Wall clock time and date at job start Sun Mar 7 2021 07:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47194 * 2 1 4 4 C 1.34225 * 117.00127 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99933 * 0.02562 * 4 3 2 6 6 C 1.50707 * 120.00267 * 180.02562 * 4 3 2 7 7 H 1.09003 * 112.90619 * 48.74795 * 6 4 3 8 8 C 1.53778 * 113.61478 * 180.02562 * 6 4 3 9 9 C 1.53774 * 87.07981 * 139.97904 * 8 6 4 10 10 O 1.42903 * 113.61673 * 89.11770 * 9 8 6 11 11 C 1.52996 * 113.61287 * 219.93089 * 9 8 6 12 12 N 1.46501 * 109.47188 * 178.47165 * 11 9 8 13 13 C 1.34781 * 120.00140 * 180.02562 * 12 11 9 14 14 O 1.21549 * 119.99815 * 359.97438 * 13 12 11 15 15 C 1.47844 * 119.99832 * 180.02562 * 13 12 11 16 16 C 1.39514 * 120.55959 * 359.97438 * 15 13 12 17 17 N 1.31698 * 120.56421 * 179.97438 * 16 15 13 18 18 C 1.31922 * 121.87967 * 0.02562 * 17 16 15 19 19 C 1.38355 * 121.08134 * 0.02562 * 18 17 16 20 20 C 1.50706 * 120.34825 * 179.97438 * 19 18 17 21 21 O 1.42899 * 109.47063 * 244.99861 * 20 19 18 22 22 Si 1.86302 * 109.47190 * 4.99924 * 20 19 18 23 23 C 1.38356 * 119.30168 * 359.69185 * 19 18 17 24 24 C 1.53776 * 87.08537 * 334.56708 * 9 8 6 25 25 H 1.09001 * 109.47398 * 59.99394 * 1 2 3 26 26 H 1.08991 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47178 * 299.99972 * 1 2 3 28 28 H 1.08997 * 109.46784 * 240.00622 * 2 1 3 29 29 H 1.08993 * 109.46949 * 119.99909 * 2 1 3 30 30 H 1.08996 * 113.61425 * 25.42877 * 8 6 4 31 31 H 1.09002 * 113.60959 * 254.52747 * 8 6 4 32 32 H 0.96700 * 114.00311 * 179.97438 * 10 9 8 33 33 H 1.09006 * 109.47403 * 298.47194 * 11 9 8 34 34 H 1.08996 * 109.47040 * 58.47202 * 11 9 8 35 35 H 0.97003 * 120.00323 * 0.02562 * 12 11 9 36 36 H 1.07999 * 119.72020 * 0.02562 * 16 15 13 37 37 H 1.08005 * 119.46329 * 179.97438 * 18 17 16 38 38 H 1.09002 * 109.46845 * 124.99640 * 20 19 18 39 39 H 0.96696 * 113.99937 * 180.02562 * 21 20 19 40 40 H 1.48503 * 109.99666 * 300.00099 * 22 20 19 41 41 H 1.48497 * 110.00152 * 61.31643 * 22 20 19 42 42 H 1.08001 * 120.85830 * 180.29831 * 23 19 18 43 43 H 1.09002 * 113.61807 * 139.98218 * 24 9 8 44 44 H 1.09003 * 113.61352 * 270.88748 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.4715 3.5821 0.7555 8 6 5.4583 2.9681 -0.0013 9 6 5.3556 4.1431 -0.9879 10 8 5.2814 5.4204 -0.3513 11 6 6.3981 4.0968 -2.1068 12 7 6.1958 5.2322 -3.0102 13 6 7.0030 5.3969 -4.0769 14 8 7.8991 4.6035 -4.2891 15 6 6.7991 6.5430 -4.9882 16 6 5.7745 7.4609 -4.7553 17 7 5.5931 8.4822 -5.5668 18 6 6.3611 8.6794 -6.6211 19 6 7.3978 7.8138 -6.9215 20 6 8.2647 8.0546 -8.1305 21 8 8.0822 6.9907 -9.0669 22 14 7.7869 9.6704 -8.9254 23 6 7.6341 6.7283 -6.0968 24 6 3.9851 3.5780 -1.3966 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.9124 2.0753 -0.4313 31 1 5.8903 3.2424 0.9611 32 1 5.2171 6.1635 -0.9667 33 1 7.3975 4.1498 -1.6747 34 1 6.2921 3.1659 -2.6638 35 1 5.4809 5.8655 -2.8406 36 1 5.1250 7.3332 -3.9019 37 1 6.1771 9.5299 -7.2608 38 1 9.3104 8.0949 -7.8256 39 1 8.6110 7.0799 -9.8715 40 1 6.3632 9.6282 -9.3456 41 1 8.0023 10.7886 -7.9724 42 1 8.4395 6.0395 -6.3049 43 1 3.2279 4.3447 -1.5606 44 1 4.0365 2.8519 -2.2080 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_13287814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:15 Heat of formation + Delta-G solvation = -132.054808 kcal Electronic energy + Delta-G solvation = -28525.296380 eV Core-core repulsion = 24217.678996 eV Total energy + Delta-G solvation = -4307.617384 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.26700 -41.92670 -40.81207 -39.97167 -37.86358 -37.79708 -36.13293 -35.54043 -33.98437 -33.41584 -32.69418 -29.81986 -27.34852 -27.09280 -26.73234 -25.23969 -23.89524 -23.68871 -21.98504 -21.82125 -20.80732 -19.58082 -18.85968 -18.58622 -18.35370 -18.20700 -17.78783 -17.40641 -17.35518 -16.86232 -16.68839 -16.19002 -16.06282 -15.47890 -15.30180 -15.20712 -14.94553 -14.83593 -14.48026 -14.39358 -14.29369 -14.21223 -13.83726 -13.82268 -13.54103 -13.29939 -13.00270 -12.81433 -12.64858 -12.59121 -12.31034 -12.18850 -11.84875 -11.62210 -11.59669 -11.41722 -11.20020 -10.96498 -10.85144 -10.63716 -10.36672 -10.23062 -4.96919 -0.74819 -0.15109 1.02048 1.22199 1.49923 1.56540 1.64343 1.75156 1.91358 2.46725 2.81264 2.91183 3.07905 3.17372 3.31284 3.38989 3.41347 3.43237 3.56080 3.60462 3.71673 3.86787 3.93361 3.99228 4.00752 4.13277 4.18537 4.28191 4.28561 4.43182 4.55857 4.58599 4.65485 4.69794 4.76565 4.79368 4.83460 4.85896 4.88186 5.03438 5.08702 5.10856 5.17114 5.39308 6.13962 6.46623 6.57921 6.61210 6.84227 6.87728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.469 3.531 5 O -0.539 6.539 6 C -0.101 4.101 7 H 0.145 0.855 8 C -0.107 4.107 9 C 0.114 3.886 10 O -0.537 6.537 11 C 0.106 3.894 12 N -0.706 5.706 13 C 0.571 3.429 14 O -0.566 6.566 15 C -0.193 4.193 16 C 0.145 3.855 17 N -0.495 5.495 18 C 0.110 3.890 19 C -0.141 4.141 20 C -0.081 4.081 21 O -0.565 6.565 22 Si 0.779 3.221 23 C 0.002 3.998 24 C -0.138 4.138 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.393 0.607 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.414 0.586 36 H 0.202 0.798 37 H 0.158 0.842 38 H 0.100 0.900 39 H 0.407 0.593 40 H -0.288 1.288 41 H -0.280 1.280 42 H 0.147 0.853 43 H 0.113 0.887 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 4.312 -2.407 5.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.277 6.277 4 C 0.314 3.686 5 O -0.429 6.429 6 C -0.120 4.120 7 H 0.163 0.837 8 C -0.145 4.145 9 C 0.073 3.927 10 O -0.345 6.345 11 C -0.017 4.017 12 N -0.360 5.360 13 C 0.357 3.643 14 O -0.446 6.446 15 C -0.198 4.198 16 C -0.013 4.013 17 N -0.202 5.202 18 C -0.045 4.045 19 C -0.143 4.143 20 C -0.191 4.191 21 O -0.376 6.376 22 Si 0.683 3.317 23 C -0.025 4.025 24 C -0.176 4.176 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.244 0.756 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.253 0.747 36 H 0.218 0.782 37 H 0.174 0.826 38 H 0.118 0.882 39 H 0.259 0.741 40 H -0.215 1.215 41 H -0.207 1.207 42 H 0.165 0.835 43 H 0.131 0.869 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.431 4.139 -1.337 4.983 hybrid contribution 0.436 -0.822 -0.057 0.932 sum -1.995 3.317 -1.394 4.114 Atomic orbital electron populations 1.21826 0.90657 1.04274 1.03766 1.23258 0.96972 0.79392 1.02456 1.86527 1.24303 1.33447 1.83380 1.24090 0.80535 0.93005 0.70983 1.90672 1.61155 1.44232 1.46804 1.22537 0.96994 0.89642 1.02843 0.83719 1.23070 0.93322 0.96895 1.01188 1.22093 0.93353 0.85490 0.91807 1.86601 1.96197 1.14637 1.37078 1.21954 1.00004 0.89728 0.90041 1.45567 1.34616 1.29671 1.26190 1.18033 0.81284 0.84158 0.80777 1.90821 1.33758 1.46026 1.73972 1.21030 1.01009 0.98844 0.98880 1.23547 0.93319 0.87161 0.97306 1.67742 1.26982 1.21048 1.04455 1.22909 0.89876 0.97772 0.93960 1.20692 0.98483 0.96832 0.98337 1.24841 1.01484 1.02535 0.90208 1.86437 1.71148 1.46737 1.33230 0.93822 0.80639 0.72032 0.85193 1.21724 0.96406 0.94355 0.90010 1.23685 0.98434 1.01190 0.94246 0.91200 0.88575 0.91229 0.91416 0.91465 0.87687 0.88739 0.75608 0.90588 0.90129 0.74713 0.78166 0.82578 0.88247 0.74079 1.21515 1.20707 0.83511 0.86887 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.49 10.29 71.98 0.74 1.23 16 2 C 0.05 0.07 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.34 10.22 -51.37 -0.53 -1.86 16 4 C 0.47 2.07 7.48 71.24 0.53 2.60 16 5 O -0.54 -5.78 15.65 21.96 0.34 -5.43 16 6 C -0.10 0.22 4.20 -11.01 -0.05 0.17 16 7 H 0.15 -0.65 8.14 -2.39 -0.02 -0.67 16 8 C -0.11 0.19 6.80 31.12 0.21 0.40 16 9 C 0.11 -0.62 1.46 -10.27 -0.02 -0.64 16 10 O -0.54 3.37 13.41 -148.98 -2.00 1.38 16 11 C 0.11 -0.31 5.31 86.38 0.46 0.15 16 12 N -0.71 3.35 5.28 -465.97 -2.46 0.89 16 13 C 0.57 1.82 7.78 86.79 0.68 2.50 16 14 O -0.57 -6.83 16.42 -3.87 -0.06 -6.89 16 15 C -0.19 -0.39 5.89 -19.99 -0.12 -0.51 16 16 C 0.15 -0.21 10.71 85.02 0.91 0.70 16 17 N -0.49 -1.81 10.35 -194.76 -2.01 -3.83 16 18 C 0.11 0.44 9.84 84.71 0.83 1.27 16 19 C -0.14 -0.43 5.38 -19.81 -0.11 -0.54 16 20 C -0.08 0.20 2.81 71.24 0.20 0.40 16 21 O -0.56 0.89 12.82 -148.98 -1.91 -1.02 16 22 Si 0.78 -3.80 29.88 68.60 2.05 -1.75 16 23 C 0.00 0.01 9.38 22.73 0.21 0.22 16 24 C -0.14 0.84 7.01 31.12 0.22 1.06 16 25 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 28 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 29 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 30 H 0.10 0.05 7.39 -2.39 -0.02 0.03 16 31 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.39 -5.41 7.39 -74.06 -0.55 -5.95 16 33 H 0.08 0.00 8.14 -2.38 -0.02 -0.02 16 34 H 0.08 -0.06 7.98 -2.39 -0.02 -0.08 16 35 H 0.41 -5.07 5.19 -92.71 -0.48 -5.55 16 36 H 0.20 -2.24 6.42 -2.91 -0.02 -2.26 16 37 H 0.16 0.37 4.87 -2.91 -0.01 0.36 16 38 H 0.10 -0.63 7.96 -2.39 -0.02 -0.65 16 39 H 0.41 -4.97 8.74 -74.06 -0.65 -5.61 16 40 H -0.29 -0.57 7.05 99.48 0.70 0.13 16 41 H -0.28 -0.02 7.11 99.48 0.71 0.69 16 42 H 0.15 0.79 7.74 -2.91 -0.02 0.76 16 43 H 0.11 -1.12 8.14 -2.39 -0.02 -1.14 16 44 H 0.10 -0.46 7.94 -2.39 -0.02 -0.48 16 Total: 0.00 -28.50 373.61 -2.00 -30.50 By element: Atomic # 1 Polarization: -20.94 SS G_CDS: -0.57 Total: -21.52 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 5.15 Total: 9.54 kcal Atomic # 7 Polarization: 1.53 SS G_CDS: -4.48 Total: -2.94 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -4.15 Total: -13.83 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: 2.05 Total: -1.75 kcal Total: -28.50 -2.00 -30.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_13287814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.555 kcal (2) G-P(sol) polarization free energy of solvation -28.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds