Wall clock time and date at job start Sun Mar 7 2021 07:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45192 * 109.47327 * 2 1 4 4 C 1.34233 * 117.00369 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99583 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00053 * 179.97438 * 4 3 2 7 7 H 1.08993 * 112.91004 * 311.24954 * 6 4 3 8 8 C 1.53962 * 113.66521 * 82.55365 * 6 4 3 9 9 C 1.53782 * 87.11063 * 139.88647 * 8 6 4 10 10 O 1.42895 * 113.61276 * 89.18486 * 9 8 6 11 11 C 1.53003 * 113.61259 * 220.08801 * 9 8 6 12 12 N 1.46501 * 109.47008 * 282.49690 * 11 9 8 13 13 C 1.34780 * 119.99835 * 179.97438 * 12 11 9 14 14 O 1.21611 * 119.99941 * 0.02562 * 13 12 11 15 15 C 1.47372 * 119.99737 * 180.02562 * 13 12 11 16 16 C 1.36420 * 127.18752 * 179.97438 * 15 13 12 17 17 C 1.50699 * 125.80303 * 0.02562 * 16 15 13 18 18 O 1.33652 * 108.39651 * 180.02562 * 16 15 13 19 19 C 1.34224 * 110.90766 * 0.02562 * 18 16 15 20 20 C 1.50694 * 125.43634 * 180.02562 * 19 18 16 21 21 O 1.42905 * 109.46847 * 244.97597 * 20 19 18 22 22 Si 1.86301 * 109.47401 * 4.97233 * 20 19 18 23 23 C 1.34176 * 109.12054 * 359.70542 * 19 18 16 24 24 C 1.53781 * 87.08260 * 334.63747 * 9 8 6 25 25 H 1.08997 * 109.47348 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46699 * 300.00272 * 1 2 3 27 27 H 1.08995 * 109.46824 * 59.99745 * 1 2 3 28 28 H 1.09001 * 109.47158 * 239.99871 * 2 1 3 29 29 H 1.09006 * 109.46796 * 119.99733 * 2 1 3 30 30 H 1.08997 * 113.53543 * 25.33321 * 8 6 4 31 31 H 1.08994 * 113.66446 * 254.45524 * 8 6 4 32 32 H 0.96707 * 113.99942 * 82.50612 * 10 9 8 33 33 H 1.09002 * 109.47145 * 42.49807 * 11 9 8 34 34 H 1.08997 * 109.46932 * 162.49761 * 11 9 8 35 35 H 0.96996 * 119.99946 * 0.02562 * 12 11 9 36 36 H 1.08995 * 109.47134 * 89.99831 * 17 16 15 37 37 H 1.09000 * 109.46873 * 209.99499 * 17 16 15 38 38 H 1.08994 * 109.47147 * 329.99426 * 17 16 15 39 39 H 1.08996 * 109.47772 * 124.97425 * 20 19 18 40 40 H 0.96699 * 114.00217 * 59.99704 * 21 20 19 41 41 H 1.48500 * 109.99933 * 58.68144 * 22 20 19 42 42 H 1.48501 * 110.00004 * 180.02562 * 22 20 19 43 43 H 1.08008 * 127.02065 * 180.26921 * 23 19 18 44 44 H 1.09002 * 113.61445 * 139.98212 * 24 9 8 45 45 H 1.09002 * 113.61408 * 270.79943 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.4710 3.5822 -0.7560 8 6 3.9886 3.5787 1.3969 9 6 5.3594 4.1421 0.9866 10 8 5.2862 5.4201 0.3516 11 6 6.4025 4.0914 2.1048 12 7 6.1526 5.1780 3.0552 13 6 6.9517 5.3305 4.1298 14 8 7.8804 4.5664 4.3102 15 6 6.7000 6.4231 5.0861 16 6 7.4101 6.7110 6.2148 17 6 8.6140 5.9555 6.7156 18 8 6.8565 7.7769 6.8010 19 6 5.7973 8.2124 6.1010 20 6 4.9339 9.3923 6.4661 21 8 3.6117 8.9404 6.7658 22 14 5.6505 10.2483 7.9576 23 6 5.6342 7.4337 5.0206 24 6 5.4583 2.9680 -0.0017 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 4.0401 2.8516 2.2073 31 1 3.2331 4.3465 1.5631 32 1 5.2239 6.1626 0.9681 33 1 6.3350 3.1341 2.6216 34 1 7.3989 4.2043 1.6777 35 1 5.4116 5.7872 2.9115 36 1 9.5186 6.3916 6.2921 37 1 8.6553 6.0176 7.8031 38 1 8.5386 4.9108 6.4140 39 1 4.8986 10.0896 5.6291 40 1 3.5671 8.3154 7.5023 41 1 7.0371 10.6950 7.6695 42 1 4.8077 11.4135 8.3282 43 1 4.8737 7.5284 4.2595 44 1 5.8893 3.2428 -0.9645 45 1 5.9130 2.0744 0.4260 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_13308374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:19 Heat of formation + Delta-G solvation = -159.298835 kcal Electronic energy + Delta-G solvation = -29557.388991 eV Core-core repulsion = 25123.560076 eV Total energy + Delta-G solvation = -4433.828915 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.77064 -42.14204 -40.92744 -39.97336 -37.97678 -37.77937 -36.01205 -35.44355 -34.15192 -33.10629 -32.68547 -30.11749 -29.10662 -27.04878 -26.60978 -25.53366 -24.18320 -23.64478 -22.23958 -21.87365 -21.00197 -20.78648 -19.15928 -18.80893 -18.11558 -17.81363 -17.72946 -17.63350 -17.38548 -16.90046 -16.70097 -16.37271 -16.04356 -15.86301 -15.68256 -15.22072 -14.95802 -14.73603 -14.46329 -14.29443 -14.20710 -14.15556 -13.93456 -13.83190 -13.77184 -13.51969 -13.27504 -12.99104 -12.88141 -12.78947 -12.75327 -12.57789 -12.29939 -12.25234 -11.77101 -11.58993 -11.49950 -11.18696 -10.95214 -10.92922 -10.59474 -10.28405 -9.59094 -4.99658 0.21382 0.83261 1.02750 1.18294 1.40487 1.59335 1.75423 1.91925 2.01216 2.20878 2.83009 3.09802 3.22309 3.34336 3.41708 3.45922 3.49632 3.71868 3.78084 3.88704 3.94700 4.02081 4.10859 4.18618 4.29631 4.30769 4.33010 4.46152 4.56430 4.58645 4.60425 4.65544 4.68323 4.77764 4.80626 4.85724 4.87249 4.89159 5.08542 5.10773 5.11833 5.21612 5.25269 5.40229 5.89081 6.34620 6.58840 6.62131 6.63727 7.07598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.470 3.530 5 O -0.538 6.538 6 C -0.101 4.101 7 H 0.144 0.856 8 C -0.136 4.136 9 C 0.114 3.886 10 O -0.539 6.539 11 C 0.109 3.891 12 N -0.710 5.710 13 C 0.591 3.409 14 O -0.572 6.572 15 C -0.269 4.269 16 C 0.086 3.914 17 C -0.087 4.087 18 O -0.172 6.172 19 C -0.061 4.061 20 C -0.020 4.020 21 O -0.539 6.539 22 Si 0.770 3.230 23 C -0.145 4.145 24 C -0.107 4.107 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.393 0.607 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.412 0.588 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.142 0.858 40 H 0.400 0.600 41 H -0.297 1.297 42 H -0.280 1.280 43 H 0.182 0.818 44 H 0.093 0.907 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.706 2.268 2.651 5.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.315 3.685 5 O -0.428 6.428 6 C -0.120 4.120 7 H 0.162 0.838 8 C -0.173 4.173 9 C 0.072 3.928 10 O -0.347 6.347 11 C -0.015 4.015 12 N -0.363 5.363 13 C 0.381 3.619 14 O -0.453 6.453 15 C -0.273 4.273 16 C 0.033 3.967 17 C -0.142 4.142 18 O -0.069 6.069 19 C -0.109 4.109 20 C -0.131 4.131 21 O -0.347 6.347 22 Si 0.676 3.324 23 C -0.164 4.164 24 C -0.145 4.145 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.243 0.757 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.250 0.750 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.159 0.841 40 H 0.250 0.750 41 H -0.224 1.224 42 H -0.207 1.207 43 H 0.200 0.800 44 H 0.111 0.889 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.593 2.315 2.320 4.863 hybrid contribution -0.198 0.060 -0.539 0.577 sum -3.791 2.375 1.781 4.815 Atomic orbital electron populations 1.21826 0.90640 1.04275 1.03771 1.23265 0.96981 0.79373 1.02469 1.86527 1.24258 1.33474 1.83378 1.24050 0.80551 0.92935 0.70992 1.90669 1.61159 1.44193 1.46794 1.22552 0.96952 0.89701 1.02796 0.83831 1.23675 0.98349 1.01093 0.94199 1.22094 0.93476 0.85336 0.91900 1.86574 1.96231 1.14724 1.37172 1.21867 0.99398 0.91068 0.89147 1.45480 1.33146 1.33237 1.24444 1.17339 0.81228 0.82785 0.80594 1.90781 1.32092 1.46630 1.75817 1.21145 1.03097 1.02676 1.00418 1.23215 0.95762 0.86166 0.91581 1.20712 0.90762 0.99287 1.03486 1.83681 1.37292 1.38312 1.47579 1.22919 0.91528 1.01719 0.94709 1.24403 0.84373 0.93878 1.10446 1.86536 1.23498 1.66834 1.57851 0.93297 0.75387 0.81296 0.82449 1.22823 0.99456 0.94339 0.99813 1.23063 0.93342 0.96925 1.01129 0.88565 0.91153 0.91268 0.91493 0.91362 0.88635 0.87095 0.75665 0.90366 0.91059 0.75027 0.88667 0.88000 0.88444 0.84109 0.74961 1.22410 1.20682 0.80040 0.88861 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.51 10.29 71.98 0.74 1.25 16 2 C 0.05 0.07 6.19 71.98 0.45 0.51 16 3 O -0.36 -1.36 10.22 -51.45 -0.53 -1.89 16 4 C 0.47 2.18 7.49 71.24 0.53 2.71 16 5 O -0.54 -5.84 15.65 21.98 0.34 -5.50 16 6 C -0.10 0.15 4.21 -10.95 -0.05 0.11 16 7 H 0.14 -0.54 8.14 -2.39 -0.02 -0.56 16 8 C -0.14 0.71 7.02 31.18 0.22 0.93 16 9 C 0.11 -0.48 1.42 -10.27 -0.01 -0.49 16 10 O -0.54 2.47 13.42 -148.98 -2.00 0.47 16 11 C 0.11 -0.17 5.26 86.38 0.45 0.28 16 12 N -0.71 2.08 5.32 -466.41 -2.48 -0.40 16 13 C 0.59 2.35 7.81 86.65 0.68 3.03 16 14 O -0.57 -6.35 14.84 -4.06 -0.06 -6.41 16 15 C -0.27 -0.48 6.31 -18.99 -0.12 -0.60 16 16 C 0.09 0.17 7.37 25.26 0.19 0.36 16 17 C -0.09 0.06 9.89 71.24 0.70 0.76 16 18 O -0.17 -0.09 8.90 4.38 0.04 -0.05 16 19 C -0.06 0.12 6.18 24.76 0.15 0.28 16 20 C -0.02 0.10 2.97 71.23 0.21 0.31 16 21 O -0.54 2.80 12.88 -148.98 -1.92 0.89 16 22 Si 0.77 -2.75 32.09 68.60 2.20 -0.55 16 23 C -0.15 0.40 10.48 23.65 0.25 0.65 16 24 C -0.11 0.10 6.79 31.12 0.21 0.31 16 25 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 26 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 27 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 28 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 29 H 0.07 0.11 8.13 -2.38 -0.02 0.09 16 30 H 0.10 -0.39 7.99 -2.39 -0.02 -0.41 16 31 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 32 H 0.39 -4.44 7.60 -74.05 -0.56 -5.00 16 33 H 0.08 0.03 8.05 -2.39 -0.02 0.01 16 34 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.41 -3.81 6.50 -92.71 -0.60 -4.41 16 36 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.10 0.25 6.48 -2.39 -0.02 0.24 16 39 H 0.14 -0.87 7.96 -2.39 -0.02 -0.89 16 40 H 0.40 -4.93 8.70 -74.06 -0.64 -5.57 16 41 H -0.30 -1.13 7.11 99.48 0.71 -0.42 16 42 H -0.28 -0.58 7.11 99.48 0.71 0.12 16 43 H 0.18 -1.57 7.74 -2.91 -0.02 -1.59 16 44 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.11 0.12 7.39 -2.39 -0.02 0.10 16 Total: 0.00 -23.56 385.17 -0.52 -24.08 By element: Atomic # 1 Polarization: -20.31 SS G_CDS: -0.72 Total: -21.03 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 4.60 Total: 10.39 kcal Atomic # 7 Polarization: 2.08 SS G_CDS: -2.48 Total: -0.40 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -4.12 Total: -12.49 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.20 Total: -0.55 kcal Total: -23.56 -0.52 -24.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_13308374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.220 kcal (2) G-P(sol) polarization free energy of solvation -23.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds