Wall clock time and date at job start Sun Mar 7 2021 07:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45208 * 109.46886 * 2 1 4 4 C 1.34231 * 116.99608 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00215 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99596 * 180.02562 * 4 3 2 7 7 H 1.09005 * 112.85137 * 48.80463 * 6 4 3 8 8 C 1.53781 * 113.61337 * 179.97438 * 6 4 3 9 9 C 1.53774 * 87.08104 * 139.98360 * 8 6 4 10 10 O 1.42896 * 113.61883 * 89.20178 * 9 8 6 11 11 C 1.53003 * 113.61391 * 220.02039 * 9 8 6 12 12 N 1.46495 * 109.47237 * 179.97438 * 11 9 8 13 13 C 1.34784 * 120.00000 * 180.02562 * 12 11 9 14 14 O 1.21583 * 119.99874 * 359.97438 * 13 12 11 15 15 C 1.47560 * 119.99990 * 180.02562 * 13 12 11 16 16 C 1.40213 * 120.12298 * 180.24916 * 15 13 12 17 17 O 1.35652 * 120.00136 * 0.02562 * 16 15 13 18 18 C 1.38816 * 119.99726 * 180.27322 * 16 15 13 19 19 C 1.37769 * 120.24241 * 359.47091 * 18 16 15 20 20 C 1.39845 * 120.24593 * 0.26095 * 19 18 16 21 21 C 1.47822 * 120.00013 * 179.97438 * 20 19 18 22 22 C 1.35934 * 125.92775 * 359.97438 * 21 20 19 23 23 C 1.40970 * 106.74231 * 179.97438 * 22 21 20 24 24 C 1.34707 * 107.02728 * 359.97438 * 23 22 21 25 25 C 1.50703 * 125.66603 * 180.02562 * 24 23 22 26 26 O 1.42901 * 109.47331 * 64.99863 * 25 24 23 27 27 Si 1.86307 * 109.47033 * 185.00051 * 25 24 23 28 28 O 1.34344 * 108.67070 * 359.76030 * 24 23 22 29 29 C 1.39170 * 120.00270 * 0.02562 * 20 19 18 30 30 C 1.53778 * 113.61483 * 277.49775 * 6 4 3 31 31 H 1.09003 * 109.47145 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47081 * 300.00101 * 1 2 3 33 33 H 1.09004 * 109.47142 * 60.00283 * 1 2 3 34 34 H 1.09002 * 109.47276 * 240.00173 * 2 1 3 35 35 H 1.09004 * 109.47142 * 119.99716 * 2 1 3 36 36 H 1.08998 * 113.61449 * 25.43071 * 8 6 4 37 37 H 1.09006 * 113.61389 * 254.52651 * 8 6 4 38 38 H 0.96702 * 114.00348 * 181.52758 * 10 9 8 39 39 H 1.09002 * 109.47113 * 59.99902 * 11 9 8 40 40 H 1.09003 * 109.47017 * 299.99958 * 11 9 8 41 41 H 0.97000 * 120.00236 * 359.97438 * 12 11 9 42 42 H 0.96700 * 113.99572 * 270.25222 * 17 16 15 43 43 H 1.08002 * 119.88141 * 179.75476 * 18 16 15 44 44 H 1.08003 * 119.87978 * 180.23271 * 19 18 16 45 45 H 1.07998 * 126.63308 * 359.95755 * 22 21 20 46 46 H 1.07997 * 126.48890 * 179.97438 * 23 22 21 47 47 H 1.09003 * 109.46659 * 304.99686 * 25 24 23 48 48 H 0.96703 * 113.99481 * 60.00057 * 26 25 24 49 49 H 1.48499 * 109.99675 * 179.97438 * 27 25 24 50 50 H 1.48492 * 109.99992 * 301.31559 * 27 25 24 51 51 H 1.07996 * 120.12350 * 180.02562 * 29 20 19 52 52 H 1.08999 * 113.61503 * 105.47220 * 30 6 4 53 53 H 1.09004 * 113.61375 * 334.56510 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 1 3.4708 3.5813 0.7570 8 6 5.4582 2.9682 0.0024 9 6 5.3571 4.1427 -0.9851 10 8 5.2837 5.4204 -0.3494 11 6 6.4002 4.0946 -2.1034 12 7 6.2220 5.2492 -2.9873 13 6 7.0340 5.4159 -4.0502 14 8 7.9145 4.6082 -4.2751 15 6 6.8549 6.5792 -4.9402 16 6 7.6947 6.7523 -6.0495 17 8 8.6737 5.8492 -6.3066 18 6 7.5276 7.8507 -6.8818 19 6 6.5312 8.7678 -6.6287 20 6 5.6842 8.6021 -5.5283 21 6 4.6173 9.5899 -5.2615 22 6 4.3530 10.6983 -6.0027 23 6 3.2606 11.3454 -5.3902 24 6 2.9158 10.6073 -4.3174 25 6 1.7943 10.9187 -3.3602 26 8 0.5445 10.8393 -4.0486 27 14 1.8120 9.6883 -1.9613 28 8 3.7341 9.5442 -4.2458 29 6 5.8465 7.5079 -4.6838 30 6 3.9867 3.5774 -1.3956 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 5.9130 2.0752 -0.4263 37 1 5.8886 3.2432 0.9653 38 1 5.1966 6.1614 -0.9646 39 1 6.2760 3.1760 -2.6768 40 1 7.3997 4.1197 -1.6693 41 1 5.5193 5.8934 -2.8081 42 1 9.5177 6.0521 -5.8804 43 1 8.1781 7.9843 -7.7336 44 1 6.4040 9.6182 -7.2822 45 1 4.8786 11.0211 -6.8892 46 1 2.7893 12.2599 -5.7187 47 1 1.9260 11.9245 -2.9611 48 1 0.3606 9.9702 -4.4307 49 1 0.7110 9.9850 -1.0101 50 1 1.6652 8.3104 -2.4950 51 1 5.1932 7.3778 -3.8337 52 1 3.2297 4.3440 -1.5609 53 1 4.0392 2.8510 -2.2066 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_13259648.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:03:45 Heat of formation + Delta-G solvation = -163.150379 kcal Electronic energy + Delta-G solvation = -40244.630800 eV Core-core repulsion = 34823.510497 eV Total energy + Delta-G solvation = -5421.120303 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.164 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.66955 -42.19871 -41.56752 -40.55568 -39.50652 -38.19066 -37.84747 -37.77053 -36.03515 -35.39271 -34.18294 -32.86215 -32.70810 -32.51763 -30.07763 -29.54479 -27.05475 -26.51795 -26.36434 -25.00804 -23.84344 -23.46581 -22.84936 -21.99773 -21.78974 -21.24993 -20.80153 -19.95715 -19.21375 -18.90834 -18.51287 -17.83752 -17.75061 -17.69207 -17.44573 -17.40753 -16.96423 -16.73047 -16.53694 -16.29359 -16.10803 -15.98882 -15.76846 -15.53124 -15.18907 -14.96829 -14.65914 -14.49830 -14.41958 -14.31010 -14.14994 -13.93386 -13.83396 -13.75550 -13.54837 -13.53559 -13.27274 -13.21517 -13.11016 -13.00943 -12.85441 -12.78186 -12.60299 -12.31637 -12.09040 -11.91397 -11.76051 -11.61193 -11.49335 -11.04286 -11.01446 -10.90497 -10.75656 -10.49401 -10.36601 -10.14916 -8.88824 -4.91690 -0.55216 -0.20446 0.79157 1.01374 1.20045 1.49855 1.51138 1.57248 1.74033 1.85237 1.89188 1.97496 2.63041 2.82171 3.07739 3.11931 3.23193 3.29645 3.34100 3.39925 3.43576 3.53759 3.66680 3.87525 3.91786 3.92246 3.99622 4.04079 4.06871 4.18083 4.22038 4.27250 4.30876 4.36414 4.47761 4.55117 4.59795 4.64965 4.65302 4.70602 4.76559 4.81896 4.82570 4.84472 4.88507 4.90803 5.03528 5.07316 5.09754 5.15283 5.16557 5.22192 5.38219 5.46260 5.51631 6.00538 6.26959 6.37529 6.59117 6.60541 6.73231 7.04298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.469 3.531 5 O -0.538 6.538 6 C -0.101 4.101 7 H 0.146 0.854 8 C -0.105 4.105 9 C 0.114 3.886 10 O -0.534 6.534 11 C 0.108 3.892 12 N -0.714 5.714 13 C 0.560 3.440 14 O -0.556 6.556 15 C -0.179 4.179 16 C 0.164 3.836 17 O -0.496 6.496 18 C -0.147 4.147 19 C -0.045 4.045 20 C -0.040 4.040 21 C 0.025 3.975 22 C -0.191 4.191 23 C -0.183 4.183 24 C -0.051 4.051 25 C -0.042 4.042 26 O -0.538 6.538 27 Si 0.774 3.226 28 O -0.169 6.169 29 C -0.049 4.049 30 C -0.141 4.141 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.392 0.608 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.409 0.591 42 H 0.411 0.589 43 H 0.162 0.838 44 H 0.164 0.836 45 H 0.172 0.828 46 H 0.159 0.841 47 H 0.150 0.850 48 H 0.390 0.610 49 H -0.290 1.290 50 H -0.278 1.278 51 H 0.154 0.846 52 H 0.108 0.892 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 6.537 0.034 6.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.277 6.277 4 C 0.314 3.686 5 O -0.428 6.428 6 C -0.120 4.120 7 H 0.164 0.836 8 C -0.143 4.143 9 C 0.072 3.928 10 O -0.342 6.342 11 C -0.015 4.015 12 N -0.370 5.370 13 C 0.348 3.652 14 O -0.435 6.435 15 C -0.183 4.183 16 C 0.117 3.883 17 O -0.310 6.310 18 C -0.166 4.166 19 C -0.063 4.063 20 C -0.040 4.040 21 C -0.024 4.024 22 C -0.210 4.210 23 C -0.203 4.203 24 C -0.101 4.101 25 C -0.151 4.151 26 O -0.346 6.346 27 Si 0.677 3.323 28 O -0.067 6.067 29 C -0.068 4.068 30 C -0.178 4.178 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.243 0.757 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.248 0.752 42 H 0.272 0.728 43 H 0.180 0.820 44 H 0.181 0.819 45 H 0.190 0.810 46 H 0.177 0.823 47 H 0.168 0.832 48 H 0.239 0.761 49 H -0.217 1.217 50 H -0.204 1.204 51 H 0.172 0.828 52 H 0.127 0.873 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.108 4.760 0.929 5.288 hybrid contribution -0.625 0.097 -1.250 1.401 sum -2.732 4.857 -0.321 5.582 Atomic orbital electron populations 1.21825 0.90688 1.04276 1.03727 1.23262 0.96947 0.79393 1.02480 1.86530 1.24325 1.33456 1.83402 1.24087 0.80530 0.93010 0.71002 1.90670 1.61133 1.44207 1.46754 1.22543 0.97136 0.89653 1.02623 0.83599 1.23054 0.93177 0.96802 1.01226 1.22105 0.93188 0.85567 0.91919 1.86587 1.95978 1.14654 1.37021 1.21881 0.99971 0.89282 0.90414 1.45650 1.35774 1.28035 1.27496 1.18231 0.81270 0.85059 0.80611 1.90832 1.34324 1.45509 1.72832 1.20199 1.01947 0.97880 0.98239 1.18906 0.90136 0.88019 0.91228 1.84711 1.23527 1.48540 1.74224 1.21568 1.00753 0.92740 1.01495 1.21423 0.91286 0.98934 0.94630 1.17674 0.94907 0.93781 0.97636 1.20387 0.93855 0.98045 0.90160 1.22150 1.00120 0.95623 1.03097 1.21795 0.99021 1.02780 0.96656 1.23015 0.97048 0.88559 1.01471 1.24606 0.79031 1.12366 0.99090 1.86648 1.35477 1.38772 1.73724 0.93699 0.87198 0.74656 0.76755 1.83893 1.36900 1.41767 1.44143 1.21415 0.95186 0.91420 0.98736 1.23698 0.98603 1.01139 0.94386 0.88550 0.91208 0.91288 0.91452 0.91380 0.87776 0.88491 0.75698 0.90693 0.90661 0.75221 0.72830 0.82034 0.81855 0.81017 0.82285 0.83226 0.76055 1.21722 1.20417 0.82835 0.87322 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.43 10.29 71.98 0.74 1.17 16 2 C 0.05 0.10 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.53 10.22 -51.42 -0.53 -2.05 16 4 C 0.47 2.33 7.48 71.24 0.53 2.86 16 5 O -0.54 -6.01 15.65 21.98 0.34 -5.67 16 6 C -0.10 0.15 4.19 -11.01 -0.05 0.10 16 7 H 0.15 -0.60 8.14 -2.38 -0.02 -0.62 16 8 C -0.10 0.13 6.80 31.12 0.21 0.34 16 9 C 0.11 -0.50 1.48 -10.25 -0.02 -0.51 16 10 O -0.53 3.09 13.40 -148.98 -2.00 1.10 16 11 C 0.11 -0.16 5.32 86.38 0.46 0.30 16 12 N -0.71 2.17 5.30 -466.24 -2.47 -0.30 16 13 C 0.56 2.21 7.76 86.70 0.67 2.88 16 14 O -0.56 -6.85 15.14 17.01 0.26 -6.59 16 15 C -0.18 -0.14 5.88 -20.04 -0.12 -0.26 16 16 C 0.16 0.24 6.72 22.89 0.15 0.39 16 17 O -0.50 -2.07 11.55 -68.68 -0.79 -2.86 16 18 C -0.15 0.52 9.96 22.30 0.22 0.75 16 19 C -0.04 0.24 9.54 22.55 0.22 0.46 16 20 C -0.04 0.13 5.87 -20.13 -0.12 0.01 16 21 C 0.03 -0.06 7.03 24.27 0.17 0.11 16 22 C -0.19 0.58 10.26 22.40 0.23 0.81 16 23 C -0.18 0.34 10.78 22.13 0.24 0.58 16 24 C -0.05 0.12 6.20 24.88 0.15 0.28 16 25 C -0.04 0.19 2.98 71.24 0.21 0.40 16 26 O -0.54 0.72 12.88 -148.98 -1.92 -1.20 16 27 Si 0.77 -4.24 32.11 68.60 2.20 -2.04 16 28 O -0.17 0.37 8.80 -6.55 -0.06 0.32 16 29 C -0.05 0.18 9.20 22.79 0.21 0.39 16 30 C -0.14 0.65 7.02 31.13 0.22 0.87 16 31 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 35 H 0.07 0.15 8.13 -2.39 -0.02 0.14 16 36 H 0.10 0.12 7.39 -2.39 -0.02 0.10 16 37 H 0.10 -0.15 8.14 -2.38 -0.02 -0.17 16 38 H 0.39 -5.05 7.33 -74.06 -0.54 -5.60 16 39 H 0.07 0.08 7.95 -2.39 -0.02 0.06 16 40 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.41 -3.92 5.06 -92.71 -0.47 -4.39 16 42 H 0.41 -1.20 9.06 -74.06 -0.67 -1.88 16 43 H 0.16 -1.17 8.06 -2.91 -0.02 -1.19 16 44 H 0.16 -1.72 6.96 -2.91 -0.02 -1.74 16 45 H 0.17 -1.31 7.24 -2.91 -0.02 -1.33 16 46 H 0.16 -0.56 8.06 -2.91 -0.02 -0.58 16 47 H 0.15 -1.09 7.96 -2.39 -0.02 -1.11 16 48 H 0.39 -2.55 8.70 -74.06 -0.64 -3.20 16 49 H -0.29 -0.42 7.11 99.48 0.71 0.28 16 50 H -0.28 0.42 7.11 99.48 0.71 1.13 16 51 H 0.15 -1.37 6.24 -2.91 -0.02 -1.39 16 52 H 0.11 -0.86 8.14 -2.39 -0.02 -0.88 16 53 H 0.09 -0.29 7.92 -2.39 -0.02 -0.31 16 Total: 0.00 -28.90 451.41 -1.44 -30.33 By element: Atomic # 1 Polarization: -22.24 SS G_CDS: -1.27 Total: -23.51 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 4.79 Total: 12.47 kcal Atomic # 7 Polarization: 2.17 SS G_CDS: -2.47 Total: -0.30 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -4.69 Total: -16.95 kcal Atomic # 14 Polarization: -4.24 SS G_CDS: 2.20 Total: -2.04 kcal Total: -28.90 -1.44 -30.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_13259648.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.818 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds