Wall clock time and date at job start Sun Mar 7 2021 07:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45195 * 109.47124 * 2 1 4 4 C 1.34232 * 116.99927 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99791 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99882 * 179.97438 * 4 3 2 7 7 H 1.09002 * 112.85178 * 309.66385 * 6 4 3 8 8 C 1.53785 * 113.69000 * 80.93543 * 6 4 3 9 9 C 1.53779 * 87.08093 * 139.98979 * 8 6 4 10 10 O 1.42902 * 113.61306 * 89.11547 * 9 8 6 11 11 C 1.52998 * 113.68908 * 220.00507 * 9 8 6 12 12 N 1.46501 * 109.47038 * 282.53587 * 11 9 8 13 13 C 1.34774 * 119.99454 * 180.02562 * 12 11 9 14 14 O 1.21589 * 120.00428 * 359.97438 * 13 12 11 15 15 C 1.47566 * 119.99735 * 180.02562 * 13 12 11 16 16 C 1.39827 * 119.99961 * 359.71367 * 15 13 12 17 17 C 1.36565 * 119.99744 * 179.78794 * 16 15 13 18 18 C 1.39821 * 120.00160 * 0.49813 * 17 16 15 19 19 C 1.47560 * 119.99921 * 179.76197 * 18 17 16 20 20 C 1.34979 * 125.27792 * 359.97158 * 19 18 17 21 21 C 1.37794 * 114.70443 * 180.02562 * 20 19 18 22 22 C 1.33741 * 115.07804 * 0.02562 * 21 20 19 23 23 C 1.50703 * 125.11742 * 179.97438 * 22 21 20 24 24 O 1.42889 * 109.47398 * 300.00339 * 23 22 21 25 25 Si 1.86308 * 109.46859 * 180.02562 * 23 22 21 26 26 S 1.75858 * 109.76313 * 359.73736 * 22 21 20 27 27 C 1.39822 * 120.00144 * 359.73431 * 18 17 16 28 28 C 1.36561 * 120.00133 * 0.02596 * 27 18 17 29 29 C 1.53781 * 113.61206 * 178.47078 * 6 4 3 30 30 H 1.08993 * 109.46867 * 59.99942 * 1 2 3 31 31 H 1.08998 * 109.47094 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46608 * 300.00047 * 1 2 3 33 33 H 1.09001 * 109.46715 * 239.99284 * 2 1 3 34 34 H 1.09003 * 109.46911 * 120.00138 * 2 1 3 35 35 H 1.09003 * 113.60734 * 254.54099 * 8 6 4 36 36 H 1.08996 * 113.61146 * 25.43597 * 8 6 4 37 37 H 0.96698 * 114.00167 * 82.50244 * 10 9 8 38 38 H 1.08996 * 109.47231 * 42.53978 * 11 9 8 39 39 H 1.08999 * 109.46974 * 162.53791 * 11 9 8 40 40 H 0.96992 * 119.99927 * 0.02562 * 12 11 9 41 41 H 1.08001 * 120.00366 * 0.02562 * 16 15 13 42 42 H 1.07997 * 119.99728 * 180.25491 * 17 16 15 43 43 H 1.08001 * 122.64730 * 359.97438 * 20 19 18 44 44 H 1.08002 * 122.46143 * 179.97438 * 21 20 19 45 45 H 1.08998 * 109.46758 * 60.00983 * 23 22 21 46 46 H 0.96703 * 114.00453 * 300.00001 * 24 23 22 47 47 H 1.48503 * 109.99583 * 179.97438 * 25 23 22 48 48 H 1.48493 * 110.00125 * 301.32229 * 25 23 22 49 49 H 1.07991 * 120.00121 * 180.02562 * 27 18 17 50 50 H 1.08003 * 120.00429 * 180.02562 * 28 27 18 51 51 H 1.09005 * 113.61302 * 334.48043 * 29 6 4 52 52 H 1.08993 * 113.62030 * 105.38889 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.4899 3.5733 -0.7744 8 6 3.9524 3.5935 1.3893 9 6 5.3323 4.1543 1.0067 10 8 5.2732 5.4243 0.3541 11 6 6.3482 4.1206 2.1502 12 7 6.0727 5.2183 3.0805 13 6 6.8460 5.3870 4.1714 14 8 7.7719 4.6280 4.3837 15 6 6.5683 6.4924 5.1088 16 6 5.5066 7.3682 4.8621 17 6 5.2470 8.3885 5.7319 18 6 6.0491 8.5636 6.8637 19 6 5.7718 9.6692 7.8007 20 6 4.7760 10.5710 7.6696 21 6 4.7166 11.5133 8.6731 22 6 5.6521 11.3917 9.6211 23 6 5.7966 12.2964 10.8177 24 8 6.0216 13.6368 10.3769 25 14 7.2403 11.7326 11.8516 26 16 6.6840 10.0129 9.2648 27 6 7.1138 7.6907 7.1078 28 6 7.3705 6.6675 6.2407 29 6 5.4579 2.9682 0.0359 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5140 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.1916 4.3619 1.5268 36 1 3.9846 2.8767 2.2097 37 1 5.1941 6.1742 0.9594 38 1 6.2707 3.1697 2.6771 39 1 7.3543 4.2310 1.7457 40 1 5.3340 5.8236 2.9113 41 1 4.8896 7.2356 3.9857 42 1 4.4244 9.0625 5.5435 43 1 4.0812 10.5556 6.8429 44 1 3.9699 12.2934 8.6923 45 1 4.8852 12.2581 11.4142 46 1 6.8179 13.7457 9.8391 47 1 7.3939 12.6172 13.0345 48 1 7.0338 10.3289 12.2897 49 1 7.7331 7.8257 7.9822 50 1 8.1926 5.9929 6.4295 51 1 5.9016 2.0804 0.4864 52 1 5.9125 3.2318 -0.9190 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_13308390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:24 Heat of formation + Delta-G solvation = -109.540956 kcal Electronic energy + Delta-G solvation = -35624.613643 eV Core-core repulsion = 30648.570890 eV Total energy + Delta-G solvation = -4976.042753 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.137 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.16710 -41.41885 -40.47176 -39.74667 -38.96906 -37.77290 -37.35727 -36.03921 -35.48040 -33.54814 -32.68468 -32.29612 -30.72101 -29.52452 -27.34580 -26.95629 -26.16948 -24.61168 -23.95930 -23.74268 -23.27670 -21.95391 -21.75450 -20.78122 -20.23731 -19.68010 -18.86525 -18.65510 -17.83567 -17.73273 -17.47062 -17.36948 -17.15577 -16.63920 -16.51153 -16.22432 -16.14657 -16.10235 -15.88536 -15.49387 -15.23385 -15.02247 -14.84705 -14.64702 -14.51494 -14.34867 -14.30455 -14.12353 -13.88587 -13.79415 -13.60111 -13.50811 -13.34914 -13.21202 -13.08828 -12.97896 -12.77772 -12.58671 -12.57245 -12.29199 -12.27405 -12.05872 -11.76589 -11.58507 -11.56162 -11.48853 -11.15937 -10.91488 -10.81262 -10.53761 -10.29707 -10.17189 -9.54435 -9.02180 -5.16075 -0.88205 0.25797 0.35647 0.39514 0.77395 1.04253 1.22414 1.52492 1.58846 1.59787 1.84936 1.92095 1.95741 2.82484 2.86656 3.10596 3.33872 3.40658 3.43119 3.45290 3.48299 3.68587 3.72595 3.76471 3.85844 3.90434 3.94979 4.02514 4.20172 4.21444 4.30047 4.31613 4.32916 4.37696 4.47845 4.56407 4.58395 4.61634 4.66032 4.69525 4.79857 4.86353 4.87773 4.90859 4.93726 5.02725 5.10069 5.11677 5.12955 5.17393 5.23649 5.30358 5.33583 5.41085 5.49843 5.74421 6.32521 6.62915 6.64078 6.66847 7.05183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.540 6.540 6 C -0.101 4.101 7 H 0.146 0.854 8 C -0.136 4.136 9 C 0.115 3.885 10 O -0.537 6.537 11 C 0.106 3.894 12 N -0.708 5.708 13 C 0.560 3.440 14 O -0.579 6.579 15 C -0.150 4.150 16 C -0.065 4.065 17 C -0.108 4.108 18 C 0.007 3.993 19 C -0.159 4.159 20 C -0.115 4.115 21 C -0.110 4.110 22 C -0.222 4.222 23 C -0.024 4.024 24 O -0.546 6.546 25 Si 0.715 3.285 26 S 0.119 5.881 27 C -0.129 4.129 28 C -0.064 4.064 29 C -0.109 4.109 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.394 0.606 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.415 0.585 41 H 0.168 0.832 42 H 0.163 0.837 43 H 0.169 0.831 44 H 0.154 0.846 45 H 0.123 0.877 46 H 0.397 0.603 47 H -0.269 1.269 48 H -0.268 1.268 49 H 0.132 0.868 50 H 0.127 0.873 51 H 0.103 0.897 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 5.056 -1.873 7.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.314 3.686 5 O -0.429 6.429 6 C -0.119 4.119 7 H 0.164 0.836 8 C -0.173 4.173 9 C 0.074 3.926 10 O -0.346 6.346 11 C -0.018 4.018 12 N -0.363 5.363 13 C 0.349 3.651 14 O -0.459 6.459 15 C -0.154 4.154 16 C -0.084 4.084 17 C -0.127 4.127 18 C 0.005 3.995 19 C -0.276 4.276 20 C -0.146 4.146 21 C -0.140 4.140 22 C -0.339 4.339 23 C -0.137 4.137 24 O -0.355 6.355 25 Si 0.619 3.381 26 S 0.386 5.614 27 C -0.148 4.148 28 C -0.083 4.083 29 C -0.147 4.147 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.245 0.755 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.254 0.746 41 H 0.185 0.815 42 H 0.180 0.820 43 H 0.186 0.814 44 H 0.171 0.829 45 H 0.140 0.860 46 H 0.247 0.753 47 H -0.195 1.195 48 H -0.194 1.194 49 H 0.150 0.850 50 H 0.145 0.855 51 H 0.121 0.879 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.532 2.998 -0.412 4.651 hybrid contribution -1.687 0.537 -0.172 1.779 sum -5.219 3.535 -0.584 6.330 Atomic orbital electron populations 1.21822 0.90617 1.04248 1.03800 1.23255 0.96989 0.79425 1.02409 1.86526 1.24257 1.33389 1.83387 1.24109 0.80545 0.93021 0.70970 1.90672 1.61189 1.44270 1.46811 1.22537 0.96839 0.89555 1.03008 0.83623 1.23657 0.98384 1.01088 0.94210 1.22069 0.93550 0.85576 0.91451 1.86588 1.96123 1.14720 1.37128 1.21883 0.99566 0.90852 0.89477 1.45576 1.34033 1.32741 1.23929 1.18469 0.81339 0.84098 0.81240 1.90809 1.32133 1.47422 1.75583 1.19968 1.00176 0.98058 0.97195 1.21281 0.94821 0.92484 0.99776 1.21218 0.99964 0.98843 0.92708 1.18477 0.95089 0.92242 0.93724 1.23171 1.02714 1.01783 0.99937 1.20642 0.98810 0.94025 1.01087 1.20193 0.99551 1.00470 0.93776 1.25154 1.02346 1.02577 1.03833 1.24381 1.09042 0.83757 0.96563 1.86489 1.50956 1.24204 1.73812 0.94194 0.83636 0.78176 0.82097 1.84228 1.32855 1.25489 1.18831 1.21019 0.98082 0.95345 1.00372 1.20940 0.98153 0.96619 0.92635 1.23073 0.93519 0.96821 1.01258 0.91207 0.88644 0.91132 0.91539 0.91461 0.86645 0.88744 0.75501 0.90592 0.91085 0.74605 0.81464 0.81988 0.81412 0.82862 0.86032 0.75318 1.19458 1.19444 0.85011 0.85493 0.87909 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.57 10.29 71.98 0.74 1.32 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.11 10.22 -51.44 -0.53 -1.64 16 4 C 0.47 1.88 7.49 71.24 0.53 2.42 16 5 O -0.54 -5.71 15.66 21.98 0.34 -5.36 16 6 C -0.10 0.26 4.19 -11.01 -0.05 0.21 16 7 H 0.15 -0.75 8.14 -2.39 -0.02 -0.77 16 8 C -0.14 0.92 7.02 31.12 0.22 1.14 16 9 C 0.12 -0.65 1.41 -10.27 -0.01 -0.67 16 10 O -0.54 3.63 13.41 -148.98 -2.00 1.63 16 11 C 0.11 -0.27 5.26 86.38 0.45 0.18 16 12 N -0.71 3.54 5.27 -466.25 -2.46 1.08 16 13 C 0.56 1.68 7.76 86.70 0.67 2.36 16 14 O -0.58 -7.42 16.33 -4.00 -0.07 -7.48 16 15 C -0.15 0.02 5.88 -20.05 -0.12 -0.09 16 16 C -0.07 0.47 9.48 22.26 0.21 0.68 16 17 C -0.11 0.68 9.48 22.26 0.21 0.89 16 18 C 0.01 -0.01 5.88 -20.05 -0.12 -0.13 16 19 C -0.16 0.22 6.37 23.98 0.15 0.37 16 20 C -0.12 0.42 9.64 21.41 0.21 0.63 16 21 C -0.11 0.26 10.00 21.14 0.21 0.47 16 22 C -0.22 0.33 5.73 24.66 0.14 0.47 16 23 C -0.02 0.05 2.96 71.24 0.21 0.26 16 24 O -0.55 0.93 12.86 -148.98 -1.92 -0.99 16 25 Si 0.72 -1.24 30.96 68.60 2.12 0.88 16 26 S 0.12 -0.12 19.46 -56.49 -1.10 -1.22 16 27 C -0.13 -0.07 9.54 22.26 0.21 0.14 16 28 C -0.06 -0.16 9.53 22.26 0.21 0.05 16 29 C -0.11 0.19 6.79 31.12 0.21 0.40 16 30 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 32 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 34 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 35 H 0.12 -1.29 8.14 -2.39 -0.02 -1.31 16 36 H 0.09 -0.50 7.99 -2.39 -0.02 -0.52 16 37 H 0.39 -5.69 7.60 -74.06 -0.56 -6.25 16 38 H 0.08 0.00 8.06 -2.39 -0.02 -0.02 16 39 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.41 -5.40 5.34 -92.71 -0.49 -5.90 16 41 H 0.17 -2.65 6.38 -2.91 -0.02 -2.67 16 42 H 0.16 -1.95 6.74 -2.91 -0.02 -1.97 16 43 H 0.17 -1.52 6.88 -2.91 -0.02 -1.54 16 44 H 0.15 -0.63 8.06 -2.91 -0.02 -0.66 16 45 H 0.12 -0.20 7.96 -2.39 -0.02 -0.22 16 46 H 0.40 -3.66 8.70 -74.06 -0.64 -4.30 16 47 H -0.27 -1.14 7.11 99.48 0.71 -0.44 16 48 H -0.27 -0.87 7.11 99.48 0.71 -0.16 16 49 H 0.13 -0.10 7.26 -2.92 -0.02 -0.13 16 50 H 0.13 0.58 7.64 -2.91 -0.02 0.56 16 51 H 0.10 0.08 7.42 -2.38 -0.02 0.06 16 52 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -27.42 448.55 -1.50 -28.92 By element: Atomic # 1 Polarization: -26.77 SS G_CDS: -0.66 Total: -27.43 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 4.75 Total: 11.60 kcal Atomic # 7 Polarization: 3.54 SS G_CDS: -2.46 Total: 1.08 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -4.16 Total: -13.84 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: 2.12 Total: 0.88 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -1.10 Total: -1.22 kcal Total: -27.42 -1.50 -28.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_13308390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.618 kcal (2) G-P(sol) polarization free energy of solvation -27.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds