.24 4.20 -10.96 -0.05 0.20 16 7 H 0.15 -0.72 8.14 -2.39 -0.02 -0.74 16 8 C -0.14 0.89 7.03 31.18 0.22 1.11 16 9 C 0.11 -0.60 1.38 -10.27 -0.01 -0.62 16 10 O -0.54 3.32 13.41 -148.98 -2.00 1.33 16 11 C 0.11 -0.22 5.24 86.38 0.45 0.23 16 12 N -0.71 3.09 5.28 -466.09 -2.46 0.63 16 13 C 0.56 1.95 7.77 86.75 0.67 2.63 16 14 O -0.58 -7.60 16.33 -3.91 -0.06 -7.67 16 15 C -0.15 -0.03 5.88 -20.06 -0.12 -0.15 16 16 C -0.07 0.46 9.52 22.49 0.21 0.67 16 17 C -0.12 0.68 9.41 22.44 0.21 0.89 16 18 C -0.02 0.05 5.88 -19.99 -0.12 -0.07 16 19 C -0.06 0.13 5.88 -20.05 -0.12 0.01 16 20 C -0.11 0.33 9.43 22.49 0.21 0.54 16 21 C -0.12 0.40 8.65 22.24 0.19 0.59 16 22 C -0.12 0.22 5.36 -19.82 -0.11 0.12 16 23 C -0.07 0.13 2.80 71.24 0.20 0.33 16 24 O -0.55 0.58 12.83 -148.98 -1.91 -1.34 16 25 Si 0.77 -2.23 29.79 68.60 2.04 -0.19 16 26 C -0.10 0.18 9.67 22.24 0.21 0.39 16 27 C -0.11 0.34 9.43 22.49 0.21 0.55 16 28 C -0.12 0.15 9.41 22.44 0.21 0.36 16 29 C -0.07 -0.14 9.58 22.49 0.22 0.08 16 30 C -0.11 0.16 6.80 31.12 0.21 0.37 16 31 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H 0.07 -0.30 8.14 -2.39 -0.02 -0.31 16 34 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 35 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 36 H 0.09 -0.48 8.01 -2.38 -0.02 -0.50 16 37 H 0.12 -1.27 8.14 -2.39 -0.02 -1.29 16 38 H 0.39 -5.42 7.72 -74.06 -0.57 -5.99 16 39 H 0.07 0.10 8.14 -2.38 -0.02 0.08 16 40 H 0.08 0.03 8.09 -2.39 -0.02 0.01 16 41 H 0.41 -5.03 5.43 -92.71 -0.50 -5.54 16 42 H 0.16 -2.34 6.39 -2.91 -0.02 -2.36 16 43 H 0.16 -1.67 6.19 -2.91 -0.02 -1.69 16 44 H 0.15 -0.97 6.19 -2.91 -0.02 -0.99 16 45 H 0.15 -1.05 4.89 -2.91 -0.01 -1.07 16 46 H 0.11 -0.06 7.96 -2.39 -0.02 -0.08 16 47 H 0.40 -3.54 8.70 -74.06 -0.64 -4.19 16 48 H -0.29 -0.59 7.11 99.48 0.71 0.12 16 49 H -0.30 -1.51 7.11 99.48 0.71 -0.81 16 50 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 51 H 0.15 -1.16 6.19 -2.91 -0.02 -1.18 16 52 H 0.15 -0.71 6.19 -2.91 -0.02 -0.73 16 53 H 0.13 0.49 7.64 -2.91 -0.02 0.47 16 54 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 55 H 0.10 0.10 7.40 -2.39 -0.02 0.08 16 Total: 0.00 -29.10 453.29 -0.64 -29.74 By element: Atomic # 1 Polarization: -27.28 SS G_CDS: -0.71 Total: -27.98 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 4.64 Total: 12.51 kcal Atomic # 7 Polarization: 3.09 SS G_CDS: -2.46 Total: 0.63 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -4.16 Total: -14.71 kcal Atomic # 14 Polarization: -2.23 SS G_CDS: 2.04 Total: -0.19 kcal Total: -29.10 -0.64 -29.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_13158362.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.749 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds