Wall clock time and date at job start Sun Mar 7 2021 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47019 * 2 1 4 4 C 1.34230 * 116.99628 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00225 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99426 * 179.97438 * 4 3 2 7 7 H 1.08994 * 112.85038 * 48.81341 * 6 4 3 8 8 C 1.53784 * 113.60858 * 180.02562 * 6 4 3 9 9 C 1.53790 * 87.07837 * 139.98322 * 8 6 4 10 10 O 1.42898 * 113.61183 * 89.20043 * 9 8 6 11 11 C 1.53001 * 113.61259 * 220.01578 * 9 8 6 12 12 N 1.46505 * 109.46894 * 178.47230 * 11 9 8 13 13 C 1.34767 * 119.99691 * 180.02562 * 12 11 9 14 14 O 1.21628 * 120.00367 * 359.97438 * 13 12 11 15 15 C 1.47267 * 119.99842 * 179.97438 * 13 12 11 16 16 C 1.36773 * 126.94141 * 359.97438 * 15 13 12 17 17 N 1.34657 * 108.39660 * 180.29481 * 16 15 13 18 18 C 1.46497 * 124.84913 * 179.73307 * 17 16 15 19 19 C 1.36447 * 110.29676 * 359.55949 * 17 16 15 20 20 C 1.50700 * 125.57173 * 180.20478 * 19 17 16 21 21 O 1.42904 * 109.47174 * 30.29715 * 20 19 17 22 22 Si 1.86295 * 109.47310 * 150.30383 * 20 19 17 23 23 C 1.34486 * 108.85992 * 0.44135 * 19 17 16 24 24 C 1.53776 * 87.17110 * 334.61082 * 9 8 6 25 25 H 1.08994 * 109.47449 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47420 * 300.00469 * 1 2 3 27 27 H 1.08999 * 109.47011 * 60.00334 * 1 2 3 28 28 H 1.08999 * 109.47420 * 239.99531 * 2 1 3 29 29 H 1.09002 * 109.46564 * 119.99430 * 2 1 3 30 30 H 1.08997 * 113.61962 * 25.44107 * 8 6 4 31 31 H 1.08997 * 113.61769 * 254.52851 * 8 6 4 32 32 H 0.96697 * 113.99732 * 181.52810 * 10 9 8 33 33 H 1.09002 * 109.46796 * 58.47452 * 11 9 8 34 34 H 1.09001 * 109.47267 * 298.47246 * 11 9 8 35 35 H 0.96998 * 119.99818 * 0.02562 * 12 11 9 36 36 H 1.08002 * 125.79812 * 0.02562 * 16 15 13 37 37 H 1.09000 * 109.46896 * 90.02935 * 18 17 16 38 38 H 1.09003 * 109.47333 * 210.02160 * 18 17 16 39 39 H 1.08994 * 109.47208 * 330.02345 * 18 17 16 40 40 H 1.09003 * 109.46924 * 270.30321 * 20 19 17 41 41 H 0.96699 * 113.99786 * 179.97438 * 21 20 19 42 42 H 1.48507 * 109.99943 * 178.68046 * 22 20 19 43 43 H 1.48504 * 110.00025 * 299.99270 * 22 20 19 44 44 H 1.08000 * 126.83781 * 179.72126 * 23 19 17 45 45 H 1.08997 * 113.61468 * 139.94339 * 24 9 8 46 46 H 1.09000 * 113.61177 * 270.84081 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.4708 3.5818 0.7553 8 6 5.4582 2.9680 0.0001 9 6 5.3565 4.1421 -0.9880 10 8 5.2836 5.4201 -0.3529 11 6 6.3988 4.0934 -2.1070 12 7 6.1973 5.2280 -3.0117 13 6 7.0043 5.3905 -4.0787 14 8 7.9003 4.5956 -4.2903 15 6 6.8015 6.5307 -4.9885 16 6 5.8451 7.5032 -4.8870 17 7 5.9955 8.3563 -5.9180 18 6 5.1549 9.5310 -6.1619 19 6 7.0450 7.9723 -6.7008 20 6 7.5193 8.6836 -7.9419 21 8 7.2508 10.0820 -7.8214 22 14 9.3517 8.4184 -8.1477 23 6 7.5839 6.8525 -6.1869 24 6 3.9856 3.5789 -1.3980 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 5.9128 2.0749 -0.4285 31 1 5.8894 3.2435 0.9625 32 1 5.1960 6.1607 -0.9683 33 1 6.2917 3.1619 -2.6629 34 1 7.3982 4.1460 -1.6752 35 1 5.4830 5.8621 -2.8427 36 1 5.0940 7.5724 -4.1141 37 1 5.5834 10.3959 -5.6555 38 1 5.1044 9.7256 -7.2332 39 1 4.1515 9.3457 -5.7786 40 1 6.9948 8.2866 -8.8110 41 1 7.5309 10.6036 -8.5860 42 1 9.8260 9.0884 -9.3853 43 1 10.0783 8.9556 -6.9692 44 1 8.4250 6.2998 -6.5786 45 1 3.2296 4.3466 -1.5627 46 1 4.0368 2.8529 -2.2095 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16466198_13287730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:01 Heat of formation + Delta-G solvation = -118.128515 kcal Electronic energy + Delta-G solvation = -29229.767981 eV Core-core repulsion = 24895.443008 eV Total energy + Delta-G solvation = -4334.324974 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.44997 -42.02746 -40.69751 -39.63247 -37.95539 -37.59997 -35.96361 -35.20668 -33.79801 -32.69822 -31.77746 -29.67941 -27.67177 -27.06389 -26.51187 -25.77770 -23.93359 -23.28819 -21.85479 -21.10804 -20.81362 -20.38870 -19.11784 -18.61910 -18.58218 -17.67136 -17.64943 -17.35076 -17.04904 -16.85942 -16.45000 -16.22113 -16.02760 -15.66040 -15.55210 -15.11441 -14.89188 -14.56214 -14.48161 -14.26124 -14.12383 -13.90781 -13.85453 -13.56962 -13.46963 -13.34083 -13.17797 -13.16126 -12.94238 -12.76590 -12.71820 -12.58973 -12.32769 -12.03625 -11.70984 -11.49857 -11.40361 -10.96652 -10.91383 -10.79152 -10.10394 -9.56136 -9.18264 -4.94815 0.75356 1.01339 1.19813 1.47871 1.57003 1.66077 1.83954 2.01978 2.16654 2.65327 2.74893 2.96787 3.08389 3.32955 3.42369 3.45341 3.59516 3.74830 3.79077 3.90203 3.95915 4.01742 4.12216 4.13741 4.22139 4.29191 4.30011 4.37436 4.44445 4.51475 4.53487 4.55389 4.72652 4.73641 4.78838 4.80549 4.88098 4.93483 4.98763 5.01956 5.05597 5.35879 5.49341 5.69544 5.99774 6.12018 6.22444 6.33566 6.53608 6.78457 7.40801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.470 3.530 5 O -0.504 6.504 6 C -0.103 4.103 7 H 0.131 0.869 8 C -0.100 4.100 9 C 0.098 3.902 10 O -0.531 6.531 11 C 0.106 3.894 12 N -0.734 5.734 13 C 0.595 3.405 14 O -0.536 6.536 15 C -0.226 4.226 16 C 0.048 3.952 17 N -0.422 5.422 18 C 0.075 3.925 19 C 0.026 3.974 20 C -0.050 4.050 21 O -0.543 6.543 22 Si 0.707 3.293 23 C -0.133 4.133 24 C -0.145 4.145 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.377 0.623 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.392 0.608 36 H 0.170 0.830 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.384 0.616 42 H -0.258 1.258 43 H -0.252 1.252 44 H 0.159 0.841 45 H 0.090 0.910 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 3.791 -2.755 7.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.313 3.687 5 O -0.392 6.392 6 C -0.122 4.122 7 H 0.149 0.851 8 C -0.138 4.138 9 C 0.056 3.944 10 O -0.336 6.336 11 C -0.017 4.017 12 N -0.388 5.388 13 C 0.384 3.616 14 O -0.412 6.412 15 C -0.237 4.237 16 C -0.088 4.088 17 N -0.096 5.096 18 C -0.066 4.066 19 C -0.083 4.083 20 C -0.159 4.159 21 O -0.351 6.351 22 Si 0.605 3.395 23 C -0.157 4.157 24 C -0.182 4.182 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.112 0.888 32 H 0.225 0.775 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.226 0.774 36 H 0.187 0.813 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.233 0.767 42 H -0.183 1.183 43 H -0.176 1.176 44 H 0.176 0.824 45 H 0.108 0.892 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.344 3.014 -1.944 5.634 hybrid contribution -1.108 1.603 -0.694 2.069 sum -5.452 4.618 -2.639 7.616 Atomic orbital electron populations 1.21819 0.92355 1.03257 1.03626 1.23089 0.95598 0.79899 1.02776 1.86518 1.24415 1.32716 1.83703 1.23535 0.80671 0.92326 0.72155 1.90687 1.60501 1.42912 1.45051 1.22456 0.97337 0.90977 1.01423 0.85102 1.23051 0.93124 0.96725 1.00880 1.22382 0.93706 0.85358 0.92949 1.86594 1.96073 1.14537 1.36432 1.21893 0.99675 0.90317 0.89854 1.45698 1.35590 1.29594 1.27932 1.17332 0.80839 0.83999 0.79471 1.90807 1.32223 1.44944 1.73270 1.20199 1.02915 0.99543 1.01039 1.21874 1.01385 0.92043 0.93511 1.43450 1.24404 1.21603 1.20170 1.22154 0.93705 0.86201 1.04573 1.19665 0.93551 0.98459 0.96671 1.24432 1.13070 0.82521 0.95904 1.86522 1.84158 1.17533 1.46908 0.94286 0.72801 0.91971 0.80403 1.21541 1.01777 0.96807 0.95605 1.23700 0.98282 1.00978 0.95276 0.90007 0.91373 0.91400 0.91091 0.91068 0.86676 0.88762 0.77451 0.89801 0.89955 0.77350 0.81299 0.90452 0.88821 0.90174 0.90212 0.76674 1.18256 1.17605 0.82368 0.89171 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.23 10.29 37.16 0.38 0.61 16 2 C 0.06 0.03 6.19 37.16 0.23 0.26 16 3 O -0.36 -0.65 10.22 -39.26 -0.40 -1.05 16 4 C 0.47 1.00 7.49 36.01 0.27 1.27 16 5 O -0.50 -2.47 15.65 -18.75 -0.29 -2.76 16 6 C -0.10 0.06 4.20 -90.87 -0.38 -0.32 16 7 H 0.13 -0.18 8.14 -51.93 -0.42 -0.61 16 8 C -0.10 0.05 6.80 -25.91 -0.18 -0.13 16 9 C 0.10 -0.17 1.46 -89.80 -0.13 -0.30 16 10 O -0.53 0.88 13.40 -35.23 -0.47 0.41 16 11 C 0.11 -0.04 5.30 -4.04 -0.02 -0.06 16 12 N -0.73 0.69 5.33 -61.43 -0.33 0.36 16 13 C 0.59 1.69 7.81 -12.59 -0.10 1.59 16 14 O -0.54 -3.75 16.97 5.25 0.09 -3.67 16 15 C -0.23 -0.39 6.29 -103.35 -0.65 -1.04 16 16 C 0.05 -0.04 10.83 -16.84 -0.18 -0.23 16 17 N -0.42 0.04 3.09 -119.90 -0.37 -0.33 16 18 C 0.07 -0.19 9.80 59.85 0.59 0.40 16 19 C 0.03 0.02 6.17 -81.86 -0.50 -0.48 16 20 C -0.05 0.06 2.85 36.01 0.10 0.16 16 21 O -0.54 0.69 10.32 -35.23 -0.36 0.33 16 22 Si 0.71 -0.72 31.12 -169.99 -5.29 -6.01 16 23 C -0.13 -0.26 9.49 -37.50 -0.36 -0.61 16 24 C -0.14 0.31 7.03 -25.83 -0.18 0.13 16 25 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 26 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 27 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 28 H 0.07 0.03 8.13 -51.93 -0.42 -0.39 16 29 H 0.07 0.04 8.13 -51.93 -0.42 -0.38 16 30 H 0.12 0.01 7.39 -51.93 -0.38 -0.37 16 31 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 32 H 0.38 -1.90 7.41 45.56 0.34 -1.56 16 33 H 0.08 0.03 7.98 -51.93 -0.41 -0.39 16 34 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 35 H 0.39 -1.67 6.06 -40.82 -0.25 -1.92 16 36 H 0.17 -0.84 7.45 -52.49 -0.39 -1.23 16 37 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 38 H 0.09 -0.22 6.76 -51.93 -0.35 -0.57 16 39 H 0.08 -0.37 8.13 -51.93 -0.42 -0.79 16 40 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 41 H 0.38 -1.90 8.74 45.56 0.40 -1.50 16 42 H -0.26 -0.10 7.11 56.52 0.40 0.30 16 43 H -0.25 -0.75 7.11 56.52 0.40 -0.35 16 44 H 0.16 0.13 6.89 -52.49 -0.36 -0.23 16 45 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 46 H 0.10 -0.17 7.94 -51.93 -0.41 -0.58 16 LS Contribution 386.43 15.07 5.82 5.82 Total: 0.00 -11.88 386.43 -8.80 -20.69 By element: Atomic # 1 Polarization: -8.94 SS G_CDS: -6.09 Total: -15.03 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.11 Total: 1.24 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -0.70 Total: 0.03 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -1.44 Total: -6.75 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: -5.29 Total: -6.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -11.88 -8.80 -20.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_13287730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.443 kcal (2) G-P(sol) polarization free energy of solvation -11.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds