Wall clock time and date at job start Sun Mar 7 2021 07:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45201 * 109.46746 * 2 1 4 4 C 1.34235 * 116.99704 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99996 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99722 * 180.02562 * 4 3 2 7 7 H 1.08997 * 112.85047 * 311.19488 * 6 4 3 8 8 C 1.53777 * 113.69352 * 82.46556 * 6 4 3 9 9 C 1.53784 * 87.08441 * 139.99299 * 8 6 4 10 10 O 1.42892 * 113.69257 * 89.12502 * 9 8 6 11 11 C 1.52996 * 113.61315 * 220.02408 * 9 8 6 12 12 N 1.46504 * 109.46681 * 282.48944 * 11 9 8 13 13 C 1.34777 * 119.99854 * 179.97438 * 12 11 9 14 14 O 1.21653 * 119.99992 * 0.02562 * 13 12 11 15 15 C 1.47058 * 119.99966 * 180.27718 * 13 12 11 16 16 C 1.35863 * 125.42589 * 179.41864 * 15 13 12 17 17 C 1.41593 * 107.72949 * 179.90388 * 16 15 13 18 18 C 1.40063 * 133.38533 * 180.12052 * 17 16 15 19 19 C 1.36470 * 119.83292 * 180.26517 * 18 17 16 20 20 C 1.38898 * 120.61321 * 359.97115 * 19 18 17 21 21 C 1.50702 * 119.67561 * 180.02562 * 20 19 18 22 22 O 1.42900 * 109.46986 * 245.00332 * 21 20 19 23 23 Si 1.86304 * 109.47147 * 5.00083 * 21 20 19 24 24 C 1.37705 * 120.65121 * 0.05129 * 20 19 18 25 25 C 1.39186 * 119.80643 * 359.95313 * 24 20 19 26 26 N 1.37494 * 133.18267 * 180.02562 * 25 24 20 27 27 C 1.53781 * 113.61342 * 180.02562 * 6 4 3 28 28 H 1.08998 * 109.47003 * 299.99889 * 1 2 3 29 29 H 1.08998 * 109.46939 * 60.00414 * 1 2 3 30 30 H 1.09002 * 109.46626 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47003 * 240.00111 * 2 1 3 32 32 H 1.08998 * 109.46939 * 119.99586 * 2 1 3 33 33 H 1.08995 * 113.61857 * 25.44147 * 8 6 4 34 34 H 1.09004 * 113.61463 * 254.54138 * 8 6 4 35 35 H 0.96701 * 114.00200 * 80.93750 * 10 9 8 36 36 H 1.08998 * 109.47328 * 162.49276 * 11 9 8 37 37 H 1.08997 * 109.47540 * 42.49023 * 11 9 8 38 38 H 0.97000 * 120.00410 * 0.02562 * 12 11 9 39 39 H 1.08002 * 126.13566 * 0.04158 * 16 15 13 40 40 H 1.08005 * 120.08128 * 0.27804 * 18 17 16 41 41 H 1.08001 * 119.69468 * 180.02562 * 19 18 17 42 42 H 1.08997 * 109.47509 * 125.00502 * 21 20 19 43 43 H 0.96700 * 114.00159 * 59.99850 * 22 21 20 44 44 H 1.48499 * 110.00198 * 180.02562 * 23 21 20 45 45 H 1.48501 * 109.99895 * 301.31976 * 23 21 20 46 46 H 1.08001 * 120.09725 * 179.97438 * 24 20 19 47 47 H 0.96996 * 125.61033 * 359.97427 * 26 25 24 48 48 H 1.09004 * 113.61855 * 105.38414 * 27 6 4 49 49 H 1.08998 * 113.68839 * 334.49285 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 1 3.4713 3.5817 -0.7546 8 6 3.9856 3.5787 1.3974 9 6 5.3560 4.1439 0.9878 10 8 5.2832 5.4208 0.3507 11 6 6.3977 4.0969 2.1074 12 7 6.1447 5.1847 3.0556 13 6 6.9422 5.3403 4.1309 14 8 7.8724 4.5779 4.3138 15 6 6.6847 6.4285 5.0860 16 6 7.4084 6.6791 6.2082 17 6 6.8385 7.8077 6.8457 18 6 7.1528 8.5136 8.0139 19 6 6.3952 9.5869 8.3831 20 6 5.3130 9.9882 7.6104 21 6 4.4911 11.1769 8.0377 22 8 3.1658 10.7491 8.3583 23 14 5.2693 11.9637 9.5364 24 6 4.9835 9.3104 6.4579 25 6 5.7411 8.2124 6.0604 26 7 5.6644 7.3548 4.9885 27 6 5.4581 2.9682 0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0375 2.8532 2.2091 34 1 3.2284 4.3454 1.5614 35 1 5.1953 6.1625 0.9649 36 1 7.3944 4.2108 1.6813 37 1 6.3313 3.1403 2.6256 38 1 5.4029 5.7924 2.9100 39 1 8.2660 6.1194 6.5512 40 1 7.9928 8.2093 8.6208 41 1 6.6398 10.1299 9.2841 42 1 4.4520 11.9026 7.2253 43 1 3.1243 10.1010 9.0748 44 1 4.4678 13.1368 9.9682 45 1 5.3574 10.9750 10.6410 46 1 4.1400 9.6299 5.8640 47 1 5.0028 7.3937 4.2803 48 1 5.8894 3.2423 -0.9617 49 1 5.9140 2.0761 0.4305 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_13158378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:03:34 Heat of formation + Delta-G solvation = -110.745551 kcal Electronic energy + Delta-G solvation = -33133.746548 eV Core-core repulsion = 28415.063303 eV Total energy + Delta-G solvation = -4718.683246 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.161 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.73850 -42.15146 -40.96994 -40.10282 -38.98784 -37.80397 -36.97362 -36.09348 -35.55006 -33.30151 -32.71280 -31.43438 -30.42321 -29.75158 -27.25740 -26.95389 -26.05264 -24.34375 -23.72895 -23.10038 -22.05584 -21.94936 -21.36682 -20.82283 -19.94897 -18.88600 -18.51699 -17.94103 -17.86825 -17.78077 -17.42213 -16.94199 -16.88961 -16.69077 -16.20241 -16.17700 -15.74141 -15.54364 -15.43616 -15.12828 -14.98107 -14.81095 -14.69890 -14.52269 -14.42548 -14.23837 -14.03376 -13.82850 -13.55882 -13.31969 -13.17718 -13.01179 -12.82518 -12.60220 -12.54601 -12.51876 -12.33611 -12.07650 -11.85356 -11.61564 -11.59385 -11.53207 -11.38453 -10.98517 -10.96452 -10.59265 -10.46243 -9.34067 -8.83237 -4.85761 -0.38856 0.53180 0.92240 1.01020 1.35163 1.54843 1.65431 1.68724 1.87398 2.02105 2.13297 2.76689 2.79711 3.05493 3.28624 3.37574 3.40665 3.44949 3.57887 3.67495 3.74514 3.85688 3.92744 4.00041 4.04187 4.15820 4.24941 4.26720 4.27851 4.29506 4.45605 4.52195 4.54218 4.59280 4.64503 4.68653 4.75978 4.80788 4.85256 4.86925 4.88694 4.99443 5.00812 5.07257 5.09903 5.31097 5.38504 5.40909 5.53965 5.57299 5.97025 6.14222 6.40724 6.51862 6.55785 6.60202 6.85432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.469 3.531 5 O -0.538 6.538 6 C -0.101 4.101 7 H 0.145 0.855 8 C -0.137 4.137 9 C 0.114 3.886 10 O -0.537 6.537 11 C 0.107 3.893 12 N -0.710 5.710 13 C 0.589 3.411 14 O -0.557 6.557 15 C 0.012 3.988 16 C -0.117 4.117 17 C -0.135 4.135 18 C -0.059 4.059 19 C -0.149 4.149 20 C -0.086 4.086 21 C -0.078 4.078 22 O -0.548 6.548 23 Si 0.765 3.235 24 C -0.107 4.107 25 C 0.110 3.890 26 N -0.562 5.562 27 C -0.107 4.107 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.392 0.608 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.411 0.589 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.129 0.871 43 H 0.386 0.614 44 H -0.306 1.306 45 H -0.283 1.283 46 H 0.139 0.861 47 H 0.433 0.567 48 H 0.094 0.906 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.562 4.052 -0.552 5.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.277 6.277 4 C 0.314 3.686 5 O -0.428 6.428 6 C -0.120 4.120 7 H 0.162 0.838 8 C -0.175 4.175 9 C 0.072 3.928 10 O -0.345 6.345 11 C -0.017 4.017 12 N -0.363 5.363 13 C 0.376 3.624 14 O -0.435 6.435 15 C -0.098 4.098 16 C -0.144 4.144 17 C -0.140 4.140 18 C -0.078 4.078 19 C -0.168 4.168 20 C -0.088 4.088 21 C -0.187 4.187 22 O -0.356 6.356 23 Si 0.672 3.328 24 C -0.127 4.127 25 C -0.001 4.001 26 N -0.168 5.168 27 C -0.145 4.145 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.131 0.869 35 H 0.243 0.757 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.248 0.752 39 H 0.172 0.828 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.147 0.853 43 H 0.236 0.764 44 H -0.235 1.235 45 H -0.210 1.210 46 H 0.156 0.844 47 H 0.274 0.726 48 H 0.112 0.888 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.001 3.377 -0.801 4.589 hybrid contribution -1.381 -0.803 0.251 1.617 sum -4.382 2.574 -0.550 5.112 Atomic orbital electron populations 1.21826 0.90657 1.04277 1.03761 1.23260 0.96967 0.79381 1.02462 1.86528 1.24296 1.33450 1.83388 1.24086 0.80543 0.93006 0.71013 1.90675 1.61151 1.44230 1.46757 1.22528 0.96981 0.89659 1.02818 0.83754 1.23666 0.98348 1.01182 0.94278 1.22100 0.93371 0.85455 0.91838 1.86603 1.95986 1.14761 1.37142 1.21954 0.99804 0.90863 0.89092 1.45544 1.32770 1.33445 1.24556 1.17244 0.81857 0.82771 0.80511 1.90889 1.31690 1.45455 1.75434 1.19865 0.95018 0.95351 0.99597 1.21108 1.01230 0.97753 0.94351 1.18433 0.98422 0.98806 0.98297 1.20614 0.99333 0.93811 0.94036 1.20718 0.96435 0.98505 1.01115 1.20061 0.96480 0.97424 0.94837 1.25175 0.85470 0.97427 1.10619 1.86575 1.26252 1.64422 1.58324 0.93931 0.86944 0.76992 0.74956 1.20014 1.00362 0.94281 0.98072 1.18418 0.97927 0.94230 0.89516 1.41728 1.27235 1.24910 1.22942 1.23073 0.93330 0.96886 1.01202 0.91189 0.91233 0.88589 0.91475 0.91404 0.88617 0.86918 0.75691 0.90536 0.90059 0.75227 0.82850 0.83736 0.83926 0.85326 0.76450 1.23472 1.21012 0.84363 0.72637 0.88763 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.57 10.29 71.98 0.74 1.31 16 2 C 0.05 0.04 6.19 71.98 0.45 0.49 16 3 O -0.36 -1.09 10.22 -51.46 -0.53 -1.62 16 4 C 0.47 1.74 7.49 71.23 0.53 2.27 16 5 O -0.54 -5.44 15.65 21.96 0.34 -5.10 16 6 C -0.10 0.30 4.19 -11.02 -0.05 0.25 16 7 H 0.14 -0.76 8.14 -2.39 -0.02 -0.78 16 8 C -0.14 0.98 7.02 31.12 0.22 1.20 16 9 C 0.11 -0.73 1.41 -10.25 -0.01 -0.74 16 10 O -0.54 3.83 13.41 -148.98 -2.00 1.83 16 11 C 0.11 -0.41 5.26 86.38 0.45 0.05 16 12 N -0.71 4.23 5.33 -466.72 -2.49 1.75 16 13 C 0.59 1.20 7.80 86.56 0.68 1.88 16 14 O -0.56 -6.19 16.84 -4.20 -0.07 -6.26 16 15 C 0.01 0.01 6.97 39.91 0.28 0.28 16 16 C -0.12 -0.37 10.53 22.55 0.24 -0.13 16 17 C -0.14 -0.25 6.16 -21.36 -0.13 -0.39 16 18 C -0.06 0.04 10.06 22.30 0.22 0.27 16 19 C -0.15 0.36 8.59 22.01 0.19 0.55 16 20 C -0.09 0.20 5.36 -19.83 -0.11 0.09 16 21 C -0.08 0.25 2.79 71.24 0.20 0.45 16 22 O -0.55 0.03 12.83 -148.98 -1.91 -1.88 16 23 Si 0.77 -2.67 29.85 68.60 2.05 -0.62 16 24 C -0.11 0.22 9.69 22.37 0.22 0.44 16 25 C 0.11 -0.07 7.25 39.13 0.28 0.21 16 26 N -0.56 2.68 6.07 -177.18 -1.08 1.60 16 27 C -0.11 0.27 6.80 31.14 0.21 0.48 16 28 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 32 H 0.07 0.08 8.13 -2.39 -0.02 0.06 16 33 H 0.10 -0.56 7.99 -2.39 -0.02 -0.57 16 34 H 0.11 -1.27 8.14 -2.39 -0.02 -1.28 16 35 H 0.39 -5.77 7.62 -74.06 -0.56 -6.34 16 36 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.08 -0.13 8.05 -2.39 -0.02 -0.15 16 38 H 0.41 -5.53 6.38 -92.71 -0.59 -6.12 16 39 H 0.15 0.49 8.06 -2.91 -0.02 0.47 16 40 H 0.14 -0.61 8.06 -2.91 -0.02 -0.64 16 41 H 0.14 -0.83 4.78 -2.91 -0.01 -0.84 16 42 H 0.13 -0.68 7.96 -2.39 -0.02 -0.69 16 43 H 0.39 -1.98 8.70 -74.06 -0.64 -2.62 16 44 H -0.31 -1.41 7.11 99.48 0.71 -0.71 16 45 H -0.28 -0.12 7.00 99.48 0.70 0.58 16 46 H 0.14 -0.66 8.06 -2.91 -0.02 -0.68 16 47 H 0.43 -5.35 8.12 -92.71 -0.75 -6.10 16 48 H 0.09 -0.21 8.14 -2.38 -0.02 -0.23 16 49 H 0.11 -0.02 7.40 -2.39 -0.02 -0.04 16 Total: 0.00 -26.71 412.57 -2.55 -29.27 By element: Atomic # 1 Polarization: -26.44 SS G_CDS: -1.48 Total: -27.93 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 4.61 Total: 8.96 kcal Atomic # 7 Polarization: 6.91 SS G_CDS: -3.56 Total: 3.35 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -4.16 Total: -13.02 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.05 Total: -0.62 kcal Total: -26.71 -2.55 -29.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_13158378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.480 kcal (2) G-P(sol) polarization free energy of solvation -26.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds